Moc03g03490 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g03490
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Cyclin-dependent kinase inhibitor
Location	chr3: 2606102 .. 2607393 (-)
RNA-Seq Expression	Moc03g03490
Synteny	Moc03g03490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAATCCGATCGGGACTGCGGAGCGGGACGGCTGCCGTACGCCGGAGCGGCCGGAATTTCGGATTGCATCGGCGACGGCACCGCCGCCACCGCCGAAGAAGAAGCCGGTTTCAGCGACGAAGGAGCGCGAGGCTCCGGAGGGGGGATATTTCGAACCGCCTGACGATTTGGAGCGATTCTTCTCTCCGGTTCCGAGCTTGGCGGTCGGAGGTCGCCGGAGCGCCACCTGAATCGGCATTCCGGCGGTGGCTGAAGACGAAAATCGCCGCCGTAAATGGAGCTTATCAATCTTCAATCTCGTTGATCTCGTCTCTAGTATTTTGTGTGTATATATAAATATATATATTTTTAACTGTTTTTGGATTTGGTTACGAGTATCATATAAATTATAAATCATAAATATAAAAAGTTTTAGAGCTTGAATTATTTACTTATGAAGTCTTTGAATTTTAACCTACGGTTGTGTTAAACTTTTTTTTTTTTAACTTTGAGAGATGTGTTATTTGTCAATTTGTTGGATTATATTTGATTTTTTGTTTTCGAAATTGATGCCGCATGGCTTACTCGTTCCTGTCATTGGAGGCCGATCGTTATTGGATATTGTTCGAAACGATCAGCATAAGAATCAATGGCATACTAGTCCCTGTAATTGGAGATTAATTGTTATTGGAGATTGTTCGAAAGCATAAGAATCAATTTAAGATTCGAACATAGCATCAATTTATTTAAGATTCGAACATAAGAGTTCAAAGTAGATGATACAAGATCATAAATATTTTTTGTTTTGACAAGTTATATATTCTTTTTAAGAAACATTATGTTTGGGGAGGAGAATACCCTGGACACGTGAAGGGCCCCTATTGGTGCTCCAAGATGACTCATAGGTCATGCCCAGCTCGGCCTGCCGAGATCACCACCACTAGCGTTGACAAATGCAAAGTATGAGGGCCGAGGTGAACCTGGCCGAGGTCCGATCTACCGGGAAGCTCGGTGGGGGCTGAGGTGAGCTACTGTCAGTGCGTGATTATCGGGAGTAACCGTCGGTCCCGAGATTACCGGGTGTAACCGTCGCGAGATTAGCGGGACTACCACCCATAAGTAGAGGACCTCACTCCACGATCAGGTACGATGATTTCTGACCTCGAATTAAACTGGGAATCCGACCTATACTAACTTGATCGTCGGAGTGCTCACCTTTTTGTGCAGGTCCGCCCAAGTATTCAGATCGGTCCGGAGGCCGAGTTTGAGCTGCAATCTGAAATACACTGTTGTGCATATCCTTGCATAA

mRNA sequence

ATGGCGAATCCGATCGGGACTGCGGAGCGGGACGGCTGCCGTACGCCGGAGCGGCCGGAATTTCGGATTGCATCGGCGACGGCACCGCCGCCACCGCCGAAGAAGAAGCCGGTTTCAGCGACGAAGGAGCGCGAGGCTCCGGAGGGGGGATATTTCGAACCGCCTGACGATTTGGAGCGATTCTTCTCTCCGGTTCCGAGCTTGGCGGTCGGAGGTCATGCCCAGCTCGGCCTGCCGAGATCACCACCACTAGCGTTGACAAATGCAAAGTATGAGGGCCGAGGTGAACCTGGCCGAGGTCCGATCTACCGGGAAGCTCGGTGGGGGCTGAGGTCCGCCCAAGTATTCAGATCGGTCCGGAGGCCGAGTTTGAGCTGCAATCTGAAATACACTGTTGTGCATATCCTTGCATAA

Coding sequence (CDS)

ATGGCGAATCCGATCGGGACTGCGGAGCGGGACGGCTGCCGTACGCCGGAGCGGCCGGAATTTCGGATTGCATCGGCGACGGCACCGCCGCCACCGCCGAAGAAGAAGCCGGTTTCAGCGACGAAGGAGCGCGAGGCTCCGGAGGGGGGATATTTCGAACCGCCTGACGATTTGGAGCGATTCTTCTCTCCGGTTCCGAGCTTGGCGGTCGGAGGTCATGCCCAGCTCGGCCTGCCGAGATCACCACCACTAGCGTTGACAAATGCAAAGTATGAGGGCCGAGGTGAACCTGGCCGAGGTCCGATCTACCGGGAAGCTCGGTGGGGGCTGAGGTCCGCCCAAGTATTCAGATCGGTCCGGAGGCCGAGTTTGAGCTGCAATCTGAAATACACTGTTGTGCATATCCTTGCATAA

Protein sequence

MANPIGTAERDGCRTPERPEFRIASATAPPPPPKKKPVSATKEREAPEGGYFEPPDDLERFFSPVPSLAVGGHAQLGLPRSPPLALTNAKYEGRGEPGRGPIYREARWGLRSAQVFRSVRRPSLSCNLKYTVVHILA

Homology

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BLAST of Moc03g03490 vs. NCBI nr
Match: KAG7036940.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.6 bits (192), Expect = 4.8e-11
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 11 DGCRTPERPEFRIASATAPPPPPKKKPVSATKEREAPEGGYFEPPDDLERFFSPVPSLAV 70
          +G RTPER EFRI  A  PPPPP+KK V+A K+REAP  GYF+ PDDLE +F  VP +A 
Sbjct: 2  EGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVAG 61

Query: 71 GG 73
          GG
Sbjct: 62 GG 63

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BLAST of Moc03g03490 vs. NCBI nr
Match: KAG6607256.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-10
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 11 DGCRTPERPEFRIASATAPPPPPKKKPVSATKEREAPEGGYFEPPDDLERFFSPVPSLAV 70
          +G RTPER EFRI  A  PPPPP+KK V+A K+REAP  GYF+ PDDLE +F  VP +  
Sbjct: 2  EGYRTPERQEFRIQPAKVPPPPPRKKAVAAAKKREAPANGYFQLPDDLEVYFLVVPRVDA 61

Query: 71 GG 73
          GG
Sbjct: 62 GG 63

[Close]

BLAST of Moc03g03490 vs. NCBI nr
Match: KAF8022732.1 (hypothetical protein BT93_F0293 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-09
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 9  ERDGCRTPERPEFRIASATAPPPPPKKKPVSATKEREAPEGGYFEPPDDLERFFS 64
          ERDGC TP R EFRI +A+APPPPP+KKP+   K+R  P+ GYF+ PDDLE  F+
Sbjct: 18 ERDGCSTPTRGEFRIPAASAPPPPPRKKPLCGGKKRGPPKNGYFQAPDDLELLFA 72

[Close]

BLAST of Moc03g03490 vs. NCBI nr
Match: XP_018720939.1 (cyclin-dependent protein kinase inhibitor SMR4 [Eucalyptus grandis] >KCW85522.1 hypothetical protein EUGRSUZ_B02319 [Eucalyptus grandis])

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-08
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 9  ERDGCRTPERPEFRIASATAPPPPPKKKPVSATKEREAPEGGYFEPPDDLERFFS 64
          ERDGC TP R EFRI +A+APPPPP+KK   + K+R  P+ GYF+ PDDLE  F+
Sbjct: 18 ERDGCATPTRGEFRIPAASAPPPPPRKKQSCSGKKRGPPKDGYFQAPDDLELLFA 72

[Close]

BLAST of Moc03g03490 vs. NCBI nr
Match: XP_010106519.1 (cyclin-dependent protein kinase inhibitor SMR4 [Morus notabilis] >EXC10695.1 hypothetical protein L484_025279 [Morus notabilis])

HSP 1 Score: 67.8 bits (164), Expect = 8.4e-08
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 8  AERDGCRTPERPEFRIASATAPPPPPKKKPVSATKEREAPEGGYFEPPDDLERFFSPVP 67
          A  DGC TP+R E RI   +APPPPP+KKP  A K+R+ P+ GYF PP DLE FF+  P
Sbjct: 14 AVEDGCATPKRDECRIREMSAPPPPPRKKPFVAGKKRDRPKNGYFHPP-DLEAFFAMAP 71

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BLAST of Moc03g03490 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-04
Identity = 25/56 (44.64%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 11 DGCRTPERPEFRIASATAPPPPPKKKPVSATKEREAPEGGYFEPPDDLERFFSPVP 67
          +GC TP    +RI  A+  PPPP+KK +   ++R+ P  GYF+PP DLE  F   P
Sbjct: 13 EGCTTPRSTMYRIPVASVCPPPPRKK-LMVVRKRDPPRNGYFQPP-DLETLFYAQP 66

[Close]

BLAST of Moc03g03490 vs. ExPASy TrEMBL
Match: A0A059D4M4 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02319 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 9  ERDGCRTPERPEFRIASATAPPPPPKKKPVSATKEREAPEGGYFEPPDDLERFFS 64
          ERDGC TP R EFRI +A+APPPPP+KK   + K+R  P+ GYF+ PDDLE  F+
Sbjct: 18 ERDGCATPTRGEFRIPAASAPPPPPRKKQSCSGKKRGPPKDGYFQAPDDLELLFA 72

[Close]

BLAST of Moc03g03490 vs. ExPASy TrEMBL
Match: W9RUH3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025279 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.1e-08
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 8  AERDGCRTPERPEFRIASATAPPPPPKKKPVSATKEREAPEGGYFEPPDDLERFFSPVP 67
          A  DGC TP+R E RI   +APPPPP+KKP  A K+R+ P+ GYF PP DLE FF+  P
Sbjct: 14 AVEDGCATPKRDECRIREMSAPPPPPRKKPFVAGKKRDRPKNGYFHPP-DLEAFFAMAP 71

[Close]

BLAST of Moc03g03490 vs. ExPASy TrEMBL
Match: A0A7I8K045 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_01001718 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.9e-07
Identity = 35/61 (57.38%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 6  GTAERDGCRTPERPEFRIASATAPPPPPKKKPVSATKEREAPEGGYFEPPDDLERFFSPV 65
          G AE +G  TP+R E RI    A PPPP+KKPV  TK RE P+ GYF+PP DLE  F  V
Sbjct: 6  GVAEEEGWETPKRVECRIPVVFACPPPPRKKPVVFTKRREPPKNGYFQPP-DLEALFKLV 65

Query: 66 P 67
          P
Sbjct: 66 P 65

[Close]

BLAST of Moc03g03490 vs. ExPASy TrEMBL
Match: A0A6A5NMJ2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00045540 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 12 GCRTPERPEFRIASATAPPPPPKKKPVSATKEREAPEGGYFEPPDDLERFFSPVPS 68
          GC TP+R E RI +A  PPPPPKKKP S  K+R  P+ GYF+PPD  + FF   P+
Sbjct: 15 GCSTPKRWECRIPTALVPPPPPKKKPFSFGKKRAPPKNGYFQPPDLEDLFFLMSPT 70

[Close]

BLAST of Moc03g03490 vs. ExPASy TrEMBL
Match: A0A6A4PGK5 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr14g0375161 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 12 GCRTPERPEFRIASATAPPPPPKKKPVSATKEREAPEGGYFEPPDDLERFFSPVPS 68
          GC TP+R E RI +A  PPPPPKKKP S  K+R  P+ GYF+PPD  + FF   P+
Sbjct: 28 GCSTPKRWECRIPTALVPPPPPKKKPFSFGKKRAPPKNGYFQPPDLEDLFFLMSPT 83

[Close]

BLAST of Moc03g03490 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-05
Identity = 25/56 (44.64%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 11 DGCRTPERPEFRIASATAPPPPPKKKPVSATKEREAPEGGYFEPPDDLERFFSPVP 67
          +GC TP    +RI  A+  PPPP+KK +   ++R+ P  GYF+PP DLE  F   P
Sbjct: 13 EGCTTPRSTMYRIPVASVCPPPPRKK-LMVVRKRDPPRNGYFQPP-DLETLFYAQP 66

The following BLAST results are available for this feature:

BLAST of Moc03g03490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036940.1	4.8e-11	62.90	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]
KAG6607256.1	1.1e-10	61.29	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]
KAF8022732.1	1.2e-09	61.82	hypothetical protein BT93_F0293 [Corymbia citriodora subsp. variegata]	[more]
XP_018720939.1	2.2e-08	60.00	cyclin-dependent protein kinase inhibitor SMR4 [Eucalyptus grandis] >KCW85522.1 ...	[more]
XP_010106519.1	8.4e-08	57.63	cyclin-dependent protein kinase inhibitor SMR4 [Morus notabilis] >EXC10695.1 hyp...	[more]

BLAST of Moc03g03490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1JPP8	2.0e-04	44.64	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Moc03g03490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A059D4M4	1.1e-08	60.00	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02319 PE=4 SV...	[more]
W9RUH3	4.1e-08	57.63	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025279 PE=4 SV=1	[more]
A0A7I8K045	5.9e-07	57.38	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_01001718 PE=4 SV...	[more]
A0A6A5NMJ2	2.2e-06	55.36	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00045540 PE=4 SV=1	[more]
A0A6A4PGK5	2.2e-06	55.36	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr14g0375161 PE=4 SV=1	[more]

BLAST of Moc03g03490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	1.4e-05	44.64	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	PANTHER	PTHR33142:SF56	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR5	coord: 8..66
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 8..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g03490.1	Moc03g03490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus