Moc04g02000 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g02000
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	protein THYLAKOID FORMATION1, chloroplastic
Location	chr4: 1269424 .. 1272007 (+)
RNA-Seq Expression	Moc04g02000
Synteny	Moc04g02000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTGTTAATTCCGTGTCATTCTCCGCATTAAGTCAATGTTCTGAAAGAAGATTGCTGGTTCCTTCGGCTCGTTCACTAGCCTCGAATTTCGACGGGTTTCGTTTTCGTACAAGCGTTTTCTGCCATTATTCGGGAGTTCGGACATCGAGTTACAGTTCTCGAATGGTCGTCCATTGCATGTCTGCCGGAACAGGTATTTTCTGGTGATTTGTTTTCCTTGCTCGCTTATCGGACAGTTTCATTGCCACAAATGATTGCAGAGAAAACGAGGCTCGTTTCGCGTAGTCCGGTTGAGTTTGATTTTCAAGCTGAATTTGTGTTTTGGCTTTTCCTCAATTGTAGAGATTTGTGTTTTGTTATTTTGGACGGAATTAGGCTTTCAGTAGTTCGGTTGGATTAATGCTAACTTCGGCAATGTGTTTAAGAATTCTCTAGTTCGATTTTTTACTACTTGAGTTGAGTCTAAAAACTGATCATTGTTTTGACGGCTCAGATGTGACCACCGTGGCCGAGACAAAGGCGAACTTCCTCAAGGTGTATAAGCGGCCTATTCCTAGCATTTACAATACTGTTCTGCAAGAGTTGATTGTGCAGCAGCATTTGATGAGGTATAAGAGGACATACCGTTATGATCCTGTTTTCGCCCTTGGTTTTGTTACAGTATATGATCAGCTTATGGAAGGGTACCCTAGCGATGAGGATCGAGAGGCCATTTTCCAAGCATATATTAAGGCATTGAATGAGGATCCAGAGCAATATAGGTTTGGTCATGTATTCCCCTTTGCTTTTATCATCCCTGGTCCGTATCTCTTGCCAGCTAATAATTTCAATAGCCTTATTTATAGGTAGACATTGTTAAACTAAAAAATCATTACATGATTCCATTTATAGTAAAAGAACAGTGATTCCGATTGGAACTTTATCCTCTTTTCCAGCATTCATGTGTTAATTTGGACTAGATTGATTGGTCAAATTACCTGCTATCAGATGTTAGGGGAGGGTTTAAGTAGTCTTCATGACTTTTATCTGTATCTGGAAATCAAACTAATGAATGTTTATTTTATTCAATAACTTCAAGATTCTAATGTTCTTCCCTGGAAATAATATTCCAACCTCTGAGTCTTGGACTATTCTTCCAATAATTTCAAGAAGGTTTTTTCCTTATTATAACTAGTCTTTTCTGTTATACTGTCCAGAATTGATGCTAAAAAATTGGAGGAGTGGGCTCGGTCTCAGACAGCAGCTTCATTGGTTGAGTTTGCATCAAAAGAAGGAGAAGTTGAGAGTATTTTAAAGGACATTGCAGAACGGGCAGGGGGTAAGGGGAGTTTCAGTTACAGCCGTTTTTTTGCTATTGGGCTGTTTCGACTCCTTGAATTGGCCAATGCTACCGAACCCAGTATCTTGGAAAAGGTATGAATATTTTTATGTTACAGTTCATTGAACTTATTATTCCTAAATAAAGCGATAGAAATCCCCTCTGATAGGACCTTTACTGATAGATTATATTCTTTTCTCTGAGTGCTGCCATTTGTGAAGTATAACTGCATTTCTTGCACATTACTTATCTTTTAGAGAAATTGGGGTCTTGATCGAATGGTGCTTAACCTTATTCTGTTTGAGAGAATTAAGTTCATATTTGGTTGAGGAGAAATATAACAATTTTTTAGATAGGTTTCTAGGGAGCAGCAAGCTAGTATTCATTTCAACTTGTGGAGGGTGTGCTGATCTTTCGAATGTAGTGTATGCTCTTTATTAGTTTCTGCTGGCCCTCTTCATTCAGTTTATTAGCTCTTGTGAACGGAAACATATACCTGTTCCCCTGCCCTAGGAACAACAGTTATTGCAAATGATTGCCTTAGTTGGCCGACTCTATTTAGCAAGCGTGTCTATCACAAAATATTTTGTTGTTTCAAAACATCTAAAGCTATATATTCTAACATTTTCCAAAACAGCTGAAGCCATGTGATGGAGATTTGACCAAATATTTGCATCTAACTTTTTGCTGCTTCTGAACAGCTCTGTGCTGCTTTAAATGTCAACAAAAAAAGTGTGGACCGAGACCTAGATGTCTACCGCAACCTGCTTTCAAAGTTGGTTCAGGCAAAAGAGCTCCTAAAGGAATACGTGGATAGGTAAGAGATTGTTAAGTTCCTAGTTCCAGGCATGTAGATTAACATACTCAGCAATATGCTCTTTCAAACTACCTTATTTGCATCGATTTTATGAATCCGTAATTGATTCGAAAATTTTCAACCTTGTACTCGTTAAATCTCCTGCAAGTCACTGTCATAGCATTTATAATCACTGGATATCTACAACTTCACCATCCTTGATTCTACACCTTGCTTTTTCACATATGGATCTTGGCTGAAGTCTAAATGATGTAGAATTTGGTGGATCATTGTGGGTCTAGAGTAAAGTTTTAACAATAAAGGTTCTATGACTAACCAGTGCTTTGGATTGCATTTTTACCTATAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCTCAGACAGCTAATGAGGCCATAACAAAATGCTTGGGAGAGTACAGCATGCAGACTGGTTTTTGA

mRNA sequence

ATGGCGGCTGTTAATTCCGTGTCATTCTCCGCATTAAGTCAATGTTCTGAAAGAAGATTGCTGGTTCCTTCGGCTCGTTCACTAGCCTCGAATTTCGACGGGTTTCGTTTTCGTACAAGCGTTTTCTGCCATTATTCGGGAGTTCGGACATCGAGTTACAGTTCTCGAATGGTCGTCCATTGCATGTCTGCCGGAACAGATGTGACCACCGTGGCCGAGACAAAGGCGAACTTCCTCAAGGTGTATAAGCGGCCTATTCCTAGCATTTACAATACTGTTCTGCAAGAGTTGATTGTGCAGCAGCATTTGATGAGGTATAAGAGGACATACCGTTATGATCCTGTTTTCGCCCTTGGTTTTGTTACAGTATATGATCAGCTTATGGAAGGGTACCCTAGCGATGAGGATCGAGAGGCCATTTTCCAAGCATATATTAAGGCATTGAATGAGGATCCAGAGCAATATAGAATTGATGCTAAAAAATTGGAGGAGTGGGCTCGGTCTCAGACAGCAGCTTCATTGGTTGAGTTTGCATCAAAAGAAGGAGAAGTTGAGAGTATTTTAAAGGACATTGCAGAACGGGCAGGGGGTAAGGGGAGTTTCAGTTACAGCCGTTTTTTTGCTATTGGGCTGTTTCGACTCCTTGAATTGGCCAATGCTACCGAACCCAGTATCTTGGAAAAGCTCTGTGCTGCTTTAAATGTCAACAAAAAAAGTGTGGACCGAGACCTAGATGTCTACCGCAACCTGCTTTCAAAGTTGGTTCAGGCAAAAGAGCTCCTAAAGGAATACGTGGATAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCTCAGACAGCTAATGAGGCCATAACAAAATGCTTGGGAGAGTACAGCATGCAGACTGGTTTTTGA

Coding sequence (CDS)

ATGGCGGCTGTTAATTCCGTGTCATTCTCCGCATTAAGTCAATGTTCTGAAAGAAGATTGCTGGTTCCTTCGGCTCGTTCACTAGCCTCGAATTTCGACGGGTTTCGTTTTCGTACAAGCGTTTTCTGCCATTATTCGGGAGTTCGGACATCGAGTTACAGTTCTCGAATGGTCGTCCATTGCATGTCTGCCGGAACAGATGTGACCACCGTGGCCGAGACAAAGGCGAACTTCCTCAAGGTGTATAAGCGGCCTATTCCTAGCATTTACAATACTGTTCTGCAAGAGTTGATTGTGCAGCAGCATTTGATGAGGTATAAGAGGACATACCGTTATGATCCTGTTTTCGCCCTTGGTTTTGTTACAGTATATGATCAGCTTATGGAAGGGTACCCTAGCGATGAGGATCGAGAGGCCATTTTCCAAGCATATATTAAGGCATTGAATGAGGATCCAGAGCAATATAGAATTGATGCTAAAAAATTGGAGGAGTGGGCTCGGTCTCAGACAGCAGCTTCATTGGTTGAGTTTGCATCAAAAGAAGGAGAAGTTGAGAGTATTTTAAAGGACATTGCAGAACGGGCAGGGGGTAAGGGGAGTTTCAGTTACAGCCGTTTTTTTGCTATTGGGCTGTTTCGACTCCTTGAATTGGCCAATGCTACCGAACCCAGTATCTTGGAAAAGCTCTGTGCTGCTTTAAATGTCAACAAAAAAAGTGTGGACCGAGACCTAGATGTCTACCGCAACCTGCTTTCAAAGTTGGTTCAGGCAAAAGAGCTCCTAAAGGAATACGTGGATAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCTCAGACAGCTAATGAGGCCATAACAAAATGCTTGGGAGAGTACAGCATGCAGACTGGTTTTTGA

Protein sequence

MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVHCMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASKEGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGF

Homology

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BLAST of Moc04g02000 vs. NCBI nr
Match: XP_022136235.1 (protein THYLAKOID FORMATION1, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 572.8 bits (1475), Expect = 1.7e-159
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0


Query: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60
           MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH
Sbjct: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60

Query: 61  CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 180
           VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 180

Query: 181 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV 240
           EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV
Sbjct: 181 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGF 299
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGF
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGF 298

[Close]

BLAST of Moc04g02000 vs. NCBI nr
Match: XP_023554556.1 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 537.3 bits (1383), Expect = 8.1e-149
Identity = 274/297 (92.26%), Postives = 292/297 (98.32%), Query Frame = 0


Query: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60
           MAAVNSVSF+ALSQCS+RRL +PSARSLAS+FDGFRFR SVFCHYSGVRTSS+SSRMV+H
Sbjct: 1   MAAVNSVSFTALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60

Query: 61  CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CM++GTDVTTVAETKANFLK YKRPIPSIYNTV+QELIVQQHLMRYK+TYRYDPVFALGF
Sbjct: 61  CMASGTDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFALGF 120

Query: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 180
           VTVYD+LMEGYPSDEDR+AIFQAYI ALNEDPEQYRIDA+KLEEWARSQTAASLVEFAS+
Sbjct: 121 VTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV 240
           EGEVESILKDIAERAGGKG+FSYSRFFAIGLFRLLELANA+EPSILEKLCAALNV+KK V
Sbjct: 181 EGEVESILKDIAERAGGKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTG 298
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTA+EAITKCLGEYSMQTG
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTG 297

[Close]

BLAST of Moc04g02000 vs. NCBI nr
Match: XP_022969189.1 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 534.6 bits (1376), Expect = 5.3e-148
Identity = 273/297 (91.92%), Postives = 290/297 (97.64%), Query Frame = 0


Query: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60
           MAAVNSVSFS LSQCS+RRL +PSARSLAS+FDGFRFR SVFCHYSGVRTSS+SSRMV+H
Sbjct: 1   MAAVNSVSFSGLSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60

Query: 61  CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CM++GTDVTTVAETKANFLK YKRPIPSIYNTV+QELIVQQHLMRYK+TYRYDPVFALGF
Sbjct: 61  CMASGTDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFALGF 120

Query: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 180
           VTVYD+LMEGYPSDEDR+AIFQAYI ALNEDPEQYRIDA+KLEEWARSQTAASLVEFAS+
Sbjct: 121 VTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV 240
           EGEVESILKDIAERAG KG+FSYSRFFAIGLFRLLELANA+EPSILEKLCAALNV+KK V
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTG 298
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTA+EAITKCLGEYSMQTG
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTG 297

[Close]

BLAST of Moc04g02000 vs. NCBI nr
Match: XP_022952157.1 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 533.1 bits (1372), Expect = 1.5e-147
Identity = 272/297 (91.58%), Postives = 290/297 (97.64%), Query Frame = 0


Query: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60
           MAAVNSVSFSALSQCS+RRL +PSARSLAS+FDGFRFR SVFCHYSGVRT S++SRMV+H
Sbjct: 1   MAAVNSVSFSALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTPSFNSRMVIH 60

Query: 61  CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CM++GTDVTTVAETKANFLK YKRPIPSIYNTV+QELIVQQHLMRYK+TYRYDPVFALGF
Sbjct: 61  CMASGTDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFALGF 120

Query: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 180
           VTVYD+LMEGYPSDEDR+AIFQAYI ALNEDPEQYRIDA+KLEEWARSQTAASLVEFAS+
Sbjct: 121 VTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV 240
           EGEVESILKDIAERAG KG+FSYSRFFAIGLFRLLELANA+EPSILEKLCAALNV+KK V
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTG 298
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTA+EAITKCLGEYSMQTG
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTG 297

[Close]

BLAST of Moc04g02000 vs. NCBI nr
Match: XP_008455361.1 (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo] >KAA0031606.1 protein THYLAKOID FORMATION1 [Cucumis melo var. makuwa] >TYK07058.1 protein THYLAKOID FORMATION1 [Cucumis melo var. makuwa])

HSP 1 Score: 532.3 bits (1370), Expect = 2.6e-147
Identity = 272/297 (91.58%), Postives = 287/297 (96.63%), Query Frame = 0


Query: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60
           MAAVNS+SFS L+QCS+RR  VPS+RSL+SNFDGFRFRTS+F HYS VR S++SSRMV+H
Sbjct: 1   MAAVNSISFSTLNQCSDRRFPVPSSRSLSSNFDGFRFRTSLFTHYSRVRPSTFSSRMVIH 60

Query: 61  CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETK NFLK YKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 180
           VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDA+KLEEWARSQTAASLVEFAS+
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV 240
           EGEVESILKDIAERAG KG+FSYSRFFAIGLFRLLELANATEPSILEKLCAALN++KK V
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTG 298
           DRDLDVYRNLLSKLVQAKELLKEY+DREKKKRDERAGSQTANEAITKCLGEYSMQTG
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYIDREKKKRDERAGSQTANEAITKCLGEYSMQTG 297

[Close]

BLAST of Moc04g02000 vs. ExPASy Swiss-Prot
Match: Q7XAB8 (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum OX=4113 GN=THF1 PE=2 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 1.3e-109
Identity = 210/293 (71.67%), Postives = 247/293 (84.30%), Query Frame = 0


Query: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60
           MAAV SVSFSA++Q +ER+  V S+RS+    D FRFR++       VR+S+ +SR VVH
Sbjct: 1   MAAVTSVSFSAITQSAERKSSVSSSRSI----DTFRFRSNFSFDSVNVRSSNSTSRFVVH 60

Query: 61  C-MSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALG 120
           C  S+  D+ TVA+TK  FL  YKRPIP++YNTVLQELIVQQHL RYK++Y+YDPVFALG
Sbjct: 61  CTSSSAADLPTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALG 120

Query: 121 FVTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFAS 180
           FVTVYDQLMEGYPS+EDR AIF+AYI+AL EDPEQYR DA+KLEEWAR+Q A +LV+F+S
Sbjct: 121 FVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSS 180

Query: 181 KEGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKS 240
           KEGE+E+I KDIA+RAG K  F YSR FA+GLFRLLELAN T+P+ILEKLCAALNVNKKS
Sbjct: 181 KEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEY 293
           VDRDLDVYRNLLSKLVQAKELLKEYV+REKKKR ER  +Q ANE +TKCLG+Y
Sbjct: 241 VDRDLDVYRNLLSKLVQAKELLKEYVEREKKKRGERE-TQKANETVTKCLGDY 288

[Close]

BLAST of Moc04g02000 vs. ExPASy Swiss-Prot
Match: Q9SKT0 (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THF1 PE=1 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 4.0e-106
Identity = 206/291 (70.79%), Postives = 248/291 (85.22%), Query Frame = 0


Query: 3   AVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYS-SRMVVHC 62
           A++S+SF AL Q S++     S+R LAS          +   +S +  +S S S+ ++HC
Sbjct: 5   AISSLSFPALGQ-SDKISNFASSRPLAS-------AIRICTKFSRLSLNSRSTSKSLIHC 64

Query: 63  MSAGT-DVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 122
           MS  T DV  V+ETK+ FLK YKRPIPSIYNTVLQELIVQQHLMRYK+TYRYDPVFALGF
Sbjct: 65  MSNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGF 124

Query: 123 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 182
           VTVYDQLMEGYPSD+DR+AIF+AYI+ALNEDP+QYRIDA+K+EEWARSQT+ASLV+F+SK
Sbjct: 125 VTVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSK 184

Query: 183 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV 242
           EG++E++LKDIA RAG K  FSYSRFFA+GLFRLLELA+AT+P++L+KLCA+LN+NKKSV
Sbjct: 185 EGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSV 244

Query: 243 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGE 292
           DRDLDVYRNLLSKLVQAKELLKEYV+REKKK+ ERA SQ ANE I+KCLG+
Sbjct: 245 DRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGD 287

[Close]

BLAST of Moc04g02000 vs. ExPASy Swiss-Prot
Match: Q84PB7 (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=THF1 PE=2 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 3.3e-100
Identity = 199/288 (69.10%), Postives = 235/288 (81.60%), Query Frame = 0


Query: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60
           MAA++S+ F+AL + ++ R   PS  + A+         SV             SR VV 
Sbjct: 1   MAAISSLPFAALRRAADCR---PSTAAAAAGAGAGAVVLSV--------RPRRGSRSVVR 60

Query: 61  CMSAGTDV-TTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALG 120
           C++   DV  TVAETK NFLK YKRPI SIY+TVLQEL+VQQHLMRYK TY+YD VFALG
Sbjct: 61  CVATAGDVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALG 120

Query: 121 FVTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFAS 180
           FVTVYDQLMEGYPS+EDR+AIF+AYI ALNEDPEQYR DA+K+EEWARSQ   SLVEF+S
Sbjct: 121 FVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSS 180

Query: 181 KEGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKS 240
           K+GE+E+ILKDI+ERA GKGSFSYSRFFA+GLFRLLELANATEP+IL+KLCAALN+NK+S
Sbjct: 181 KDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITK 288
           VDRDLDVYRN+LSKLVQAKELLKEYV+REKKKR+ER+ +  +NEA+TK
Sbjct: 241 VDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277

[Close]

BLAST of Moc04g02000 vs. ExPASy Swiss-Prot
Match: B0C3M8 (Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=thf1 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-35
Identity = 81/219 (36.99%), Postives = 138/219 (63.01%), Query Frame = 0


Query: 67  DVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQ 126
           ++ TV++TK  F  ++ RP+ S+Y  V++EL+V+ HL+R    +RYDP+FALG  T +D+
Sbjct: 3   NLRTVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDR 62

Query: 127 LMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEF---ASKEG- 186
            M+GY  + D++AIF A  KA   DP Q + D ++L E A+S++A  ++++   A+  G 
Sbjct: 63  FMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGG 122

Query: 187 -EVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELA--NATE-----PSILEKLCAALN 246
            E++  L++IA+       F YSR FAIGLF LLEL+  N T+        L  +C  LN
Sbjct: 123 DELQWQLRNIAQNP----KFKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLN 182

Query: 247 VNKKSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRD 274
           +++  + +DL++YR  L K+ Q ++ + + ++ +KK+R+
Sbjct: 183 ISESKLQKDLEIYRGNLDKIAQVRQAMDDILEAQKKRRE 217

[Close]

BLAST of Moc04g02000 vs. ExPASy Swiss-Prot
Match: Q116P5 (Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=thf1 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.4e-33
Identity = 80/216 (37.04%), Postives = 129/216 (59.72%), Query Frame = 0


Query: 70  TVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLME 129
           TV++TK  F   + RPI SIYN V++EL+V+ HL+     Y Y+P +ALG VT +D+ M+
Sbjct: 6   TVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQ 65

Query: 130 GYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEF--ASKEGEVESI 189
           GY   ED+ +IF A I+   EDP +YR DAK LE+ A   +A+ ++ +   SK  +    
Sbjct: 66  GYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQY 125

Query: 190 LKDIAERAGGKGSFSYSRFFAIGLFRLLELANA-------TEPSILEKLCAALNVNKKSV 249
           L+D          F YSR FAIGLF LLE+ +             L+K+C +LN+ ++ +
Sbjct: 126 LQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLVEEKL 185

Query: 250 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERA 277
            +D+D+Y + L ++ QA+  +++ +   +KKR++R+
Sbjct: 186 LKDIDLYLSNLERVAQARSAMEDTLAAMRKKREKRS 221

[Close]

BLAST of Moc04g02000 vs. ExPASy TrEMBL
Match: A0A6J1C3B8 (protein THYLAKOID FORMATION1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007981 PE=3 SV=1)

HSP 1 Score: 572.8 bits (1475), Expect = 8.5e-160
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0


Query: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60
           MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH
Sbjct: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60

Query: 61  CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 180
           VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 180

Query: 181 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV 240
           EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV
Sbjct: 181 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGF 299
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGF
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGF 298

[Close]

BLAST of Moc04g02000 vs. ExPASy TrEMBL
Match: A0A6J1I1V8 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468259 PE=3 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 2.6e-148
Identity = 273/297 (91.92%), Postives = 290/297 (97.64%), Query Frame = 0


Query: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60
           MAAVNSVSFS LSQCS+RRL +PSARSLAS+FDGFRFR SVFCHYSGVRTSS+SSRMV+H
Sbjct: 1   MAAVNSVSFSGLSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60

Query: 61  CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CM++GTDVTTVAETKANFLK YKRPIPSIYNTV+QELIVQQHLMRYK+TYRYDPVFALGF
Sbjct: 61  CMASGTDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFALGF 120

Query: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 180
           VTVYD+LMEGYPSDEDR+AIFQAYI ALNEDPEQYRIDA+KLEEWARSQTAASLVEFAS+
Sbjct: 121 VTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV 240
           EGEVESILKDIAERAG KG+FSYSRFFAIGLFRLLELANA+EPSILEKLCAALNV+KK V
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTG 298
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTA+EAITKCLGEYSMQTG
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTG 297

[Close]

BLAST of Moc04g02000 vs. ExPASy TrEMBL
Match: A0A6J1GJN0 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454918 PE=3 SV=1)

HSP 1 Score: 533.1 bits (1372), Expect = 7.4e-148
Identity = 272/297 (91.58%), Postives = 290/297 (97.64%), Query Frame = 0


Query: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60
           MAAVNSVSFSALSQCS+RRL +PSARSLAS+FDGFRFR SVFCHYSGVRT S++SRMV+H
Sbjct: 1   MAAVNSVSFSALSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTPSFNSRMVIH 60

Query: 61  CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CM++GTDVTTVAETKANFLK YKRPIPSIYNTV+QELIVQQHLMRYK+TYRYDPVFALGF
Sbjct: 61  CMASGTDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFALGF 120

Query: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 180
           VTVYD+LMEGYPSDEDR+AIFQAYI ALNEDPEQYRIDA+KLEEWARSQTAASLVEFAS+
Sbjct: 121 VTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV 240
           EGEVESILKDIAERAG KG+FSYSRFFAIGLFRLLELANA+EPSILEKLCAALNV+KK V
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANASEPSILEKLCAALNVDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTG 298
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTA+EAITKCLGEYSMQTG
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTASEAITKCLGEYSMQTG 297

[Close]

BLAST of Moc04g02000 vs. ExPASy TrEMBL
Match: A0A5D3C7D3 (Protein THYLAKOID FORMATION1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003760 PE=3 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 1.3e-147
Identity = 272/297 (91.58%), Postives = 287/297 (96.63%), Query Frame = 0


Query: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60
           MAAVNS+SFS L+QCS+RR  VPS+RSL+SNFDGFRFRTS+F HYS VR S++SSRMV+H
Sbjct: 1   MAAVNSISFSTLNQCSDRRFPVPSSRSLSSNFDGFRFRTSLFTHYSRVRPSTFSSRMVIH 60

Query: 61  CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETK NFLK YKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 180
           VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDA+KLEEWARSQTAASLVEFAS+
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV 240
           EGEVESILKDIAERAG KG+FSYSRFFAIGLFRLLELANATEPSILEKLCAALN++KK V
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTG 298
           DRDLDVYRNLLSKLVQAKELLKEY+DREKKKRDERAGSQTANEAITKCLGEYSMQTG
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYIDREKKKRDERAGSQTANEAITKCLGEYSMQTG 297

[Close]

BLAST of Moc04g02000 vs. ExPASy TrEMBL
Match: A0A1S3C0V5 (protein THYLAKOID FORMATION1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495547 PE=3 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 1.3e-147
Identity = 272/297 (91.58%), Postives = 287/297 (96.63%), Query Frame = 0


Query: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60
           MAAVNS+SFS L+QCS+RR  VPS+RSL+SNFDGFRFRTS+F HYS VR S++SSRMV+H
Sbjct: 1   MAAVNSISFSTLNQCSDRRFPVPSSRSLSSNFDGFRFRTSLFTHYSRVRPSTFSSRMVIH 60

Query: 61  CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETK NFLK YKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 180
           VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDA+KLEEWARSQTAASLVEFAS+
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV 240
           EGEVESILKDIAERAG KG+FSYSRFFAIGLFRLLELANATEPSILEKLCAALN++KK V
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTG 298
           DRDLDVYRNLLSKLVQAKELLKEY+DREKKKRDERAGSQTANEAITKCLGEYSMQTG
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYIDREKKKRDERAGSQTANEAITKCLGEYSMQTG 297

[Close]

BLAST of Moc04g02000 vs. TAIR 10
Match: AT2G20890.1 (photosystem II reaction center PSB29 protein )

HSP 1 Score: 386.0 bits (990), Expect = 2.8e-107
Identity = 206/291 (70.79%), Postives = 248/291 (85.22%), Query Frame = 0


Query: 3   AVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYS-SRMVVHC 62
           A++S+SF AL Q S++     S+R LAS          +   +S +  +S S S+ ++HC
Sbjct: 5   AISSLSFPALGQ-SDKISNFASSRPLAS-------AIRICTKFSRLSLNSRSTSKSLIHC 64

Query: 63  MSAGT-DVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 122
           MS  T DV  V+ETK+ FLK YKRPIPSIYNTVLQELIVQQHLMRYK+TYRYDPVFALGF
Sbjct: 65  MSNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGF 124

Query: 123 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 182
           VTVYDQLMEGYPSD+DR+AIF+AYI+ALNEDP+QYRIDA+K+EEWARSQT+ASLV+F+SK
Sbjct: 125 VTVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSK 184

Query: 183 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV 242
           EG++E++LKDIA RAG K  FSYSRFFA+GLFRLLELA+AT+P++L+KLCA+LN+NKKSV
Sbjct: 185 EGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSV 244

Query: 243 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGE 292
           DRDLDVYRNLLSKLVQAKELLKEYV+REKKK+ ERA SQ ANE I+KCLG+
Sbjct: 245 DRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGD 287

The following BLAST results are available for this feature:

BLAST of Moc04g02000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136235.1	1.7e-159	100.00	protein THYLAKOID FORMATION1, chloroplastic isoform X1 [Momordica charantia]	[more]
XP_023554556.1	8.1e-149	92.26	protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 [Cucurbita pepo subs...	[more]
XP_022969189.1	5.3e-148	91.92	protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 [Cucurbita maxima]	[more]
XP_022952157.1	1.5e-147	91.58	protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 [Cucurbita moschata]	[more]
XP_008455361.1	2.6e-147	91.58	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo] >KAA003160...	[more]

BLAST of Moc04g02000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XAB8	1.3e-109	71.67	Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum OX=4113 GN=THF1...	[more]
Q9SKT0	4.0e-106	70.79	Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q84PB7	3.3e-100	69.10	Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica OX=3...	[more]
B0C3M8	1.6e-35	36.99	Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=thf1 PE=3 ...	[more]
Q116P5	3.4e-33	37.04	Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=thf1 PE=3 ...	[more]

BLAST of Moc04g02000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C3B8	8.5e-160	100.00	protein THYLAKOID FORMATION1, chloroplastic isoform X1 OS=Momordica charantia OX...	[more]
A0A6J1I1V8	2.6e-148	91.92	protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 OS=Cucurbita maxima ...	[more]
A0A6J1GJN0	7.4e-148	91.58	protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 OS=Cucurbita moschat...	[more]
A0A5D3C7D3	1.3e-147	91.58	Protein THYLAKOID FORMATION1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C0V5	1.3e-147	91.58	protein THYLAKOID FORMATION1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495...	[more]

BLAST of Moc04g02000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20890.1	2.8e-107	70.79	photosystem II reaction center PSB29 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 247..274
None	No IPR available	PANTHER	PTHR34793:SF7	PHOTOSYSTEM II BIOGENESIS PROTEIN	coord: 1..286
IPR017499	Protein Thf1	PFAM	PF11264	ThylakoidFormat	coord: 70..275 e-value: 1.3E-75 score: 253.8
IPR017499	Protein Thf1	TIGRFAM	TIGR03060	TIGR03060	coord: 67..272 e-value: 1.6E-47 score: 160.0
IPR017499	Protein Thf1	PANTHER	PTHR34793	PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC	coord: 1..286
IPR017499	Protein Thf1	HAMAP	MF_01843	Thf1	coord: 65..273 score: 22.203957

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g02000.1	Moc04g02000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0045037	protein import into chloroplast stroma
biological_process	GO:0045038	protein import into chloroplast thylakoid membrane
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0015979	photosynthesis