Moc04g03010 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g03010
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionPathogen-induced protein CuPi1
Locationchr4: 1899116 .. 1899557 (+)
RNA-Seq ExpressionMoc04g03010
SyntenyMoc04g03010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCTTCAAAGGGCTTCGCAATGGCGGGTTTCTTAATCGTCCTCCTTCTCATCTCCTCCGAGGTTGCTGCAGCAAGGAATCTCGCCGCAAAAAATGGTCAGTTTCTTCTCTTTTATAACTTGTTTTTATTTTGATTTTGGTGTATTTAATATTCACGAGTTCCATCTCAAAACCAATCGATTAGAGGGGTAGTACATATATTATAAATCCTTGTTAGTTTCCTTATTTTATACCTGTGTAATCTTTAACATGATTGTGGCTGTTTTTGACTCATTGATCTTGACCTTTACAGCGGTGAGCCTCAGTTCAGAATTCCAAACGCCGCGCACAGGTGACCGCAATAAACCCGTCTGCGACCGTCCCCGTTACGACGATTGTGTAGAAAAACCGCCGCCGCCTACAAAAAGCTGCGATCCTTTCAATCGGAACTGCCCATAA

mRNA sequence

ATGACTTCTTCAAAGGGCTTCGCAATGGCGGGTTTCTTAATCGTCCTCCTTCTCATCTCCTCCGAGGTTGCTGCAGCAAGGAATCTCGCCGCAAAAAATGCGGTGAGCCTCAGTTCAGAATTCCAAACGCCGCGCACAGGTGACCGCAATAAACCCGTCTGCGACCGTCCCCGTTACGACGATTGTGTAGAAAAACCGCCGCCGCCTACAAAAAGCTGCGATCCTTTCAATCGGAACTGCCCATAA

Coding sequence (CDS)

ATGACTTCTTCAAAGGGCTTCGCAATGGCGGGTTTCTTAATCGTCCTCCTTCTCATCTCCTCCGAGGTTGCTGCAGCAAGGAATCTCGCCGCAAAAAATGCGGTGAGCCTCAGTTCAGAATTCCAAACGCCGCGCACAGGTGACCGCAATAAACCCGTCTGCGACCGTCCCCGTTACGACGATTGTGTAGAAAAACCGCCGCCGCCTACAAAAAGCTGCGATCCTTTCAATCGGAACTGCCCATAA

Protein sequence

MTSSKGFAMAGFLIVLLLISSEVAAARNLAAKNAVSLSSEFQTPRTGDRNKPVCDRPRYDDCVEKPPPPTKSCDPFNRNCP
Homology
[Close]
BLAST of Moc04g03010 vs. NCBI nr
Match: XP_004144528.1 (uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pathogen-induced protein CuPi1 [Cucumis sativus] >KGN43457.1 hypothetical protein Csa_020505 [Cucumis sativus])

HSP 1 Score: 53.5 bits (127), Expect = 9.7e-04
Identity = 34/84 (40.48%), Postives = 44/84 (52.38%), Query Frame = 0 

Query: 1  MTSSKG---FAMAGFLIVLLLISSEVAAARNLAAKNAVSLSSEFQTPRTGDRNKPVCD-R 60
          M+S KG     +A F   +L ISSEV AAR L           + TPRT  RNKP+CD  
Sbjct: 1  MSSGKGRGYSLLAFFFFFVLFISSEVTAARKLKMHQNNEKGIVYLTPRTAIRNKPICDGS 60

Query: 61 PRYDDCVEKPPPPTKSCDPFNRNC 81
            Y  C+ +  PP + C+P+ R C
Sbjct: 61 GPYSRCIPRSKPPKEKCNPYVRGC 84

[Close]
BLAST of Moc04g03010 vs. ExPASy TrEMBL
Match: O24512 (Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.7e-04
Identity = 34/84 (40.48%), Postives = 44/84 (52.38%), Query Frame = 0 

Query: 1  MTSSKG---FAMAGFLIVLLLISSEVAAARNLAAKNAVSLSSEFQTPRTGDRNKPVCD-R 60
          M+S KG     +A F   +L ISSEV AAR L           + TPRT  RNKP+CD  
Sbjct: 1  MSSGKGRGYSLLAFFFFFVLFISSEVTAARKLKMHQNNEKGIVYLTPRTAIRNKPICDGS 60

Query: 61 PRYDDCVEKPPPPTKSCDPFNRNC 81
            Y  C+ +  PP + C+P+ R C
Sbjct: 61 GPYSRCIPRSKPPKEKCNPYVRGC 84

The following BLAST results are available for this feature:
BLAST of Moc04g03010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144528.19.7e-0440.48uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pathogen-indu... [more]
BLAST of Moc04g03010 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc04g03010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
O245124.7e-0440.48Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 S... [more]
BLAST of Moc04g03010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g03010.1Moc04g03010.1mRNA