Moc04g05590 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g05590
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	protein RADIALIS-like 3
Location	chr4: 3775990 .. 3777704 (+)
RNA-Seq Expression	Moc04g05590
Synteny	Moc04g05590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGAGCTCTCTGAAGCAGCAGCGGCCGGAGGCAACTTGGACGGCGAAGCAAAACAAGCTGTTCGAGAAGGCATTGGCTTTGTACGACAAAGAAACGCCGGAGAGATGGCAGAATATTGCCAACGCCGTCGGCGGCAAGTCCGCCGACGAAGTCAAACGTCACTACCAGATTCTCTTGGAAGATCTCCGGCGGATCGAGTCCGGCCGCGTTCCCATCCCCAATTACAGAGCCTCCGCCGTCGCCGCCGGCAATGCCGATGAGGAGTTGAGGTTAGTGAAGAATATGATGGAAGATTCAAAGATATTTAGCTCCACGATATTTTTATAAGTTCTTTTTTCTTGAAGATATTTTTATGCATGTTTTTTAGTTTTTCCCCCAAATTATAGATATGGTAGAAGGAATTTTTAGCAACTTATTATTTTATTTTTTTCAAGTTTAAGTAGGTGGGACTTGGGAGGAGATATAAACTTTTGACTTATTCAATGCAAATTATCTTTAAAAAATAATTAGAATCTTGTCTTCCTCACCATTAAATATTTGATAATTAAGTGAGATAAATGTAGAAATCGAGAATTTTTTTTAAAATAATTTGTTCTCGATTTTTCAACACAGTGAAGATAAGATTTGGGTTCTCAAAGAATCTAAAGTATTTTCTTTTTATCTTAACTATATTGTTTATTTAGAAATAGTTTTGGAAGTATTTCTAATCATTGTAGTTTGATGATATTTTTTCCATTTTTTTTTGGTACTAGTTGTTTTTTGATATGTTAAATATTCTTGGTTGGATTTTTACATTTTATTACTTAGTTTCGGTAATTTTGTATGTGAATAAATTTTATGACTAGACTTGAGTATTTTATGGTTGAGTTTGGATATACTAGTGTGACCTGATTTTGAGTCTTTTTTTTTTTTTTTAGTTACCTTGGGAACTATTTTATTATTATTTTTGAGGAGGTATGAAATTATTTACCATTTGTTCAAGTTTAAGATTTAATTAGATGAAGTTAGGTTGAAGGTAAAATTGATCGTTGGGTTATGTATTATAAGATAAAATGATGAATCTTTCTTAAAGATTTTAATCCTATCAAATTGAACATCAGAACTGAAATGAGCCTTAATTATTGTTCTCAAATTTGAGTAACAAAAAAAAACTCCCAAAATAAAACCACAAAATACATAAACCTATAACTCAAATGTCACAAAAAAAAAAAAACACCTACACAAAAATGTAAGATTCATCCAAACAAAACAAATACACAACATTTTAAAAGAGTGCCAACTTTTTGCCACTAGTTTAAGTTTAAGAATTCATTTTAATAAAATTAAATTCGACTCTCTCCCTCTTCTTCTCGAGCAATGCTGTGAATGCTGTGGGATTGTTATTCTCGTTCATTTGGATGAAAAAGAAACAACAGACTTTTTTCGGACTCTCCAAAATCATGCGTTCATCTTTGTGAAGATATTGAGATTTTAGGTTTGACTACGATATCTCTATAATTTTCCTTAACTTGAGTGCTTTCTTCCGACTTTTTTTTTCTGTACTCTGTATATTTCTCACGTACCTTTTTGAAGGAAAGGGTTTCAAATATTTTTTTTTTCTTTAAAAAAGAATAAGCTAAATGGGGTAGTTGAATGCTTTTTATTTTTTTTCCCCTTAATGTTCATTTGCTAATTTTCGTAGGCTGCTGAAGTATCTTAAGCTGCGATAA

mRNA sequence

ATGGCTTCGAGCTCTCTGAAGCAGCAGCGGCCGGAGGCAACTTGGACGGCGAAGCAAAACAAGCTGTTCGAGAAGGCATTGGCTTTGTACGACAAAGAAACGCCGGAGAGATGGCAGAATATTGCCAACGCCGTCGGCGGCAAGTCCGCCGACGAAGTCAAACGTCACTACCAGATTCTCTTGGAAGATCTCCGGCGGATCGAGTCCGGCCGCGTTCCCATCCCCAATTACAGAGCCTCCGCCGTCGCCGCCGGCAATGCCGATGAGGAGTTGAGGCTGCTGAAGTATCTTAAGCTGCGATAA

Coding sequence (CDS)

ATGGCTTCGAGCTCTCTGAAGCAGCAGCGGCCGGAGGCAACTTGGACGGCGAAGCAAAACAAGCTGTTCGAGAAGGCATTGGCTTTGTACGACAAAGAAACGCCGGAGAGATGGCAGAATATTGCCAACGCCGTCGGCGGCAAGTCCGCCGACGAAGTCAAACGTCACTACCAGATTCTCTTGGAAGATCTCCGGCGGATCGAGTCCGGCCGCGTTCCCATCCCCAATTACAGAGCCTCCGCCGTCGCCGCCGGCAATGCCGATGAGGAGTTGAGGCTGCTGAAGTATCTTAAGCTGCGATAA

Protein sequence

MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR

Homology

[Close]

BLAST of Moc04g05590 vs. NCBI nr
Match: XP_022136071.1 (protein RADIALIS-like 3 [Momordica charantia])

HSP 1 Score: 196.8 bits (499), Expect = 8.8e-47
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
           MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL
Sbjct: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60

Query: 61  LEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR 101
           LEDLRRIESGRVPIPNYRASA AAGNADEELRLLKYLKLR
Sbjct: 61  LEDLRRIESGRVPIPNYRASAXAAGNADEELRLLKYLKLR 100

[Close]

BLAST of Moc04g05590 vs. NCBI nr
Match: XP_023554816.1 (protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.6 bits (436), Expect = 1.8e-39
Identity = 89/100 (89.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
           MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHY+IL
Sbjct: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61  LEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR 101
           LEDLRRIESGRVPIPNYR     A N DEELRLLKYLKL+
Sbjct: 61  LEDLRRIESGRVPIPNYR----GAHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Moc04g05590 vs. NCBI nr
Match: XP_038888995.1 (protein RADIALIS-like 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 170.2 bits (430), Expect = 8.8e-39
Identity = 86/100 (86.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
           MASSSLKQQRPE TWTAKQNKLFEKALALYDKETPERW NIA AVGGKS DEVKRHY++L
Sbjct: 1   MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSTDEVKRHYEVL 60

Query: 61  LEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR 101
           LEDLRRIESGRVPIPNYR      GN DEELRLLKYLKL+
Sbjct: 61  LEDLRRIESGRVPIPNYR----GGGNRDEELRLLKYLKLQ 96

[Close]

BLAST of Moc04g05590 vs. NCBI nr
Match: XP_022975322.1 (protein RADIALIS-like 3 [Cucurbita maxima])

HSP 1 Score: 168.7 bits (426), Expect = 2.6e-38
Identity = 87/100 (87.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
           MASSSLKQQRPEATWTAKQNKLFEKALALYDKE PERW NIA AVGGKSADEVKRHY+IL
Sbjct: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61  LEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR 101
           LEDL+RIESGRVPIPNYR     A N DEELRLLKYLKL+
Sbjct: 61  LEDLQRIESGRVPIPNYR----GAHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Moc04g05590 vs. NCBI nr
Match: XP_022952671.1 (protein RADIALIS-like 3 [Cucurbita moschata])

HSP 1 Score: 168.3 bits (425), Expect = 3.3e-38
Identity = 87/100 (87.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
           MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHY+IL
Sbjct: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61  LEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR 101
           LEDL RIESGRVPIPNYR       N DEELRLLKYLKL+
Sbjct: 61  LEDLLRIESGRVPIPNYR----GVHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Moc04g05590 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-24
Identity = 56/103 (54.37%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
           MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+A AVG KSA+EVKRHY IL
Sbjct: 1   MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRRIESGRVPIPNYRASAVAA---GNADEELRLLKYLKLR 101
           +EDL  IE   VP+P Y+   V +   G  D +LRL+K ++++
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of Moc04g05590 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.3e-24
Identity = 52/101 (51.49%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
           MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+A  VGGK+ +EVKRHY++L
Sbjct: 1   MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRRIESGRVPIPNYRAS-AVAAGNADEELRLLKYLKLR 101
           ++D+  IE+G VP PNYR S     G   +E + ++ ++L+
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of Moc04g05590 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.0e-23
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
           MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVGGK+ +EVKRHY IL
Sbjct: 1   MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61  LEDLRRIESGRVPIPNYRA-SAVAAGNADEELRLLKYLKL 100
           +EDL  IE+GRVP+PNY+   + +    D + R +K LK+
Sbjct: 61  VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Moc04g05590 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-22
Identity = 48/80 (60.00%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
          MAS+S+      A+WT K+NKLFE+ALA YD++TP+RW N+A AVGGKSA+EV+RHY++L
Sbjct: 1  MASNSMSS---SASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELL 60

Query: 61 LEDLRRIESGRVPIPNYRAS 81
          + D+  IESGR P PNYR++
Sbjct: 61 IRDVNDIESGRYPHPNYRSN 77

[Close]

BLAST of Moc04g05590 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.9e-22
Identity = 46/86 (53.49%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 15  WTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQILLEDLRRIESGRVPI 74
           W+AK+NK FE+ALA+YDK+TP+RW N+A AV G++ +EVK+HY+IL+ED++ IESG+VP 
Sbjct: 11  WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 75  PNYRASAVAAGNADEELRLLKYLKLR 101
           PNYR +    GN   + +  + LK+R
Sbjct: 71  PNYRTT---GGNMKTDEKRFRNLKIR 93

[Close]

BLAST of Moc04g05590 vs. ExPASy TrEMBL
Match: A0A6J1C2H2 (protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111007854 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.2e-47
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
           MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL
Sbjct: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60

Query: 61  LEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR 101
           LEDLRRIESGRVPIPNYRASA AAGNADEELRLLKYLKLR
Sbjct: 61  LEDLRRIESGRVPIPNYRASAXAAGNADEELRLLKYLKLR 100

[Close]

BLAST of Moc04g05590 vs. ExPASy TrEMBL
Match: A0A6J1ICR6 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-38
Identity = 87/100 (87.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
           MASSSLKQQRPEATWTAKQNKLFEKALALYDKE PERW NIA AVGGKSADEVKRHY+IL
Sbjct: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61  LEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR 101
           LEDL+RIESGRVPIPNYR     A N DEELRLLKYLKL+
Sbjct: 61  LEDLQRIESGRVPIPNYR----GAHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Moc04g05590 vs. ExPASy TrEMBL
Match: A0A0A0K2A2 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.6e-38
Identity = 85/100 (85.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
           MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERWQNIA AVGGKSADEV+RHY+IL
Sbjct: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61  LEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR 101
           LEDLRRIESGRVPIPNYR ++    N DEELRLLKYLKL+
Sbjct: 61  LEDLRRIESGRVPIPNYRRTS----NRDEELRLLKYLKLQ 96

[Close]

BLAST of Moc04g05590 vs. ExPASy TrEMBL
Match: A0A6J1GKW1 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.6e-38
Identity = 87/100 (87.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
           MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHY+IL
Sbjct: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61  LEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR 101
           LEDL RIESGRVPIPNYR       N DEELRLLKYLKL+
Sbjct: 61  LEDLLRIESGRVPIPNYR----GVHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Moc04g05590 vs. ExPASy TrEMBL
Match: A0A1S3BHB0 (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.6e-38
Identity = 84/100 (84.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
           MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERWQNIA AVGGKSADEV+RHY+IL
Sbjct: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61  LEDLRRIESGRVPIPNYRASAVAAGNADEELRLLKYLKLR 101
           LEDLR+IESGRVPIPNYR ++    N DEELRLLKYLKL+
Sbjct: 61  LEDLRQIESGRVPIPNYRGTS----NRDEELRLLKYLKLQ 96

[Close]

BLAST of Moc04g05590 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-25
Identity = 56/103 (54.37%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
           MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+A AVG KSA+EVKRHY IL
Sbjct: 1   MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRRIESGRVPIPNYRASAVAA---GNADEELRLLKYLKLR 101
           +EDL  IE   VP+P Y+   V +   G  D +LRL+K ++++
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of Moc04g05590 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 110.9 bits (276), Expect = 5.9e-25
Identity = 52/101 (51.49%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
           MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+A  VGGK+ +EVKRHY++L
Sbjct: 1   MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRRIESGRVPIPNYRAS-AVAAGNADEELRLLKYLKLR 101
           ++D+  IE+G VP PNYR S     G   +E + ++ ++L+
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of Moc04g05590 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 107.8 bits (268), Expect = 5.0e-24
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
           MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVGGK+ +EVKRHY IL
Sbjct: 1   MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61  LEDLRRIESGRVPIPNYRA-SAVAAGNADEELRLLKYLKL 100
           +EDL  IE+GRVP+PNY+   + +    D + R +K LK+
Sbjct: 61  VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Moc04g05590 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-23
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVGGK+ +EVKRHY IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRRIESGRVPIPNYR 79
          +EDL  IE+GRVP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of Moc04g05590 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 98.2 bits (243), Expect = 3.9e-21
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60
          MASSS+      ++WTA+++K FE ALA +DK+TP+RWQ IA AVGGKS +EVKRHY++L
Sbjct: 1  MASSSMS----TSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELL 60

Query: 61 LEDLRRIESGRVPIPNYR 79
          L D+  IESGR P P YR
Sbjct: 61 LRDVNDIESGRYPQPRYR 74

The following BLAST results are available for this feature:

BLAST of Moc04g05590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136071.1	8.8e-47	99.00	protein RADIALIS-like 3 [Momordica charantia]	[more]
XP_023554816.1	1.8e-39	89.00	protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]	[more]
XP_038888995.1	8.8e-39	86.00	protein RADIALIS-like 3 isoform X1 [Benincasa hispida]	[more]
XP_022975322.1	2.6e-38	87.00	protein RADIALIS-like 3 [Cucurbita maxima]	[more]
XP_022952671.1	3.3e-38	87.00	protein RADIALIS-like 3 [Cucurbita moschata]	[more]

BLAST of Moc04g05590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW75	1.7e-24	54.37	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	8.3e-24	51.49	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q1A173	7.0e-23	54.00	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q6NNN0	1.6e-22	60.00	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q58FS3	5.9e-22	53.49	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of Moc04g05590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2H2	4.2e-47	99.00	protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111007854 PE=4 SV=1	[more]
A0A6J1ICR6	1.2e-38	87.00	protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1	[more]
A0A0A0K2A2	1.6e-38	85.00	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 S...	[more]
A0A6J1GKW1	1.6e-38	87.00	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1	[more]
A0A1S3BHB0	3.6e-38	84.00	protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1	[more]

BLAST of Moc04g05590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19510.1	1.2e-25	54.37	RAD-like 5	[more]
AT4G39250.1	5.9e-25	51.49	RAD-like 1	[more]
AT1G75250.2	5.0e-24	54.00	RAD-like 6	[more]
AT1G75250.1	1.9e-23	62.82	RAD-like 6	[more]
AT2G18328.1	3.9e-21	60.26	RAD-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 11..63 e-value: 2.0E-7 score: 40.7
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 7..61 score: 6.620475
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 14..61 e-value: 1.23802E-6 score: 39.8662
None	No IPR available	GENE3D	1.10.10.60		coord: 7..74 e-value: 8.9E-24 score: 85.1
None	No IPR available	PANTHER	PTHR43952:SF29	PROTEIN RADIALIS-LIKE 3	coord: 1..80
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..58 e-value: 2.2E-6 score: 27.8
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..80
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g05590.1	Moc04g05590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003723	RNA binding