Moc04g05940 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g05940
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr4: 4053772 .. 4054454 (+)
RNA-Seq Expression	Moc04g05940
Synteny	Moc04g05940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAAATTTAATGCCTTCATCGATGATGCAAATCTTGTTGATCCGTTTTTGACTAACGGTATTTTTACGTGGTCCAACCTCCGACACCAACCTGCTCTATCTCGCATCGACAGATTCCTCTATTCTCAGGAATGGCTTGAAAAAATTTCCCCCCACCAGGTACGCCGTCTCCCCCGAGTGTTGTTTGATCACTTTCCCATACTGACGGAATCCCCTAGTCTTAAATGGGGCCCTTGCCCTTTTCGGTTGGAGAGTTATACGATAAAAGCTTCAGGGCTCTCATAGAGAACAAATGATCCTCTCTCTCAATTCCTGGTTTTGCAGGTTTCTCATTCATTAAGCATCTGTCCTTGTTAGCACGAGAGATTCACTCCTGGAGACAGAATTCTCTCAACCAGCTAGCCACACGCAAAGCCACAATTATAGAAGAAATATCTGAGATAGACAGAAAAGAGGAAGCCAACTCCTTTGACTCTTCTGATCATCTTATCCGTCGGTCATTAAAAGGAGATCTTAGTGCTATTGTCCTAAAGGAAGCTAGACGTATGAGTCAGAGATGCAAGCGCATGTGGGTTATGGAAGGGGATGAGAACACTTCGTTCTTTCACAAGGTCTGTACAGCTCGCAAACGAAGAGGATTCATATCTGAAGTCGTATCCCTGGATGGGATTAGCCTGTAA

mRNA sequence

ATGCAAAAATTTAATGCCTTCATCGATGATGCAAATCTTGTTGATCCGTTTTTGACTAACGGTTTCTCATTCATTAAGCATCTGTCCTTGTTAGCACGAGAGATTCACTCCTGGAGACAGAATTCTCTCAACCAGCTAGCCACACGCAAAGCCACAATTATAGAAGAAATATCTGAGATAGACAGAAAAGAGGAAGCCAACTCCTTTGACTCTTCTGATCATCTTATCCGTCGGTCATTAAAAGGAGATCTTAGTGCTATTGTCCTAAAGGAAGCTAGACGTATGAGTCAGAGATGCAAGCGCATGTGGGTTATGGAAGGGGATGAGAACACTTCGTTCTTTCACAAGGTCTGTACAGCTCGCAAACGAAGAGGATTCATATCTGAAGTCGTATCCCTGGATGGGATTAGCCTGTAA

Coding sequence (CDS)

ATGCAAAAATTTAATGCCTTCATCGATGATGCAAATCTTGTTGATCCGTTTTTGACTAACGGTTTCTCATTCATTAAGCATCTGTCCTTGTTAGCACGAGAGATTCACTCCTGGAGACAGAATTCTCTCAACCAGCTAGCCACACGCAAAGCCACAATTATAGAAGAAATATCTGAGATAGACAGAAAAGAGGAAGCCAACTCCTTTGACTCTTCTGATCATCTTATCCGTCGGTCATTAAAAGGAGATCTTAGTGCTATTGTCCTAAAGGAAGCTAGACGTATGAGTCAGAGATGCAAGCGCATGTGGGTTATGGAAGGGGATGAGAACACTTCGTTCTTTCACAAGGTCTGTACAGCTCGCAAACGAAGAGGATTCATATCTGAAGTCGTATCCCTGGATGGGATTAGCCTGTAA

Protein sequence

MQKFNAFIDDANLVDPFLTNGFSFIKHLSLLAREIHSWRQNSLNQLATRKATIIEEISEIDRKEEANSFDSSDHLIRRSLKGDLSAIVLKEARRMSQRCKRMWVMEGDENTSFFHKVCTARKRRGFISEVVSLDGISL

Homology

[Close]

BLAST of Moc04g05940 vs. NCBI nr
Match: KAA0046762.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-19
Identity = 51/116 (43.97%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 21  GFSFIKHLSLLAREIHSWRQNSLNQLATRKATIIEEISEIDRKEEANSFDSSDHLIRRSL 80
           G+SFI+ L  LA  I  W++  LN  A+ K +II E+  ID+KE        +   R +L
Sbjct: 112 GYSFIQRLKSLANFIKPWQKEKLNSFASAKDSIIREVDSIDKKELDTPLSQEESDRRLAL 171

Query: 81  KGDLSAIVLKEARRMSQRCKRMWVMEGDENTSFFHKVCTARKRRGFISEVVSLDGI 137
           K DLS + LKE++   QR K++W+ EGDEN+SFFH++CTAR++R FI E+   +G+
Sbjct: 172 KADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICTARQKRNFIQEIQDEEGL 227

[Close]

BLAST of Moc04g05940 vs. NCBI nr
Match: KAA0037445.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK01919.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 4.0e-18
Identity = 49/116 (42.24%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 21  GFSFIKHLSLLAREIHSWRQNSLNQLATRKATIIEEISEIDRKEEANSFDSSDHLIRRSL 80
           GFSFI+ L  LA  I+ W++  L+ L   K  II E+  ID+KE        +   R +L
Sbjct: 112 GFSFIQRLKSLANFINPWQKEKLHSLTYAKDNIIREVDSIDKKELDTPLTQEESNRRLAL 171

Query: 81  KGDLSAIVLKEARRMSQRCKRMWVMEGDENTSFFHKVCTARKRRGFISEVVSLDGI 137
           K DLS + LKE++   QR K++W+ EGDEN+SFFH++C++R++R FI E+   +G+
Sbjct: 172 KADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFIHEIQDEEGL 227

[Close]

BLAST of Moc04g05940 vs. NCBI nr
Match: TYJ99315.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 9.0e-18
Identity = 49/115 (42.61%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 21   GFSFIKHLSLLAREIHSWRQNSLNQLATRKATIIEEISEIDRKEEANSFDSSDHLIRRSL 80
            GFSFI+ L  LA  I  W++  L+ L   K  II E+  ID+KE        +   R +L
Sbjct: 1000 GFSFIQRLKSLANFIKPWQKEKLHSLTYAKEAIIREVDSIDKKELDTPLTQEESNRRLAL 1059

Query: 81   KGDLSAIVLKEARRMSQRCKRMWVMEGDENTSFFHKVCTARKRRGFISEVVSLDG 136
            K DLS + LKE++   QR K++W+ EGDEN+SFFH++C++R++R FI E+   +G
Sbjct: 1060 KADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFIHEIQDEEG 1114

[Close]

BLAST of Moc04g05940 vs. NCBI nr
Match: KAA0045138.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK23599.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 2.6e-17
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 21  GFSFIKHLSLLAREIHSWRQNSLNQLATRKATIIEEISEIDRKEEANSFDSSDHLIRRSL 80
           GFSFI+ L  LA  I  W++  L+ L   K  II E+  ID+KE        +   R +L
Sbjct: 112 GFSFIQRLKSLANFIKPWQKEKLHSLTYAKDNIIREVESIDKKEVDTPLTQEESNRRLAL 171

Query: 81  KGDLSAIVLKEARRMSQRCKRMWVMEGDENTSFFHKVCTARKRRGFISEV 131
           K DLS + LKE++   QR K++W+ EGDEN+SFFH++C++R++R FI E+
Sbjct: 172 KADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFIHEI 221

[Close]

BLAST of Moc04g05940 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-16
Identity = 49/115 (42.61%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 21  GFSFIKHLSLLAREIHSWRQNSLNQLATRKATIIEEISEIDRKEEANSFDSSDHLIRRSL 80
           G+SF++ L  LA  I +W ++   +    K   I+EI +ID+ E   S        R +L
Sbjct: 199 GYSFMRRLKQLALIIKTWGRDKKGKNEASKKACIKEIDQIDKLEAEGSATEIHREKRTAL 258

Query: 81  KGDLSAIVLKEARRMSQRCKRMWVMEGDENTSFFHKVCTARKRRGFISEVVSLDG 136
           K DLS I L EA+  +Q+CKR+WV EGDEN+SFFHK+CTAR+++  IS++++  G
Sbjct: 259 KADLSQINLTEAQIWAQKCKRIWVHEGDENSSFFHKICTARQKKCLISKIINNSG 313

[Close]

BLAST of Moc04g05940 vs. ExPASy TrEMBL
Match: A0A5A7TTK1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00450 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 8.0e-20
Identity = 51/116 (43.97%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 21  GFSFIKHLSLLAREIHSWRQNSLNQLATRKATIIEEISEIDRKEEANSFDSSDHLIRRSL 80
           G+SFI+ L  LA  I  W++  LN  A+ K +II E+  ID+KE        +   R +L
Sbjct: 112 GYSFIQRLKSLANFIKPWQKEKLNSFASAKDSIIREVDSIDKKELDTPLSQEESDRRLAL 171

Query: 81  KGDLSAIVLKEARRMSQRCKRMWVMEGDENTSFFHKVCTARKRRGFISEVVSLDGI 137
           K DLS + LKE++   QR K++W+ EGDEN+SFFH++CTAR++R FI E+   +G+
Sbjct: 172 KADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICTARQKRNFIQEIQDEEGL 227

[Close]

BLAST of Moc04g05940 vs. ExPASy TrEMBL
Match: A0A5D3BUZ3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00050 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.0e-18
Identity = 49/116 (42.24%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 21  GFSFIKHLSLLAREIHSWRQNSLNQLATRKATIIEEISEIDRKEEANSFDSSDHLIRRSL 80
           GFSFI+ L  LA  I+ W++  L+ L   K  II E+  ID+KE        +   R +L
Sbjct: 112 GFSFIQRLKSLANFINPWQKEKLHSLTYAKDNIIREVDSIDKKELDTPLTQEESNRRLAL 171

Query: 81  KGDLSAIVLKEARRMSQRCKRMWVMEGDENTSFFHKVCTARKRRGFISEVVSLDGI 137
           K DLS + LKE++   QR K++W+ EGDEN+SFFH++C++R++R FI E+   +G+
Sbjct: 172 KADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFIHEIQDEEGL 227

[Close]

BLAST of Moc04g05940 vs. ExPASy TrEMBL
Match: A0A5D3BLV7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005290 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.4e-18
Identity = 49/115 (42.61%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 21   GFSFIKHLSLLAREIHSWRQNSLNQLATRKATIIEEISEIDRKEEANSFDSSDHLIRRSL 80
            GFSFI+ L  LA  I  W++  L+ L   K  II E+  ID+KE        +   R +L
Sbjct: 1000 GFSFIQRLKSLANFIKPWQKEKLHSLTYAKEAIIREVDSIDKKELDTPLTQEESNRRLAL 1059

Query: 81   KGDLSAIVLKEARRMSQRCKRMWVMEGDENTSFFHKVCTARKRRGFISEVVSLDG 136
            K DLS + LKE++   QR K++W+ EGDEN+SFFH++C++R++R FI E+   +G
Sbjct: 1060 KADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFIHEIQDEEG 1114

[Close]

BLAST of Moc04g05940 vs. ExPASy TrEMBL
Match: A0A5A7TQI1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001110 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-17
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 21  GFSFIKHLSLLAREIHSWRQNSLNQLATRKATIIEEISEIDRKEEANSFDSSDHLIRRSL 80
           GFSFI+ L  LA  I  W++  L+ L   K  II E+  ID+KE        +   R +L
Sbjct: 112 GFSFIQRLKSLANFIKPWQKEKLHSLTYAKDNIIREVESIDKKEVDTPLTQEESNRRLAL 171

Query: 81  KGDLSAIVLKEARRMSQRCKRMWVMEGDENTSFFHKVCTARKRRGFISEV 131
           K DLS + LKE++   QR K++W+ EGDEN+SFFH++C++R++R FI E+
Sbjct: 172 KADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFIHEI 221

[Close]

BLAST of Moc04g05940 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.3e-17
Identity = 49/115 (42.61%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 21  GFSFIKHLSLLAREIHSWRQNSLNQLATRKATIIEEISEIDRKEEANSFDSSDHLIRRSL 80
           G+SF++ L  LA  I +W ++   +    K   I+EI +ID+ E   S        R +L
Sbjct: 199 GYSFMRRLKQLALIIKTWGRDKKGKNEASKKACIKEIDQIDKLEAEGSATEIHREKRTAL 258

Query: 81  KGDLSAIVLKEARRMSQRCKRMWVMEGDENTSFFHKVCTARKRRGFISEVVSLDG 136
           K DLS I L EA+  +Q+CKR+WV EGDEN+SFFHK+CTAR+++  IS++++  G
Sbjct: 259 KADLSQINLTEAQIWAQKCKRIWVHEGDENSSFFHKICTARQKKCLISKIINNSG 313

The following BLAST results are available for this feature:

BLAST of Moc04g05940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046762.1	1.6e-19	43.97	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0037445.1	4.0e-18	42.24	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK019...	[more]
TYJ99315.1	9.0e-18	42.61	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0045138.1	2.6e-17	43.64	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK235...	[more]
KAA0039950.1	1.3e-16	42.61	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]

BLAST of Moc04g05940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g05940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTK1	8.0e-20	43.97	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BUZ3	2.0e-18	42.24	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BLV7	4.4e-18	42.61	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TQI1	1.3e-17	43.64	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	6.3e-17	42.61	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Moc04g05940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g05940.1	Moc04g05940.1	mRNA