Moc03g21220 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g21220
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr3: 14509067 .. 14509732 (-)
RNA-Seq Expression	Moc03g21220
Synteny	Moc03g21220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCAGTTGACGAACACTGAAGGTGAATCTACCGGCAACGATGAATTGCAATCCAATCTAGTGGTAAATCCGAGCAACAAGATCTCTACCTTGAAGTTAACTGATGATAATTTTCTTTTGTGGAAATTTCAAATTCTCACTGCCCTAGAAGGTCATGGTTTGGAATCACATTTGGAAGATGGTCCGCCTTCTAAATTCCTTCAGGTTAGTGACCAATCTTCTACTGCTCTGAAATTAAATCCGGTTTTTACTAAGTGGAAGCGTCAGGATAAATTGATATCCTCGTGGTTACTTGGTTCTATGATCGAGATATTACTTCAACAATCACTACATTGTACATCGGCTAGGGAGATACGAAATTGTCTTGTACAAATTTTCACATCTAGAAATTTAGCACAAGTGATGAAGATTAAATCAAAATTACAAACTCTACAAAAGGGAAATTCTACACTGAAACACTATTTTTCTCAAGTTAAAAAGTGTATTGATGATGTAGCAGCCGTCAGTAAACCAGTTTCTATGAAGGATCATATTGTTTATCTATTATCTGGTTTAGGATCTGAGTTTGAGTCAATGATTTCTGTTATTCTTGCGAAATCTAGTCCTCAAATAGTACAAGATGTCATGGCTCTATTATTTACACAAGAAAATAGAATATTCTGA

mRNA sequence

ATGGACCAGTTGACGAACACTGAAGGTGAATCTACCGGCAACGATGAATTGCAATCCAATCTAGTGGTAAATCCGAGCAACAAGATCTCTACCTTGAAGTTAACTGATGATAATTTTCTTTTGTGGAAATTTCAAATTCTCACTGCCCTAGAAGGTCATGGTTTGGAATCACATTTGGAAGATGGTCCGCCTTCTAAATTCCTTCAGGTTAGTGACCAATCTTCTACTGCTCTGAAATTAAATCCGGTTTTTACTAAGTGGAAGCGTCAGGATAAATTGATATCCTCGTGGTTACTTGGTTCTATGATCGAGATATTACTTCAACAATCACTACATTGTACATCGGCTAGGGAGATACGAAATTGTCTTGTACAAATTTTCACATCTAGAAATTTAGCACAAGTGATGAAGATTAAATCAAAATTACAAACTCTACAAAAGGGAAATTCTACACTGAAACACTATTTTTCTCAAGTTAAAAAGTGTATTGATGATGTAGCAGCCGTCAGTAAACCAGTTTCTATGAAGGATCATATTGTTTATCTATTATCTGGTTTAGGATCTGAGTTTGAGTCAATGATTTCTGTTATTCTTGCGAAATCTAGTCCTCAAATAGTACAAGATGTCATGGCTCTATTATTTACACAAGAAAATAGAATATTCTGA

Coding sequence (CDS)

ATGGACCAGTTGACGAACACTGAAGGTGAATCTACCGGCAACGATGAATTGCAATCCAATCTAGTGGTAAATCCGAGCAACAAGATCTCTACCTTGAAGTTAACTGATGATAATTTTCTTTTGTGGAAATTTCAAATTCTCACTGCCCTAGAAGGTCATGGTTTGGAATCACATTTGGAAGATGGTCCGCCTTCTAAATTCCTTCAGGTTAGTGACCAATCTTCTACTGCTCTGAAATTAAATCCGGTTTTTACTAAGTGGAAGCGTCAGGATAAATTGATATCCTCGTGGTTACTTGGTTCTATGATCGAGATATTACTTCAACAATCACTACATTGTACATCGGCTAGGGAGATACGAAATTGTCTTGTACAAATTTTCACATCTAGAAATTTAGCACAAGTGATGAAGATTAAATCAAAATTACAAACTCTACAAAAGGGAAATTCTACACTGAAACACTATTTTTCTCAAGTTAAAAAGTGTATTGATGATGTAGCAGCCGTCAGTAAACCAGTTTCTATGAAGGATCATATTGTTTATCTATTATCTGGTTTAGGATCTGAGTTTGAGTCAATGATTTCTGTTATTCTTGCGAAATCTAGTCCTCAAATAGTACAAGATGTCATGGCTCTATTATTTACACAAGAAAATAGAATATTCTGA

Protein sequence

MDQLTNTEGESTGNDELQSNLVVNPSNKISTLKLTDDNFLLWKFQILTALEGHGLESHLEDGPPSKFLQVSDQSSTALKLNPVFTKWKRQDKLISSWLLGSMIEILLQQSLHCTSAREIRNCLVQIFTSRNLAQVMKIKSKLQTLQKGNSTLKHYFSQVKKCIDDVAAVSKPVSMKDHIVYLLSGLGSEFESMISVILAKSSPQIVQDVMALLFTQENRIF

Homology

[Close]

BLAST of Moc03g21220 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 209.9 bits (533), Expect = 2.2e-50
Identity = 112/205 (54.63%), Postives = 150/205 (73.17%), Query Frame = 0


Query: 20  NLVVNPSNKISTLKLTDDNFLLWKFQILTALEGHGLESHL--EDGPPSKFLQVSDQSSTA 79
           N +    NKIS +KL DD FLLWKFQILTALE + LE+ L  E  PPSK+L +S +SS+A
Sbjct: 20  NQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYL-ISTESSSA 79

Query: 80  LKL---NPVFTKWKRQDKLISSWLLGSMIEILLQQSLHCTSAREIRNCLVQIFTSRNLAQ 139
                 NP +  WKRQD+LISSWLLGSM E +L Q LHC SA+EI   L  IF+SR LAQ
Sbjct: 80  SATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIFSSRYLAQ 139

Query: 140 VMKIKSKLQTLQKGNSTLKHYFSQVKKCIDDVAAVSKPVSMKDHIVYLLSGLGSEFESMI 199
            M+ K+KL  ++KG+  LK YF ++ +C+D +A+++KPVS  DHI+Y+L+GLGS+++SMI
Sbjct: 140 AMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMI 199

Query: 200 SVILAKSSPQIVQDVMALLFTQENR 220
           SVI A++    VQ+VM+LL TQE++
Sbjct: 200 SVISARTDSPSVQEVMSLLLTQESQ 223

[Close]

BLAST of Moc03g21220 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 209.9 bits (533), Expect = 2.2e-50
Identity = 112/205 (54.63%), Postives = 150/205 (73.17%), Query Frame = 0


Query: 20  NLVVNPSNKISTLKLTDDNFLLWKFQILTALEGHGLESHL--EDGPPSKFLQVSDQSSTA 79
           N +    NKIS +KL DD FLLWKFQILTALE + LE+ L  E  PPSK+L +S +SS+A
Sbjct: 20  NQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYL-ISTESSSA 79

Query: 80  LKL---NPVFTKWKRQDKLISSWLLGSMIEILLQQSLHCTSAREIRNCLVQIFTSRNLAQ 139
                 NP +  WKRQD+LISSWLLGSM E +L Q LHC SA+EI   L  IF+SR LAQ
Sbjct: 80  SATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIFSSRYLAQ 139

Query: 140 VMKIKSKLQTLQKGNSTLKHYFSQVKKCIDDVAAVSKPVSMKDHIVYLLSGLGSEFESMI 199
            M+ K+KL  ++KG+  LK YF ++ +C+D +A+++KPVS  DHI+Y+L+GLGS+++SMI
Sbjct: 140 AMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMI 199

Query: 200 SVILAKSSPQIVQDVMALLFTQENR 220
           SVI A++    VQ+VM+LL TQE++
Sbjct: 200 SVISARTDSPSVQEVMSLLLTQESQ 223

[Close]

BLAST of Moc03g21220 vs. NCBI nr
Match: KAA0053143.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-47
Identity = 103/202 (50.99%), Postives = 146/202 (72.28%), Query Frame = 0


Query: 22  VVNPSNKISTLKLTDDNFLLWKFQILTALEGHGLESHLED--GPPSKFLQVSDQSSTALK 81
           +    NKIS +KL+DDNFLLWKFQILTALE + LE+  E    PPSK+L  +  SST+  
Sbjct: 17  IFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFFESELEPPSKYLTSTGSSSTSAT 76

Query: 82  L--NPVFTKWKRQDKLISSWLLGSMIEILLQQSLHCTSAREIRNCLVQIFTSRNLAQVMK 141
              NP +  WKR ++LIS WLLGSM E +L Q +HC SA+EI   L  IF+SR LAQ M+
Sbjct: 77  RTPNPEYKVWKRHNRLISPWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQ 136

Query: 142 IKSKLQTLQKGNSTLKHYFSQVKKCIDDVAAVSKPVSMKDHIVYLLSGLGSEFESMISVI 201
            K+KL  ++KG+ +LK YF ++++C+D +A+++KPVS  DHI+Y+L GLG +++SMIS+I
Sbjct: 137 FKNKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGYDYQSMISII 196

Query: 202 LAKSSPQIVQDVMALLFTQENR 220
            A++    +Q+VM+LL TQE++
Sbjct: 197 SARTDSPSIQEVMSLLLTQESQ 218

[Close]

BLAST of Moc03g21220 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-47
Identity = 101/207 (48.79%), Postives = 153/207 (73.91%), Query Frame = 0


Query: 17  LQSNLVVNPSNKISTLKLTDDNFLLWKFQILTALEGHGLESHLE--DGPPSKFLQVS--D 76
           +Q++  +NP +K+S ++L DDN LLWKFQI TAL+G+GLES+++  +  P++F+Q +  +
Sbjct: 16  IQASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDTPAQFVQTTEDE 75

Query: 77  QSSTALKLNPVFTKWKRQDKLISSWLLGSMIEILLQQSLHCTSAREIRNCLVQIFTSRNL 136
            SS++L+ NP + +W +QDKLIS+WLLGSM E +L Q L C SAREI   L  +F SR L
Sbjct: 76  SSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIWTVLECMFASRTL 135

Query: 137 AQVMKIKSKLQTLQKGNSTLKHYFSQVKKCIDDVAAVSKPVSMKDHIVYLLSGLGSEFES 196
           A+VM++K KL+  +KGN +LK YF ++K  +D +A   K +S +DHI+++L+GLG EF++
Sbjct: 136 ARVMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIAGKKLSTEDHIMHILAGLGPEFDA 195

Query: 197 MISVILAKSSPQIVQDVMALLFTQENR 220
           +ISVI A++ PQ +Q+V +LL  QE R
Sbjct: 196 IISVITARNMPQTLQEVCSLLLQQEGR 222

[Close]

BLAST of Moc03g21220 vs. NCBI nr
Match: KAA0067213.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-44
Identity = 103/191 (53.93%), Postives = 137/191 (71.73%), Query Frame = 0


Query: 20  NLVVNPSNKISTLKLTDDNFLLWKFQILTALEGHGLESHL--EDGPPSKFLQVSDQSSTA 79
           N +   SNKIS +KL+DDNFLLWKFQILTALE + LE+ L  E  PPSK+L  +  SS +
Sbjct: 20  NQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSKYLISTGSSSAS 79

Query: 80  LKL--NPVFTKWKRQDKLISSWLLGSMIEILLQQSLHCTSAREIRNCLVQIFTSRNLAQV 139
                NP +  WKRQD+LISSWLLGSM E +L Q LHC SA+EI   L  IF+SR LAQ 
Sbjct: 80  ATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQA 139

Query: 140 MKIKSKLQTLQKGNSTLKHYFSQVKKCIDDVAAVSKPVSMKDHIVYLLSGLGSEFESMIS 199
           MK K+KL  ++K +  LK YF +++  +D +A+++KPVS  DHI+Y+L+GLGS+++SMIS
Sbjct: 140 MKFKNKLHNIKKESMPLKEYFLKIQHRVDALASINKPVSSDDHILYILAGLGSDYQSMIS 199

Query: 200 VILAKS-SPQI 206
           VI  ++ SP +
Sbjct: 200 VIFPRTESPSV 210

[Close]

BLAST of Moc03g21220 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.7e-17
Identity = 59/205 (28.78%), Postives = 104/205 (50.73%), Query Frame = 0


Query: 19  SNLVVNPSNKISTLKLTDDNFLLWKFQILTALEGHGLESHLEDG---PPSKFLQVSDQSS 78
           S L VN SN     KLT  N+L+W  Q+    +G+ L   L+     PP+        + 
Sbjct: 14  SILNVNMSN---VTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATI-----GTD 73

Query: 79  TALKLNPVFTKWKRQDKLISSWLLGSMIEILLQQSLHCTSAREIRNCLVQIFTSRNLAQV 138
            A ++NP +T+WKRQDKLI S +LG++   +       T+A +I   L +I+ + +   V
Sbjct: 74  AAPRVNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHV 133

Query: 139 MKIKSKLQTLQKGNSTLKHYFSQVKKCIDDVAAVSKPVSMKDHIVYLLSGLGSEFESMIS 198
            +++++L+   KG  T+  Y   +    D +A + KP+   + +  +L  L  E++ +I 
Sbjct: 134 TQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVID 193

Query: 199 VILAKSSPQIVQDVMALLFTQENRI 221
            I AK +P  + ++   L   E++I
Sbjct: 194 QIAAKDTPPTLTEIHERLLNHESKI 210

[Close]

BLAST of Moc03g21220 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-10
Identity = 48/200 (24.00%), Postives = 93/200 (46.50%), Query Frame = 0


Query: 21  LVVNPSNKISTLKLTDDNFLLWKFQILTALEGHGLESHLEDGPPSKFLQVSDQSSTALKL 80
           L VN SN     KLT  N+L+W  Q+    +G+ L   L+   P     +   +    ++
Sbjct: 16  LNVNMSN---VTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIG--TDAVPRV 75

Query: 81  NPVFTKWKRQDKLISSWLLGSMIEILLQQSLHCTSAREIRNCLVQIFTSRNLAQVMKIKS 140
           NP +T+W+RQDKLI S +LG++   +       T+A +I   L +I+ + +   V +++ 
Sbjct: 76  NPDYTRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRF 135

Query: 141 KLQTLQKGNSTLKHYFSQVKKCIDDVAAVSKPVSMKDHIVYLLSGLGSEFESMISVILAK 200
             +                    D +A + KP+   + +  +L  L  +++ +I  I AK
Sbjct: 136 ITR-------------------FDQLALLGKPMDHDEQVERVLENLPDDYKPVIDQIAAK 191

Query: 201 SSPQIVQDVMALLFTQENRI 221
            +P  + ++   L  +E+++
Sbjct: 196 DTPPSLTEIHERLINRESKL 191

[Close]

BLAST of Moc03g21220 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 112/205 (54.63%), Postives = 150/205 (73.17%), Query Frame = 0


Query: 20  NLVVNPSNKISTLKLTDDNFLLWKFQILTALEGHGLESHL--EDGPPSKFLQVSDQSSTA 79
           N +    NKIS +KL DD FLLWKFQILTALE + LE+ L  E  PPSK+L +S +SS+A
Sbjct: 20  NQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYL-ISTESSSA 79

Query: 80  LKL---NPVFTKWKRQDKLISSWLLGSMIEILLQQSLHCTSAREIRNCLVQIFTSRNLAQ 139
                 NP +  WKRQD+LISSWLLGSM E +L Q LHC SA+EI   L  IF+SR LAQ
Sbjct: 80  SATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIFSSRYLAQ 139

Query: 140 VMKIKSKLQTLQKGNSTLKHYFSQVKKCIDDVAAVSKPVSMKDHIVYLLSGLGSEFESMI 199
            M+ K+KL  ++KG+  LK YF ++ +C+D +A+++KPVS  DHI+Y+L+GLGS+++SMI
Sbjct: 140 AMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMI 199

Query: 200 SVILAKSSPQIVQDVMALLFTQENR 220
           SVI A++    VQ+VM+LL TQE++
Sbjct: 200 SVISARTDSPSVQEVMSLLLTQESQ 223

[Close]

BLAST of Moc03g21220 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 112/205 (54.63%), Postives = 150/205 (73.17%), Query Frame = 0


Query: 20  NLVVNPSNKISTLKLTDDNFLLWKFQILTALEGHGLESHL--EDGPPSKFLQVSDQSSTA 79
           N +    NKIS +KL DD FLLWKFQILTALE + LE+ L  E  PPSK+L +S +SS+A
Sbjct: 20  NQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYL-ISTESSSA 79

Query: 80  LKL---NPVFTKWKRQDKLISSWLLGSMIEILLQQSLHCTSAREIRNCLVQIFTSRNLAQ 139
                 NP +  WKRQD+LISSWLLGSM E +L Q LHC SA+EI   L  IF+SR LAQ
Sbjct: 80  SATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIFSSRYLAQ 139

Query: 140 VMKIKSKLQTLQKGNSTLKHYFSQVKKCIDDVAAVSKPVSMKDHIVYLLSGLGSEFESMI 199
            M+ K+KL  ++KG+  LK YF ++ +C+D +A+++KPVS  DHI+Y+L+GLGS+++SMI
Sbjct: 140 AMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMI 199

Query: 200 SVILAKSSPQIVQDVMALLFTQENR 220
           SVI A++    VQ+VM+LL TQE++
Sbjct: 200 SVISARTDSPSVQEVMSLLLTQESQ 223

[Close]

BLAST of Moc03g21220 vs. ExPASy TrEMBL
Match: A0A5A7UB21 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1486G00150 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 5.0e-48
Identity = 103/202 (50.99%), Postives = 146/202 (72.28%), Query Frame = 0


Query: 22  VVNPSNKISTLKLTDDNFLLWKFQILTALEGHGLESHLED--GPPSKFLQVSDQSSTALK 81
           +    NKIS +KL+DDNFLLWKFQILTALE + LE+  E    PPSK+L  +  SST+  
Sbjct: 17  IFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFFESELEPPSKYLTSTGSSSTSAT 76

Query: 82  L--NPVFTKWKRQDKLISSWLLGSMIEILLQQSLHCTSAREIRNCLVQIFTSRNLAQVMK 141
              NP +  WKR ++LIS WLLGSM E +L Q +HC SA+EI   L  IF+SR LAQ M+
Sbjct: 77  RTPNPEYKVWKRHNRLISPWLLGSMSEEILNQMVHCKSAKEIWGTLQGIFSSRYLAQAMQ 136

Query: 142 IKSKLQTLQKGNSTLKHYFSQVKKCIDDVAAVSKPVSMKDHIVYLLSGLGSEFESMISVI 201
            K+KL  ++KG+ +LK YF ++++C+D +A+++KPVS  DHI+Y+L GLG +++SMIS+I
Sbjct: 137 FKNKLHNIKKGSMSLKEYFLKIQQCVDALASINKPVSSDDHILYILVGLGYDYQSMISII 196

Query: 202 LAKSSPQIVQDVMALLFTQENR 220
            A++    +Q+VM+LL TQE++
Sbjct: 197 SARTDSPSIQEVMSLLLTQESQ 218

[Close]

BLAST of Moc03g21220 vs. ExPASy TrEMBL
Match: A0A6J1DLT9 (uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021757 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 5.0e-48
Identity = 101/207 (48.79%), Postives = 153/207 (73.91%), Query Frame = 0


Query: 17  LQSNLVVNPSNKISTLKLTDDNFLLWKFQILTALEGHGLESHLE--DGPPSKFLQVS--D 76
           +Q++  +NP +K+S ++L DDN LLWKFQI TAL+G+GLES+++  +  P++F+Q +  +
Sbjct: 16  IQASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDTPAQFVQTTEDE 75

Query: 77  QSSTALKLNPVFTKWKRQDKLISSWLLGSMIEILLQQSLHCTSAREIRNCLVQIFTSRNL 136
            SS++L+ NP + +W +QDKLIS+WLLGSM E +L Q L C SAREI   L  +F SR L
Sbjct: 76  SSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIWTVLECMFASRTL 135

Query: 137 AQVMKIKSKLQTLQKGNSTLKHYFSQVKKCIDDVAAVSKPVSMKDHIVYLLSGLGSEFES 196
           A+VM++K KL+  +KGN +LK YF ++K  +D +A   K +S +DHI+++L+GLG EF++
Sbjct: 136 ARVMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIAGKKLSTEDHIMHILAGLGPEFDA 195

Query: 197 MISVILAKSSPQIVQDVMALLFTQENR 220
           +ISVI A++ PQ +Q+V +LL  QE R
Sbjct: 196 IISVITARNMPQTLQEVCSLLLQQEGR 222

[Close]

BLAST of Moc03g21220 vs. ExPASy TrEMBL
Match: A0A5A7VGJ8 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00160 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 6.7e-45
Identity = 103/191 (53.93%), Postives = 137/191 (71.73%), Query Frame = 0


Query: 20  NLVVNPSNKISTLKLTDDNFLLWKFQILTALEGHGLESHL--EDGPPSKFLQVSDQSSTA 79
           N +   SNKIS +KL+DDNFLLWKFQILTALE + LE+ L  E  PPSK+L  +  SS +
Sbjct: 20  NQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESEPPSKYLISTGSSSAS 79

Query: 80  LKL--NPVFTKWKRQDKLISSWLLGSMIEILLQQSLHCTSAREIRNCLVQIFTSRNLAQV 139
                NP +  WKRQD+LISSWLLGSM E +L Q LHC SA+EI   L  IF+SR LAQ 
Sbjct: 80  ATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQA 139

Query: 140 MKIKSKLQTLQKGNSTLKHYFSQVKKCIDDVAAVSKPVSMKDHIVYLLSGLGSEFESMIS 199
           MK K+KL  ++K +  LK YF +++  +D +A+++KPVS  DHI+Y+L+GLGS+++SMIS
Sbjct: 140 MKFKNKLHNIKKESMPLKEYFLKIQHRVDALASINKPVSSDDHILYILAGLGSDYQSMIS 199

Query: 200 VILAKS-SPQI 206
           VI  ++ SP +
Sbjct: 200 VIFPRTESPSV 210

[Close]

BLAST of Moc03g21220 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-09
Identity = 46/192 (23.96%), Postives = 94/192 (48.96%), Query Frame = 0


Query: 31  TLKLTDDNFLLWKFQILTALEGHGLESHLEDGPPSKFLQVSDQSSTALKLNPVFTKWKRQ 90
           TL L   N+ +W+    T     G+  H+            D SST   +     +WK +
Sbjct: 25  TLDLNKLNYDVWRELFETLCLSFGVLGHI------------DGSSTPTPMTE--KRWKER 84

Query: 91  DKLISSWLLGSMIEILLQQ--SLHCTSAREIRNCLVQIFTSRNLAQVMKIKSKLQTLQKG 150
           D L+  W+ G++ + LL     + CT AR++   L  +F     A+ ++ +++L+T    
Sbjct: 85  DGLVKMWIYGTITDSLLDTIIKVGCT-ARDLWLSLENLFRDNKEARALQFENELRTTTID 144

Query: 151 NSTLKHYFSQVKKCIDDVAAVSKPVSMKDHIVYLLSGLGSEFESMISVILAKSSPQIVQD 210
           + ++  Y  ++K   D +  V  P+S +  +++LL+GL  +++ +++VI  KS      +
Sbjct: 145 DLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTE 201

Query: 211 VMALLFTQENRI 221
             ++L  +E+R+
Sbjct: 205 ARSMLLMEESRL 201

[Close]

BLAST of Moc03g21220 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 5.9e-09
Identity = 43/190 (22.63%), Postives = 91/190 (47.89%), Query Frame = 0


Query: 32  LKLTDDNFLLWKFQILTALEGHGLESHLEDGPPSKFLQVSDQSSTALKLNPVFTKWKRQD 91
           L + + N+  W+   LT      +  H++               T L  N     W+++D
Sbjct: 24  LDIEESNYDAWRELFLTHCLSFDVMGHID--------------GTLLPTNANDVNWQKRD 83

Query: 92  KLISSWLLGSMIEILLQQSLHCTS-AREIRNCLVQIFTSRNLAQVMKIKSKLQTLQKGNS 151
            ++   L G++     Q S   +S +R+I   +   F +   A+ +++ S+L+T   G+ 
Sbjct: 84  GIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDM 143

Query: 152 TLKHYFSQVKKCIDDVAAVSKPVSMKDHIVYLLSGLGSEFESMISVILAKSSPQIVQDVM 211
            +  Y+ ++KK  D +  V  PV+ ++ ++Y+L+GL  +F+++I+VI  +       D  
Sbjct: 144 RVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAA 199

Query: 212 ALLFTQENRI 221
            +L  +E+R+
Sbjct: 204 TMLQEEEDRL 199

The following BLAST results are available for this feature:

BLAST of Moc03g21220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048297.1	2.2e-50	54.63	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK10642.1	2.2e-50	54.63	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0053143.1	1.0e-47	50.99	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]
XP_022154487.1	1.0e-47	48.79	uncharacterized protein LOC111021757 [Momordica charantia]	[more]
KAA0067213.1	1.4e-44	53.93	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]

BLAST of Moc03g21220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	5.7e-17	28.78	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.3e-10	24.00	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Moc03g21220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U233	1.1e-50	54.63	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CH97	1.1e-50	54.63	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UB21	5.0e-48	50.99	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1DLT9	5.0e-48	48.79	uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5A7VGJ8	6.7e-45	53.93	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Moc03g21220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48050.1	2.0e-09	23.96	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]
AT1G34070.1	5.9e-09	22.63	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 87..219 e-value: 3.1E-13 score: 49.7
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 28..220
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 28..220

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g21220.1	Moc03g21220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0071704	organic substance metabolic process
molecular_function	GO:0005488	binding