Moc03g03470 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc03g03470
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr3: 2602693 .. 2603152 (+)
RNA-Seq ExpressionMoc03g03470
SyntenyMoc03g03470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCCTCTTTTAGCAGCGACTTAGGATCCGATGAGGATTTAGCTCGTAGGTTAGAGTCCGAGCTCGAGGAGATAGAAAACTTTAGGTTCTCCGATGACGAGGAGGATAGTGATGCCTCCACCTCGGGTCAGGGTTTGGAATACCCTTCTAGGATACCTGAGCACTACCTCGGATCCCTTCGTAGGGGGTCCGCTATCCCTGAGAACATCCTCCTTAGGATTCCGGAGGAGGGGGAGAGAGCTGACAATCCTCCAGAGGGATGGGTCACTCTCTACTTCAAAATGTTTGAGTACGGCCTCAGGCTTCCCCTTCACCCTTTTGTCCAAGAATTTCTCTTCCGAACTGGGTTGGCTCCAGCTCAAGTGGCCCCCAATGGGTGGGGTGTCATTTTCGCTTTGGCCATCCTTTTCTGGCTACGAGCTCGGGATAGTGAAGAGGCCGAGCTGTTGGACGTAG

mRNA sequence

ATGTCGTCCTCTTTTAGCAGCGACTTAGGATCCGATGAGGATTTAGCTCGTAGGTTAGAGTCCGAGCTCGAGGAGATAGAAAACTTTAGGTTCTCCGATGACGAGGAGGATAGTGATGCCTCCACCTCGGGTCAGGGTTTGGAATACCCTTCTAGGATACCTGAGCACTACCTCGGATCCCTTCGTAGGGGGTCCGCTATCCCTGAGAACATCCTCCTTAGGATTCCGGAGGAGGGGGAGAGAGCTGACAATCCTCCAGAGGGATGGCTCAAGTGGCCCCCAATGGGTGGGGTGTCATTTTCGCTTTGGCCATCCTTTTCTGGCTACGAGCTCGGGATAGTGAAGAGGCCGAGCTGTTGGACGTAG

Coding sequence (CDS)

ATGTCGTCCTCTTTTAGCAGCGACTTAGGATCCGATGAGGATTTAGCTCGTAGGTTAGAGTCCGAGCTCGAGGAGATAGAAAACTTTAGGTTCTCCGATGACGAGGAGGATAGTGATGCCTCCACCTCGGGTCAGGGTTTGGAATACCCTTCTAGGATACCTGAGCACTACCTCGGATCCCTTCGTAGGGGGTCCGCTATCCCTGAGAACATCCTCCTTAGGATTCCGGAGGAGGGGGAGAGAGCTGACAATCCTCCAGAGGGATGGCTCAAGTGGCCCCCAATGGGTGGGGTGTCATTTTCGCTTTGGCCATCCTTTTCTGGCTACGAGCTCGGGATAGTGAAGAGGCCGAGCTGTTGGACGTAG

Protein sequence

MSSSFSSDLGSDEDLARRLESELEEIENFRFSDDEEDSDASTSGQGLEYPSRIPEHYLGSLRRGSAIPENILLRIPEEGERADNPPEGWLKWPPMGGVSFSLWPSFSGYELGIVKRPSCWT
Homology
[Close]
BLAST of Moc03g03470 vs. NCBI nr
Match: XP_022159063.1 (uncharacterized protein LOC111025502, partial [Momordica charantia])

HSP 1 Score: 147.9 bits (372), Expect = 5.6e-32
Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 0 

Query: 1  MSSSFSSDLGSDEDLARRLESELEEIENFRFSDDEEDSDASTSGQGLEYPSRIPEHYLGS 60
          MSSS SS+L  + DLARRLES+LEEIEN R SDD EDSDASTSGQGLEYPSRIPEHYLGS
Sbjct: 1  MSSSISSNL--ESDLARRLESKLEEIENXRISDDGEDSDASTSGQGLEYPSRIPEHYLGS 60

Query: 61 LRRGSAIPENILLRIPEEGERADNPPEGWL 91
          LRRG AIPENILLR+PEEGERADNPPEGW+
Sbjct: 61 LRRGFAIPENILLRLPEEGERADNPPEGWV 88

[Close]
BLAST of Moc03g03470 vs. NCBI nr
Match: XP_022151345.1 (uncharacterized protein LOC111019307 [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-04
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 95  MGGVSFSLWPSFSGYELGIVKRPSCW 121
           MGGVSFSLWPSF GYEL IVKRPSCW
Sbjct: 1   MGGVSFSLWPSFFGYELEIVKRPSCW 26

[Close]
BLAST of Moc03g03470 vs. ExPASy TrEMBL
Match: A0A6J1DXS5 (uncharacterized protein LOC111025502 OS=Momordica charantia OX=3673 GN=LOC111025502 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.7e-32
Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 0 

Query: 1  MSSSFSSDLGSDEDLARRLESELEEIENFRFSDDEEDSDASTSGQGLEYPSRIPEHYLGS 60
          MSSS SS+L  + DLARRLES+LEEIEN R SDD EDSDASTSGQGLEYPSRIPEHYLGS
Sbjct: 1  MSSSISSNL--ESDLARRLESKLEEIENXRISDDGEDSDASTSGQGLEYPSRIPEHYLGS 60

Query: 61 LRRGSAIPENILLRIPEEGERADNPPEGWL 91
          LRRG AIPENILLR+PEEGERADNPPEGW+
Sbjct: 61 LRRGFAIPENILLRLPEEGERADNPPEGWV 88

[Close]
BLAST of Moc03g03470 vs. ExPASy TrEMBL
Match: A0A6J1DAX1 (uncharacterized protein LOC111019307 OS=Momordica charantia OX=3673 GN=LOC111019307 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.9e-05
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 95  MGGVSFSLWPSFSGYELGIVKRPSCW 121
           MGGVSFSLWPSF GYEL IVKRPSCW
Sbjct: 1   MGGVSFSLWPSFFGYELEIVKRPSCW 26

The following BLAST results are available for this feature:
BLAST of Moc03g03470 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159063.15.6e-3285.56uncharacterized protein LOC111025502, partial [Momordica charantia][more]
XP_022151345.11.0e-0492.31uncharacterized protein LOC111019307 [Momordica charantia][more]
BLAST of Moc03g03470 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc03g03470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DXS52.7e-3285.56uncharacterized protein LOC111025502 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DAX14.9e-0592.31uncharacterized protein LOC111019307 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
BLAST of Moc03g03470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc03g03470.1Moc03g03470.1mRNA