Moc04g03810 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g03810
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Pentatricopeptide repeat-containing protein
Location	chr4: 2416500 .. 2418762 (+)
RNA-Seq Expression	Moc04g03810
Synteny	Moc04g03810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTCTTAGCAATTCCTCCGTCGCCGACGACGATTTTCAGTTCGCCGCACAAGTTACTGAGCTCCGGCGAGAAATCATCTTGCCTCCGACTAGGTAGGGCGGAGGAATATCGGAGAGTGACAATGAGAGGCGGAAGCGAGAACCGGAAGCCGTTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTACAGTCGTTGAAACGAGTCAAGAACGATCTACAACAATTGGACCGAGTGTATGATTCCAAAATTAGCCGCTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTGCTGCGCCAGAACGAGTGTCTTTTGGCTCTCAAGGTGATGCCTCTAAAACTCGATTTTTACGTTTATCTGTATATACGATTGATTTGATATCGAAATCACTCCGATATTGCCCTATCGCGATAGCCAGAGTACAGATTTTTCGCTTGTTGTAACTTCCCTCAATATTCCTTGCTGATATTCTATATTGTTTTCGATTTCTGAGACTTAGGTTTTTGAAGATGTTAGAAATGAACACTGGTACAAACCTCAGGTCTCGCTGTATGCTGATATTATCACAGTATTGGCTAGCAATGGATTATTCGAACAAGTACAAATTATTCATTCCTACTTGAAAGTAGAAACTGACTTAGCGCCTGAAATTGACGGTTTTAACGCTCTTTTGAGGGCTTTGGTTAGTTATAATTTAGGTGAGCTTGCGATGGAGTCCTATTACTTGATGAAAAAAGTGGGTTGCGAGCCAGATAAGACTTCTTTCAGGATAGTCATAAAAGGATTGGAATCAACGGTAGAGGCAGTTGATTTAAGAATTGTGAAGCAGGATGCACAAAAGATTTATGGTGATTTACTTGAGTTTCTAGAGGAAGAGGATGAGGCAGCTATAGCCACTTCTATGCGCTGAGCTGCAGAATCTAGATCCCAATCATGGAAGCCAATATATGCACAGATTGAACTTGTGGCTAGATGTAGTTCGTCTGGGTTTCCTTTGAAGAAACCTGAAGAGACCAAGAAAGTTGCCTTGAACATGAATTTATGCACACATGGCAGTGAAATATTTGTGGTAACTTTTGAGATTATGTTCAACTGGATAATTGACAATAGTTGGATCTTGTGAATGTTGGATGAATTGAATTGGTGTACTCATTATTCTCCTTGTTCTTTTGCTTCAGCTTCCCATGCTGCTGGGATCCAAATATTTCACGCAATTGGTACTGTCGTTAGTCTATGCAGAGAGAGCTGTACATCTTGCAATGCAACATACTTTAGCCTTCTGTTGTGAGTATGAGAATTTCATTAAGTCCACCGAAGATGGAAATATAAGGAAAATAACTGCATTATAATGCTAGGTGCATGATACTGGGTTTCTTTTTCCTTCCACAGTGGGCATAATTATATGTAGAATACAAGGACAAAACCGGGTTCTGTAGAGCTACATTGCTTTTGTAAAACTATACATAGTTCAGATGAAAAATGCAGGCTCTATGCGACTGCTAATTTTGTGCAGTCTAATTCTGATGCGCGTTTACACATCAAGAGATTTAACATGCCACTGCCAGTGTAATACTAATGCTTGAGTTTCTAGTTATATTTCCTTGAAGAAGGCCTAAAATTTTGATTTAGATTCCTCAATTGCATGACAATGTCAAAACTGTTTCCCTTCAAATGTCTGCCCGAACTGCCAGTTTCCAGGTGCAACACCATAGGAAGTAAGTGCTCTTCCACTGCTAGAGGTAACTTCAAAAGAGAGAGGTTGCCCATGAAGATTGACATTGCTTTGCCAGTTTTGTCCCCAGTTCCTTGCCAGTGGTATCCATCCTGTTCTTGATCCCTTCACTTTCACTGCCACCAATTCACCGTCCATTCCGACATTGGTAATCAGAACTTGAAAGAAGCGAGAATTGCCACGGACTGTGAATCTCAATCCACCACTCCTGTCACACCTCACCCTACACACATTTTAGACACGGTTTTTCCCTTAGCCGAAGATGACAAAACGTTCGAATCTATATGCATTTAGATTGATATTACCTCCTGTATTGAACTGGCACAATATCTGCTTTTCTCTCTGCTATTTCAGCAAACGCTGCCTCTGACATCTCAAAGTGTTCTTGGGGAAAATTGCACCACCCACCATAATCAGAGGATAAGCCATAATTGGGAGGACAGAAGTCCGTCGCTGTTAGAATCACGGTCGGGCTTCCTTGCAAGCACCATAAGATGTGGTCAACACATCTAA

mRNA sequence

ATGAATTTCTTAGCAATTCCTCCGTCGCCGACGACGATTTTCAGTTCGCCGCACAAGTTACTGAGCTCCGGCGAGAAATCATCTTGCCTCCGACTAGGTAGGGCGGAGGAATATCGGAGAGTGACAATGAGAGGCGGAAGCGAGAACCGGAAGCCGTTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTACAGTCGTTGAAACGAGTCAAGAACGATCTACAACAATTGGACCGAGTGTATGATTCCAAAATTAGCCGCTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTGCTGCGCCAGAACGAGTGTCTTTTGGCTCTCAAGCAAACGCTGCCTCTGACATCTCAAAGTGTTCTTGGGGAAAATTGCACCACCCACCATAATCAGAGGATAAGCCATAATTGGGAGGACAGAAGTCCGTCGCTGTTAGAATCACGGTCGGGCTTCCTTGCAAGCACCATAAGATGTGGTCAACACATCTAA

Coding sequence (CDS)

ATGAATTTCTTAGCAATTCCTCCGTCGCCGACGACGATTTTCAGTTCGCCGCACAAGTTACTGAGCTCCGGCGAGAAATCATCTTGCCTCCGACTAGGTAGGGCGGAGGAATATCGGAGAGTGACAATGAGAGGCGGAAGCGAGAACCGGAAGCCGTTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTACAGTCGTTGAAACGAGTCAAGAACGATCTACAACAATTGGACCGAGTGTATGATTCCAAAATTAGCCGCTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTGCTGCGCCAGAACGAGTGTCTTTTGGCTCTCAAGCAAACGCTGCCTCTGACATCTCAAAGTGTTCTTGGGGAAAATTGCACCACCCACCATAATCAGAGGATAAGCCATAATTGGGAGGACAGAAGTCCGTCGCTGTTAGAATCACGGTCGGGCTTCCTTGCAAGCACCATAAGATGTGGTCAACACATCTAA

Protein sequence

MNFLAIPPSPTTIFSSPHKLLSSGEKSSCLRLGRAEEYRRVTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALKQTLPLTSQSVLGENCTTHHNQRISHNWEDRSPSLLESRSGFLASTIRCGQHI

Homology

[Close]

BLAST of Moc04g03810 vs. NCBI nr
Match: XP_022135810.1 (pentatricopeptide repeat-containing protein At1g62350-like [Momordica charantia] >XP_022135811.1 pentatricopeptide repeat-containing protein At1g62350-like [Momordica charantia] >XP_022135812.1 pentatricopeptide repeat-containing protein At1g62350-like [Momordica charantia])

HSP 1 Score: 216.5 bits (550), Expect = 1.8e-52
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MNFLAIPPSPTTIFSSPHKLLSSGEKSSCLRLGRAEEYRRVTMRGGSENRKPLQKGRNLS 60
           MNFLAIPPSPTTIFSSPHKLLSSGEKSSCLRLGRAEEYRRVTMRGGSENRKPLQKGRNLS
Sbjct: 1   MNFLAIPPSPTTIFSSPHKLLSSGEKSSCLRLGRAEEYRRVTMRGGSENRKPLQKGRNLS 60

Query: 61  IEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALK 115
           IEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALK
Sbjct: 61  IEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALK 114

[Close]

BLAST of Moc04g03810 vs. NCBI nr
Match: XP_038888189.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 173.7 bits (439), Expect = 1.3e-39
Identity = 96/114 (84.21%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 1   MNFLAIPPSPTTIFSSPHKLLSSGEKSSCLRLGRAEEYRRVTMRGGSENRKPLQKGRNLS 60
           M+FL  PPSP TI S  +KLLSSG ++SCL LGRAE YR+VTMRGGSENRKPLQKGRNLS
Sbjct: 1   MSFLIRPPSP-TILSPSYKLLSSGGEASCLLLGRAEGYRKVTMRGGSENRKPLQKGRNLS 60

Query: 61  IEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALK 115
           IEAIQAVQSLKR K DLQQLDRVYDSKI RLLKFDMMAVLRELLRQNEC LALK
Sbjct: 61  IEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALK 113

[Close]

BLAST of Moc04g03810 vs. NCBI nr
Match: XP_023554588.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023554589.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023554590.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.0 bits (432), Expect = 8.5e-39
Identity = 96/114 (84.21%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 1   MNFLAIPPSPTTIFSSPHKLLSSGEKSSCLRLGRAEEYRRVTMRGGSENRKPLQKGRNLS 60
           M+FLA  PSP TI S P+ LL SG K S LRLGR E YRRVTMRGGSENRKPLQKGRNLS
Sbjct: 1   MSFLATTPSP-TILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLS 60

Query: 61  IEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALK 115
           IEAIQAVQSLKR K DLQQLDRVYDSKI RLLKFDMMAVLRELLRQNEC LALK
Sbjct: 61  IEAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALK 113

[Close]

BLAST of Moc04g03810 vs. NCBI nr
Match: XP_022952712.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata])

HSP 1 Score: 168.7 bits (426), Expect = 4.2e-38
Identity = 95/114 (83.33%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 1   MNFLAIPPSPTTIFSSPHKLLSSGEKSSCLRLGRAEEYRRVTMRGGSENRKPLQKGRNLS 60
           M+FLA  PS +TI S P+ LL SG K S LRLGR E YRRVTMRGGSENRKPLQKGRNLS
Sbjct: 1   MSFLATTPS-STILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLS 60

Query: 61  IEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALK 115
           IEAIQAVQSLKR K DLQQLDRVYDSKI RLLKFDMMAVLRELLRQNEC LALK
Sbjct: 61  IEAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALK 113

[Close]

BLAST of Moc04g03810 vs. NCBI nr
Match: KAG6572189.1 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.7 bits (426), Expect = 4.2e-38
Identity = 95/114 (83.33%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 1   MNFLAIPPSPTTIFSSPHKLLSSGEKSSCLRLGRAEEYRRVTMRGGSENRKPLQKGRNLS 60
           M+FLA  PS +TI S P+ LL SG K S LRLGR E YRRVTMRGGSENRKPLQKGRNLS
Sbjct: 1   MSFLATTPS-STILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLS 60

Query: 61  IEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALK 115
           IEAIQAVQSLKR K DLQQLDRVYDSKI RLLKFDMMAVLRELLRQNEC LALK
Sbjct: 61  IEAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALK 113

[Close]

BLAST of Moc04g03810 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.0e-07
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 45  GGSENRKPLQKGRNLSIEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELL 104
           G  +NR PL KGR LS EAIQ++QSLKR       L       + RL+K D+++VLRELL
Sbjct: 34  GPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTL-RPLRRLIKSDLISVLRELL 93

Query: 105 RQNECLLAL 114
           RQ+ C LA+
Sbjct: 94  RQDYCTLAV 101

[Close]

BLAST of Moc04g03810 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.9e-05
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 50  RKPLQKGRNL-SIEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNE 109
           R PL +G+ L   EA+  +  LKR+K D ++LD+   + + RLLK DM+AV+ EL RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 110 CLLALK 115
             LA+K
Sbjct: 123 TALAIK 128

[Close]

BLAST of Moc04g03810 vs. ExPASy TrEMBL
Match: A0A6J1C1T5 (pentatricopeptide repeat-containing protein At1g62350-like OS=Momordica charantia OX=3673 GN=LOC111007673 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 8.6e-53
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MNFLAIPPSPTTIFSSPHKLLSSGEKSSCLRLGRAEEYRRVTMRGGSENRKPLQKGRNLS 60
           MNFLAIPPSPTTIFSSPHKLLSSGEKSSCLRLGRAEEYRRVTMRGGSENRKPLQKGRNLS
Sbjct: 1   MNFLAIPPSPTTIFSSPHKLLSSGEKSSCLRLGRAEEYRRVTMRGGSENRKPLQKGRNLS 60

Query: 61  IEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALK 115
           IEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALK
Sbjct: 61  IEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALK 114

[Close]

BLAST of Moc04g03810 vs. ExPASy TrEMBL
Match: A0A6J1HX85 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468293 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 2.1e-38
Identity = 95/114 (83.33%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 1   MNFLAIPPSPTTIFSSPHKLLSSGEKSSCLRLGRAEEYRRVTMRGGSENRKPLQKGRNLS 60
           M+FLA  PS +TI S P+ LL SG K S LRLGR E YRRVTMRGGSENRKPLQKGRNLS
Sbjct: 1   MSFLATTPS-STILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLS 60

Query: 61  IEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALK 115
           IEAIQAVQSLKR K DLQQLDRVYDSKI RLLKFDMMAVLRELLRQNEC LALK
Sbjct: 61  IEAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALK 113

[Close]

BLAST of Moc04g03810 vs. ExPASy TrEMBL
Match: A0A6J1GL50 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111455325 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 2.1e-38
Identity = 95/114 (83.33%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 1   MNFLAIPPSPTTIFSSPHKLLSSGEKSSCLRLGRAEEYRRVTMRGGSENRKPLQKGRNLS 60
           M+FLA  PS +TI S P+ LL SG K S LRLGR E YRRVTMRGGSENRKPLQKGRNLS
Sbjct: 1   MSFLATTPS-STILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLS 60

Query: 61  IEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALK 115
           IEAIQAVQSLKR K DLQQLDRVYDSKI RLLKFDMMAVLRELLRQNEC LALK
Sbjct: 61  IEAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALK 113

[Close]

BLAST of Moc04g03810 vs. ExPASy TrEMBL
Match: A0A5D3CCT4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00060 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 6.6e-37
Identity = 93/114 (81.58%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 1   MNFLAIPPSPTTIFSSPHKLLSSGEKSSCLRLGRAEEYRRVTMRGGSENRKPLQKGRNLS 60
           M+FL   PSP TI S P KL SS  K  CL+LGRAE Y RVTMRGGSENRKPLQKGRNLS
Sbjct: 1   MSFLLTLPSP-TILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLS 60

Query: 61  IEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALK 115
           IEAIQAVQSLKR K DLQQLDRVYDSKI RLLKFDM+AVLRELLRQNEC LALK
Sbjct: 61  IEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALK 113

[Close]

BLAST of Moc04g03810 vs. ExPASy TrEMBL
Match: A0A5A7UZI6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00170 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 6.6e-37
Identity = 93/114 (81.58%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 1   MNFLAIPPSPTTIFSSPHKLLSSGEKSSCLRLGRAEEYRRVTMRGGSENRKPLQKGRNLS 60
           M+FL   PSP TI S P KL SS  K  CL+LGRAE Y RVTMRGGSENRKPLQKGRNLS
Sbjct: 1   MSFLLTLPSP-TILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLS 60

Query: 61  IEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALK 115
           IEAIQAVQSLKR K DLQQLDRVYDSKI RLLKFDM+AVLRELLRQNEC LALK
Sbjct: 61  IEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALK 113

[Close]

BLAST of Moc04g03810 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 84.3 bits (207), Expect = 9.8e-17
Identity = 53/89 (59.55%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 41  VTMRGGSENRKPLQKGRNLSIEAIQAVQSLKR---------------VKNDLQQLDRVYD 100
           + MR  S+NRKPLQ+GR LSIEAIQAVQ+LKR                 +    LDRV  
Sbjct: 487 IKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVII 546

Query: 101 SKISRLLKFDMMAVLRELLRQNECLLALK 115
           SK  RLLKFDM+AVLRELLRQNEC LALK
Sbjct: 547 SKFRRLLKFDMVAVLRELLRQNECSLALK 575

[Close]

BLAST of Moc04g03810 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 6.4e-08
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 45  GGSENRKPLQKGRNLSIEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELL 104
           G  +NR PL KGR LS EAIQ++QSLKR       L       + RL+K D+++VLRELL
Sbjct: 34  GPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTL-RPLRRLIKSDLISVLRELL 93

Query: 105 RQNECLLAL 114
           RQ+ C LA+
Sbjct: 94  RQDYCTLAV 101

[Close]

BLAST of Moc04g03810 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.5e-06
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 50  RKPLQKGRNL-SIEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNE 109
           R PL +G+ L   EA+  +  LKR+K D ++LD+   + + RLLK DM+AV+ EL RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 110 CLLALK 115
             LA+K
Sbjct: 123 TALAIK 128

[Close]

BLAST of Moc04g03810 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.5e-04
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 59  LSIEAIQAVQSLKRVKNDLQQLDRVYDSKISRLLKFDMMAVLRELLRQNECLLALK 115
           +S E + A + LKR++    +LDR   S +SRLLK D+++VL E  RQN+  L +K
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMK 56

The following BLAST results are available for this feature:

BLAST of Moc04g03810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135810.1	1.8e-52	100.00	pentatricopeptide repeat-containing protein At1g62350-like [Momordica charantia]...	[more]
XP_038888189.1	1.3e-39	84.21	protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Benincasa hispida]	[more]
XP_023554588.1	8.5e-39	84.21	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >X...	[more]
XP_022952712.1	4.2e-38	83.33	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata]	[more]
KAG6572189.1	4.2e-38	83.33	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic, partial [Cucurbita argyrosperm...	[more]

BLAST of Moc04g03810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVW6	9.0e-07	50.72	Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T...	[more]
Q9STF9	4.9e-05	45.45	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Moc04g03810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1T5	8.6e-53	100.00	pentatricopeptide repeat-containing protein At1g62350-like OS=Momordica charanti...	[more]
A0A6J1HX85	2.1e-38	83.33	protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1GL50	2.1e-38	83.33	protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 G...	[more]
A0A5D3CCT4	6.6e-37	81.58	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7UZI6	6.6e-37	81.58	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Moc04g03810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09320.1	9.8e-17	59.55	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT3G27750.1	6.4e-08	50.72	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G46870.1	3.5e-06	45.45	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	1.5e-04	42.86	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 58..122 e-value: 4.4E-13 score: 51.0
IPR044190	Protein THYLAKOID ASSEMBLY 8-like	PANTHER	PTHR47594	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 15..114
None	No IPR available	PANTHER	PTHR47594:SF4	THYLAKOID ASSEMBLY8	coord: 15..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g03810.1	Moc04g03810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0000373	Group II intron splicing
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding