Moc04g01170 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g01170
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10
Location	chr4: 789527 .. 790066 (+)
RNA-Seq Expression	Moc04g01170
Synteny	Moc04g01170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATTGAAGGCAGAGAAGGAGGAGGAAAAGATTTTTCTGAAGGATCTTCATCGGCGCAACCAGTTGGATCAACCCCAAGTCGATATGAATCACAGAAACGTAGAGATTGGAACACATTTTGTCAATATTTGAAGAATCAAAGGCCCTCAGTCCCACTTTCTAACTGCAGCTGCAATCATGTTCTGGAATTCCTCCGCTATCTTGATCAGTTCGGAAAAACAAAAGTTCATCATCATGGTTGCATGTTTTATGGACATCCCGAGCCACCAGCGCCATGTACTTGTCCACTTAGGCAAGCTTGGGGGAGTTTGGATGCTCTTATCGGGAGATTGAGAGCTGCCTATGAGGAAAATGGTGGATCGCCAGAAACAAATCCTTTTGCTAGTGGTGCGATTAGGGTTTATCTCAGGGATGTGAGAGAGTGTCAAGCGAAAGCAAGAGGAATTCCTTACAAAAAGAACAAGAAGAAGAAGCCAGTTCAAAACAATGAAACCGAAGAATCAAGCTCTATGACGATGTTGCACTTTGCCCCTTGA

mRNA sequence

ATGTCTATTGAAGGCAGAGAAGGAGGAGGAAAAGATTTTTCTGAAGGATCTTCATCGGCGCAACCAGTTGGATCAACCCCAAGTCGATATGAATCACAGAAACGTAGAGATTGGAACACATTTTGTCAATATTTGAAGAATCAAAGGCCCTCAGTCCCACTTTCTAACTGCAGCTGCAATCATGTTCTGGAATTCCTCCGCTATCTTGATCAGTTCGGAAAAACAAAAGTTCATCATCATGGTTGCATGTTTTATGGACATCCCGAGCCACCAGCGCCATGTACTTGTCCACTTAGGCAAGCTTGGGGGAGTTTGGATGCTCTTATCGGGAGATTGAGAGCTGCCTATGAGGAAAATGGTGGATCGCCAGAAACAAATCCTTTTGCTAGTGGTGCGATTAGGGTTTATCTCAGGGATGTGAGAGAGTGTCAAGCGAAAGCAAGAGGAATTCCTTACAAAAAGAACAAGAAGAAGAAGCCAGTTCAAAACAATGAAACCGAAGAATCAAGCTCTATGACGATGTTGCACTTTGCCCCTTGA

Coding sequence (CDS)

ATGTCTATTGAAGGCAGAGAAGGAGGAGGAAAAGATTTTTCTGAAGGATCTTCATCGGCGCAACCAGTTGGATCAACCCCAAGTCGATATGAATCACAGAAACGTAGAGATTGGAACACATTTTGTCAATATTTGAAGAATCAAAGGCCCTCAGTCCCACTTTCTAACTGCAGCTGCAATCATGTTCTGGAATTCCTCCGCTATCTTGATCAGTTCGGAAAAACAAAAGTTCATCATCATGGTTGCATGTTTTATGGACATCCCGAGCCACCAGCGCCATGTACTTGTCCACTTAGGCAAGCTTGGGGGAGTTTGGATGCTCTTATCGGGAGATTGAGAGCTGCCTATGAGGAAAATGGTGGATCGCCAGAAACAAATCCTTTTGCTAGTGGTGCGATTAGGGTTTATCTCAGGGATGTGAGAGAGTGTCAAGCGAAAGCAAGAGGAATTCCTTACAAAAAGAACAAGAAGAAGAAGCCAGTTCAAAACAATGAAACCGAAGAATCAAGCTCTATGACGATGTTGCACTTTGCCCCTTGA

Protein sequence

MSIEGREGGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNETEESSSMTMLHFAP

Homology

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BLAST of Moc04g01170 vs. NCBI nr
Match: XP_022147983.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Momordica charantia])

HSP 1 Score: 379.0 bits (972), Expect = 2.2e-101
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MSIEGREGGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCN 60
           MSIEGREGGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCN
Sbjct: 1   MSIEGREGGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENG 120
           HVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENG
Sbjct: 61  HVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNETEESSSMTMLHFAP 180
           GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNETEESSSMTMLHFAP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNETEESSSMTMLHFAP 179

[Close]

BLAST of Moc04g01170 vs. NCBI nr
Match: KAG6589232.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 304.7 bits (779), Expect = 5.3e-79
Identity = 147/176 (83.52%), Postives = 151/176 (85.80%), Query Frame = 0


Query: 7   EGGGKDFSEGSSSA---QPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVL 66
           EG  KDFSEGSSS    QPVGS PSRYESQKRRDWNTFCQYLKNQRP VPLS+CSCNHVL
Sbjct: 4   EGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVL 63

Query: 67  EFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSP 126
           EFLRYLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GGSP
Sbjct: 64  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSP 123

Query: 127 ETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNETEESSSMTMLHFAP 180
           ETNPFASGAIRVYLRDVRECQAKARGIPYKK KKK    N       S +M+HF P
Sbjct: 124 ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179

[Close]

BLAST of Moc04g01170 vs. NCBI nr
Match: XP_023530720.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 304.3 bits (778), Expect = 7.0e-79
Identity = 147/176 (83.52%), Postives = 151/176 (85.80%), Query Frame = 0


Query: 7   EGGGKDFSEGSSSA---QPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVL 66
           EGG KDFSEGSSS    QP GS PSRYESQKRRDWNTFCQYLKNQRP VPLS+CSCNHVL
Sbjct: 4   EGGTKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVL 63

Query: 67  EFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSP 126
           EFLRYLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GGSP
Sbjct: 64  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSP 123

Query: 127 ETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNETEESSSMTMLHFAP 180
           ETNPFASGAIRVYLRDVRECQAKARGIPYKK KKK    N       S +M+HF P
Sbjct: 124 ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179

[Close]

BLAST of Moc04g01170 vs. NCBI nr
Match: XP_022930813.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 302.0 bits (772), Expect = 3.5e-78
Identity = 146/176 (82.95%), Postives = 150/176 (85.23%), Query Frame = 0


Query: 7   EGGGKDFSEGSSSA---QPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVL 66
           EG  KDFSEGSSS    QP GS PSRYESQKRRDWNTFCQYLKNQRP VPLS+CSCNHVL
Sbjct: 4   EGATKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVL 63

Query: 67  EFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSP 126
           EFLRYLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GGSP
Sbjct: 64  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSP 123

Query: 127 ETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNETEESSSMTMLHFAP 180
           ETNPFASGAIRVYLRDVRECQAKARGIPYKK KKK    N       S +M+HF P
Sbjct: 124 ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179

[Close]

BLAST of Moc04g01170 vs. NCBI nr
Match: KAG7022931.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 300.1 bits (767), Expect = 1.3e-77
Identity = 147/176 (83.52%), Postives = 151/176 (85.80%), Query Frame = 0


Query: 7   EGGGKDFSEGSSSA---QPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVL 66
           EG  KDFSEGSSS    QPVGS PSRYESQKRRDWNTFCQYLKNQRP VPLS+CSCNHVL
Sbjct: 4   EGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVL 63

Query: 67  EFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSP 126
           EFLRYLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GGSP
Sbjct: 64  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSP 123

Query: 127 ETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNETEESSSMTMLHFAP 180
           ETNPFASGAIRVYLRDVRECQAKARGIPYKK KKK    N       S +M+HF P
Sbjct: 124 ETNPFASGAIRVYLRDVRECQAKARGIPYKK-KKKTTTTNQSKGAEDSTSMMHFVP 178

[Close]

BLAST of Moc04g01170 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 4.5e-73
Identity = 135/164 (82.32%), Postives = 140/164 (85.37%), Query Frame = 0


Query: 10  GKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVLEFLRYL 69
           GK   E S S  PV  TPSRYESQKRRDWNTF QYLKNQRP VP+S+CSCNHVL+FLRYL
Sbjct: 8   GKSLMESSGSEPPV--TPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYL 67

Query: 70  DQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFA 129
           DQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG PETNPFA
Sbjct: 68  DQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFA 127

Query: 130 SGAIRVYLRDVRECQAKARGIPYKKNKKKKPV--QNNETEESSS 172
           SGAIRVYLR+VRECQAKARGIPYKK KKKKP        E+SSS
Sbjct: 128 SGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSS 169

[Close]

BLAST of Moc04g01170 vs. ExPASy Swiss-Prot
Match: Q7XDD0 (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 6.8e-61
Identity = 108/153 (70.59%), Postives = 126/153 (82.35%), Query Frame = 0


Query: 8   GGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVLEFLR 67
           GGG   + G++SA   G++PSRYESQKRRDWNTF QYL+N RP + L+ CS  HVLEFLR
Sbjct: 19  GGGGGMATGATSASAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLR 78

Query: 68  YLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNP 127
           YLDQFGKTKVH   C F+GHP PPAPC CPLRQAWGSLDAL+GRLRAAYEENGG PE NP
Sbjct: 79  YLDQFGKTKVHAPACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNP 138

Query: 128 FASGAIRVYLRDVRECQAKARGIPYKKNKKKKP 161
           F + A+R+YLR+VRE QA+ARG+ Y+K K+KKP
Sbjct: 139 FGARAVRLYLREVREHQARARGVSYEKKKRKKP 171

[Close]

BLAST of Moc04g01170 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-59
Identity = 109/171 (63.74%), Postives = 135/171 (78.95%), Query Frame = 0


Query: 2   SIEGREGGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNH 61
           S+ G  GG  + ++  SS+    +  SRYE+QKRRDWNTF QYL+N RP + LS CS  H
Sbjct: 29  SVTGATGG--EATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAH 88

Query: 62  VLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG 121
           VLEFLRYLDQFGKTKVH + C FYGHP PPAPC CPLRQAWGSLDALIGRLRAA+EENGG
Sbjct: 89  VLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG 148

Query: 122 SPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNETEESSSM 173
            PETNPF + A+R+YLR+VR+ Q+KARG+ Y+K K+K+P+ ++ T  SS++
Sbjct: 149 KPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSSAV 197

[Close]

BLAST of Moc04g01170 vs. ExPASy Swiss-Prot
Match: A2XVI8 (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.9e-59
Identity = 109/160 (68.12%), Postives = 128/160 (80.00%), Query Frame = 0


Query: 5   GREGGGKDFSEGSSSAQPVGS--TPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHV 64
           G  GGG   S  SS +   G+  +PSRYE+QKRRDWNTF QYL+N RP + L+ CS  HV
Sbjct: 15  GNGGGGGSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHV 74

Query: 65  LEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGS 124
           LEFLRYLDQFGKTKVH   C F+GHP PPAPC CPLRQAWGSLDAL+GRLRAA+EENGG 
Sbjct: 75  LEFLRYLDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGR 134

Query: 125 PETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQ 163
           PE+NPFA+ A+R+YLR+VRE QA+ARG+ Y+K K+KKP Q
Sbjct: 135 PESNPFAARAVRLYLREVREHQARARGVSYEKKKRKKPQQ 174

[Close]

BLAST of Moc04g01170 vs. ExPASy Swiss-Prot
Match: Q7XRS1 (Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2)

HSP 1 Score: 229.6 bits (584), Expect = 2.9e-59
Identity = 109/160 (68.12%), Postives = 128/160 (80.00%), Query Frame = 0


Query: 5   GREGGGKDFSEGSSSAQPVGS--TPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHV 64
           G  GGG   S  SS +   G+  +PSRYE+QKRRDWNTF QYL+N RP + L+ CS  HV
Sbjct: 15  GNGGGGGSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHV 74

Query: 65  LEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGS 124
           LEFLRYLDQFGKTKVH   C F+GHP PPAPC CPLRQAWGSLDAL+GRLRAA+EENGG 
Sbjct: 75  LEFLRYLDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGR 134

Query: 125 PETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQ 163
           PE+NPFA+ A+R+YLR+VRE QA+ARG+ Y+K K+KKP Q
Sbjct: 135 PESNPFAARAVRLYLREVREHQARARGVSYEKKKRKKPQQ 174

[Close]

BLAST of Moc04g01170 vs. ExPASy TrEMBL
Match: A0A6J1D2T4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Momordica charantia OX=3673 GN=LOC111016777 PE=3 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.1e-101
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MSIEGREGGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCN 60
           MSIEGREGGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCN
Sbjct: 1   MSIEGREGGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENG 120
           HVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENG
Sbjct: 61  HVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNETEESSSMTMLHFAP 180
           GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNETEESSSMTMLHFAP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNETEESSSMTMLHFAP 179

[Close]

BLAST of Moc04g01170 vs. ExPASy TrEMBL
Match: A0A6J1EWG4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111437182 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.7e-78
Identity = 146/176 (82.95%), Postives = 150/176 (85.23%), Query Frame = 0


Query: 7   EGGGKDFSEGSSSA---QPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVL 66
           EG  KDFSEGSSS    QP GS PSRYESQKRRDWNTFCQYLKNQRP VPLS+CSCNHVL
Sbjct: 4   EGATKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVL 63

Query: 67  EFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSP 126
           EFLRYLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GGSP
Sbjct: 64  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSP 123

Query: 127 ETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNETEESSSMTMLHFAP 180
           ETNPFASGAIRVYLRDVRECQAKARGIPYKK KKK    N       S +M+HF P
Sbjct: 124 ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179

[Close]

BLAST of Moc04g01170 vs. ExPASy TrEMBL
Match: A0A6J1JNV9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111486170 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.9e-77
Identity = 146/176 (82.95%), Postives = 150/176 (85.23%), Query Frame = 0


Query: 7   EGGGKDFSEGSSSA---QPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVL 66
           EGG KDFSEGSSS    QP G  PSRYESQKRRDWNTFCQYLKNQRP VPLS+CSCNHVL
Sbjct: 4   EGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVL 63

Query: 67  EFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSP 126
           EFLRYLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GGSP
Sbjct: 64  EFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSP 123

Query: 127 ETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNETEESSSMTMLHFAP 180
           ETNPFASGAIRVYLRDVRECQAKARGIPYKK KKK    N       S +M+HF P
Sbjct: 124 ETNPFASGAIRVYLRDVRECQAKARGIPYKK-KKKTTTTNQSKGAEDSTSMMHFVP 178

[Close]

BLAST of Moc04g01170 vs. ExPASy TrEMBL
Match: A0A5D3C6X1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003300 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.3e-75
Identity = 149/191 (78.01%), Postives = 157/191 (82.20%), Query Frame = 0


Query: 1   MSIEGREGGGKDFSEGSSSAQPVGS-----TPSRYESQKRRDWNTFCQYLKNQRPSVPLS 60
           MSIEG     KDFSEGSSS+   GS     TPSRYESQKRRDWNTFCQYLKNQRP VPLS
Sbjct: 1   MSIEG--SISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLS 60

Query: 61  NCSCNHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAA 120
           +C+CN VLEFLRYLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  HCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEENGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNET-------EE 180
           YEENGGS ETNPFASGAIRVYLRDVRECQAKARGIPYKK KKK     N+T       ++
Sbjct: 121 YEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSSTINQTKGGGHDDQD 180

[Close]

BLAST of Moc04g01170 vs. ExPASy TrEMBL
Match: A0A0A0K2D1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.7e-75
Identity = 147/190 (77.37%), Postives = 157/190 (82.63%), Query Frame = 0


Query: 1   MSIEGREGGGKDFSEGSSSAQPVGS-----TPSRYESQKRRDWNTFCQYLKNQRPSVPLS 60
           MSIEG     KDFSEGSSS+   GS     TPSRYESQKRRDWNTFCQYLKNQRP VPLS
Sbjct: 1   MSIEG-SSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLS 60

Query: 61  NCSCNHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAA 120
           +C+CN VLEFLRYLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  HCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEENGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQ------NNETEES 180
           YEENGGS ETNPFASGAIRVYLRDVRECQAKARGIPYKK KKK  +        ++ ++S
Sbjct: 121 YEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDS 180

[Close]

BLAST of Moc04g01170 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 275.4 bits (703), Expect = 3.2e-74
Identity = 135/164 (82.32%), Postives = 140/164 (85.37%), Query Frame = 0


Query: 10  GKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVLEFLRYL 69
           GK   E S S  PV  TPSRYESQKRRDWNTF QYLKNQRP VP+S+CSCNHVL+FLRYL
Sbjct: 8   GKSLMESSGSEPPV--TPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYL 67

Query: 70  DQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFA 129
           DQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG PETNPFA
Sbjct: 68  DQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFA 127

Query: 130 SGAIRVYLRDVRECQAKARGIPYKKNKKKKPV--QNNETEESSS 172
           SGAIRVYLR+VRECQAKARGIPYKK KKKKP        E+SSS
Sbjct: 128 SGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSS 169

[Close]

BLAST of Moc04g01170 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 275.4 bits (703), Expect = 3.2e-74
Identity = 135/164 (82.32%), Postives = 140/164 (85.37%), Query Frame = 0


Query: 10  GKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVLEFLRYL 69
           GK   E S S  PV  TPSRYESQKRRDWNTF QYLKNQRP VP+S+CSCNHVL+FLRYL
Sbjct: 8   GKSLMESSGSEPPV--TPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYL 67

Query: 70  DQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFA 129
           DQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG PETNPFA
Sbjct: 68  DQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFA 127

Query: 130 SGAIRVYLRDVRECQAKARGIPYKKNKKKKPV--QNNETEESSS 172
           SGAIRVYLR+VRECQAKARGIPYKK KKKKP        E+SSS
Sbjct: 128 SGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSS 169

[Close]

BLAST of Moc04g01170 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 229.9 bits (585), Expect = 1.6e-60
Identity = 109/171 (63.74%), Postives = 135/171 (78.95%), Query Frame = 0


Query: 2   SIEGREGGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNH 61
           S+ G  GG  + ++  SS+    +  SRYE+QKRRDWNTF QYL+N RP + LS CS  H
Sbjct: 29  SVTGATGG--EATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAH 88

Query: 62  VLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG 121
           VLEFLRYLDQFGKTKVH + C FYGHP PPAPC CPLRQAWGSLDALIGRLRAA+EENGG
Sbjct: 89  VLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG 148

Query: 122 SPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNETEESSSM 173
            PETNPF + A+R+YLR+VR+ Q+KARG+ Y+K K+K+P+ ++ T  SS++
Sbjct: 149 KPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSSAV 197

[Close]

BLAST of Moc04g01170 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 226.9 bits (577), Expect = 1.3e-59
Identity = 110/180 (61.11%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 10  GKDFSEGSSSAQ-------------PVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSN 69
           GK  +EGSS  Q             P     SRYESQKRRDWNTFCQYL+NQ+P V +S 
Sbjct: 8   GKGIAEGSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQPPVHISQ 67

Query: 70  CSCNHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAY 129
           C  NH+L+FL+YLDQFGKTKVH HGC+F+G  EP   C CPL+QAWGSLDALIGRLRAA+
Sbjct: 68  CGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRLRAAF 127

Query: 130 EENGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKK---PVQNNETEESSSMT 174
           EENGG PE NPFA G IRV+LR+VR+ QAKARG+PYKK KK+K   P+++++ E+ ++ T
Sbjct: 128 EENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKSHDGEDGTTGT 187

[Close]

BLAST of Moc04g01170 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 226.9 bits (577), Expect = 1.3e-59
Identity = 107/147 (72.79%), Postives = 121/147 (82.31%), Query Frame = 0


Query: 14  SEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVLEFLRYLDQFG 73
           S  SSS     +  SRYE+QKRRDWNTF QYL+N RP + LS CS  HVLEFLRYLDQFG
Sbjct: 33  SSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFG 92

Query: 74  KTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAI 133
           KTKVH H C F+GHP PPAPC CPLRQAWGSLDALIGRLRAA+EENGGSPETNPF + A+
Sbjct: 93  KTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAV 152

Query: 134 RVYLRDVRECQAKARGIPYKKNKKKKP 161
           R+YLR+VR+ QAKARGI Y+K K+K+P
Sbjct: 153 RLYLREVRDSQAKARGISYEKKKRKRP 179

The following BLAST results are available for this feature:

BLAST of Moc04g01170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147983.1	2.2e-101	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Momordica charantia]	[more]
KAG6589232.1	5.3e-79	83.52	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
XP_023530720.1	7.0e-79	83.52	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930813.1	3.5e-78	82.95	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata]	[more]
KAG7022931.1	1.3e-77	83.52	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]

BLAST of Moc04g01170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	4.5e-73	82.32	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q7XDD0	6.8e-61	70.59	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]
O82268	2.2e-59	63.74	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XVI8	2.9e-59	68.13	Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1	[more]
Q7XRS1	2.9e-59	68.13	Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2	[more]

BLAST of Moc04g01170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D2T4	1.1e-101	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1EWG4	1.7e-78	82.95	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JNV9	1.9e-77	82.95	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A5D3C6X1	1.3e-75	78.01	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0K2D1	1.7e-75	77.37	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 S...	[more]

BLAST of Moc04g01170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	3.2e-74	82.32	Protein of unknown function (DUF640)	[more]
AT2G42610.2	3.2e-74	82.32	Protein of unknown function (DUF640)	[more]
AT2G31160.1	1.6e-60	63.74	Protein of unknown function (DUF640)	[more]
AT1G78815.1	1.3e-59	61.11	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.3e-59	72.79	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 19..142 e-value: 1.6E-64 score: 215.7
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 29..156 score: 77.098846
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR31165:SF10	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	coord: 10..173
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 10..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g01170.1	Moc04g01170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus