Moc03g02970 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc03g02970
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Locationchr3: 2274532 .. 2276096 (+)
RNA-Seq ExpressionMoc03g02970
SyntenyMoc03g02970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATCAAGGATCAAAAGTTGCTTAAATGGCTAGAAAGGATGAAAGCACCTCCGAATAAGAGAAGCAAGGGGCGATACTGCCTCTTCCACCAAGACCATGGGCATACCACACATGATTGTTTTGACCTCAAGGAGGAGGTGGAAGGGCTCATCCAGAAAGGGTATCTCAAGGAATATATGGACGATCCCAAAGCGACTCAAAATAGTGAGAACGACAACAAGTCTCCTGCCATGGAAATCCAGACAATAATGAGAGGTTCAACAGAAAAGGGAGTCTGGCAGGAAAAGGAAGGCGAACGTGCAGGAAGCAAGATCAAGCCTAGGGCATTATGAAATCTACCACACAGCTTTTGTAGGACAACCCTCAAAGATCGAATTTTCAGAGGATGAGACCACCACCCTCTTCCACCCACACAATGATGTGTTGGTTATCACCTTGCAGATAGCCAATACGAAGGTACACCGAATCTTGGTGGATGGGGCAGCTCGGCTGTCATCATCTCCTCAACAGCTTATGAGGCTATGGACTTAGGGGAAAAAATGCTTAAGAGCAGCCCCGCACTGCTAGTGGGTTTCAGGGGAGAATGGCCCATCCTAGAAGGCAAGGTGGAATGACCGGTCACAATCGGAAGTGGACTGAGAAGCGTCACCAAAATAGTGGAATTCCTCGTCGTTGACTACTCATCTTCCTACAATGCAATATTAGGAAGATTGACCATACATACGCTCAAAGCGATACCTTCTACGTACCATCAATCTATGAAATTCCCAATGCCTGGAGGTGTAGGTGAGGTCAAATGCTACTACACCTCGTTAAGAGGCTACAACTCAGGAATTGAGACCTCTACTTCGAAATGATCACGGCTACTTTGGGAACTAATGGATAGGGTGTAGGGTAGATGCAACCTTTCAAGGTTGTTTTCTTTTGTTTTTATCTTTTTCTACGGTTATGTTATTTGGTTATGCGTTGATTTTGGTTTAATAAAATTCTTATTATCTACTTGAGTAACCACTGTCATTACTTTCTGTGAACTCCTCAAGTAGGGGGCATATATGGAACAACAGAATATAAGGGAACAACTAAAGATCTCGATCAAGGCCAAACCAAAAGCAGGGGCCACTCAGTCTAGCACGGTTAAAACACGAGGCAGAGCGAGGAGTCAAGTAAACGACGAGAGTAGGGGGTGCAAAACTACTGGCCGTAGCCAACAGTTTAGAAACCCACAAGAATTAAAGGCAGACAAAGTCAACTCCGCCAAAATTAGAGCATTAAGCAAATAAAAGCTTGAAGAGATTTTATTAAAAATTCTGACGTACAGCCAACAACAGTAATAAGGAAAACAACAAAAATATTAGATTTTCTGAAACATGAAACATCAACAGACGACTTGACCCACGCTGTTTCTACTCGTCATCATCATTGTTGTCCATATCATCAGGGGCATTGCATTCAGCCTGGAAACACTCCTGAAGAAAGGAGTAATCGACGTCGGAGTGTTCCTCGGAGACCTGATGAAGAGACTAGGAGACGCCACATTCCATGGCGGAATTCTGTAAATTGA

mRNA sequence

ATGGAGATCAAGGATCAAAAGTTGCTTAAATGGCTAGAAAGGATGAAAGCACCTCCGAATAAGAGAAGCAAGGGGCGATACTGCCTCTTCCACCAAGACCATGGGCATACCACACATGATTGTTTTGACCTCAAGGAGGAGGTGGAAGGGCTCATCCAGAAAGGGTATCTCAAGGAATATATGGACGATCCCAAAGCGACTCAAAATAGTGAGAACGACAACAAGTCTCCTGCCATGGAAATCCAGACAATAATGAGAGGTTCAACAGAAAAGGGAGTCTGGCAGGAAAAGGAAGGCGAACATAGCCAATACGAAGGTACACCGAATCTTGGTGGATGGGGCAGCTCGGCTGTCATCATCTCCTCAACAGCTTATGAGGCTATGGACTTAGGGGAAAAAATGCTTAAGAGCAGCCCCGCACTGCTAGTGGGTTTCAGGGGAGAATGGCCCATCCTAGAAGGCAAGGGGCATTGCATTCAGCCTGGAAACACTCCTGAAGAAAGGAGTAATCGACGTCGGAGTGTTCCTCGGAGACCTGATGAAGAGACTAGGAGACGCCACATTCCATGGCGGAATTCTGTAAATTGA

Coding sequence (CDS)

ATGGAGATCAAGGATCAAAAGTTGCTTAAATGGCTAGAAAGGATGAAAGCACCTCCGAATAAGAGAAGCAAGGGGCGATACTGCCTCTTCCACCAAGACCATGGGCATACCACACATGATTGTTTTGACCTCAAGGAGGAGGTGGAAGGGCTCATCCAGAAAGGGTATCTCAAGGAATATATGGACGATCCCAAAGCGACTCAAAATAGTGAGAACGACAACAAGTCTCCTGCCATGGAAATCCAGACAATAATGAGAGGTTCAACAGAAAAGGGAGTCTGGCAGGAAAAGGAAGGCGAACATAGCCAATACGAAGGTACACCGAATCTTGGTGGATGGGGCAGCTCGGCTGTCATCATCTCCTCAACAGCTTATGAGGCTATGGACTTAGGGGAAAAAATGCTTAAGAGCAGCCCCGCACTGCTAGTGGGTTTCAGGGGAGAATGGCCCATCCTAGAAGGCAAGGGGCATTGCATTCAGCCTGGAAACACTCCTGAAGAAAGGAGTAATCGACGTCGGAGTGTTCCTCGGAGACCTGATGAAGAGACTAGGAGACGCCACATTCCATGGCGGAATTCTGTAAATTGA

Protein sequence

MEIKDQKLLKWLERMKAPPNKRSKGRYCLFHQDHGHTTHDCFDLKEEVEGLIQKGYLKEYMDDPKATQNSENDNKSPAMEIQTIMRGSTEKGVWQEKEGEHSQYEGTPNLGGWGSSAVIISSTAYEAMDLGEKMLKSSPALLVGFRGEWPILEGKGHCIQPGNTPEERSNRRRSVPRRPDEETRRRHIPWRNSVN
Homology
BLAST of Moc03g02970 vs. NCBI nr
Match: XP_022151636.1 (uncharacterized protein LOC111019544 [Momordica charantia])

HSP 1 Score: 188.7 bits (478), Expect = 4.6e-44
Identity = 109/196 (55.61%), Postives = 122/196 (62.24%), Query Frame = 0

Query: 1   MEIKDQKLLKWLERMKAPPNKRSKGRYCLFHQDHGHTTHDCFDLKEEVEGLIQKGYLKEY 60
           MEIKDQ+L KW ERMKA PNKRSKGRYCLFH+DHGH THDCFDLKEEVEG I KGYLKEY
Sbjct: 1   MEIKDQRLFKWPERMKASPNKRSKGRYCLFHRDHGHATHDCFDLKEEVEGFIPKGYLKEY 60

Query: 61  MDDPKATQNSENDNKSPAMEIQTIMRGSTEKGVWQEK--------------EGEHSQYEG 120
           M+DPKATQNSENDNKSPA EIQTIM GSTE    +++              E  H+ + G
Sbjct: 61  MEDPKATQNSENDNKSPAREIQTIMGGSTEWESGRKRKVSVREARTGLGHYEVYHTAFVG 120

Query: 121 TPN----------------------------------LGGWGSSAVIISSTAYEAMDLGE 149
            P+                                  L   GSSA IIS TAY+AMDLG+
Sbjct: 121 RPSKIEISEDETAHLFHPHNDALVITLQIANTRVHRILEDRGSSAGIISLTAYKAMDLGK 180

BLAST of Moc03g02970 vs. NCBI nr
Match: XP_022155873.1 (uncharacterized protein LOC111022886 [Momordica charantia])

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-43
Identity = 102/170 (60.00%), Postives = 115/170 (67.65%), Query Frame = 0

Query: 1   MEIKDQKLLKWLERMKAPPNKRSKGRYCLFHQDHGHTTHDCFDLKEEVEGLIQKGYLKEY 60
           MEIKDQ+LLKW ERMKAPP+KRSKG+Y LFH+DHGH T DCFDLKEEVEGLI+ GYLKEY
Sbjct: 17  MEIKDQRLLKWPERMKAPPSKRSKGQYWLFHRDHGHATQDCFDLKEEVEGLIRSGYLKEY 76

Query: 61  MDDPKATQNSENDNKSPAMEIQTIMRGSTEKGVWQEKEGEHSQYEGTPN----------- 120
           ++DPKATQN END+ SP  EI+TIM     K  + E E  H  +                
Sbjct: 77  VEDPKATQNGENDSNSPVREIRTIMEEQPAKLEFSEDEATHLFHPHNDALVITLKIANAK 136

Query: 121 ----LGGWGSSAVIISSTAYEAMDLGEKMLKSSPALLVGFRGEWPILEGK 156
               L   GSS  IIS TAY+AMDLGEK LKSSP  LVGF GE  I EG+
Sbjct: 137 VHRILVDGGSSTYIISLTAYKAMDLGEKALKSSPVPLVGFGGERVIPEGR 186

BLAST of Moc03g02970 vs. NCBI nr
Match: XP_022144467.1 (uncharacterized protein LOC111014147 [Momordica charantia])

HSP 1 Score: 178.3 bits (451), Expect = 6.3e-41
Identity = 100/167 (59.88%), Postives = 120/167 (71.86%), Query Frame = 0

Query: 1   MEIKDQKLLKWLERMKAPPNKRSKGRYCLFHQDHGHTTHDCFDLKEEVEGLIQKGYLKEY 60
           MEIKDQ+LLKW ERMKAP  KRSK RYCLFH+ HGH T DCFDLKEEVEGLI++GYLKEY
Sbjct: 1   MEIKDQRLLKWPERMKAPSAKRSKSRYCLFHRYHGHATQDCFDLKEEVEGLIRRGYLKEY 60

Query: 61  MDDPKATQNSENDNKSPAMEIQTIMRGSTEKGVWQEK------------EGEHSQYEGTP 120
           +++PKATQN E+D KSPA EI+TIM G  E+   +++            + E +  +   
Sbjct: 61  VEEPKATQNGESD-KSPAREIRTIMGGPIERESGRKRKADVREARTGREQNEIANVKVHR 120

Query: 121 NLGGWGSSAVIISSTAYEAMDLGEKMLKSSPALLVGFRGEWPILEGK 156
            L   GS A I+S TAY+AMDLGEK+LKSSPA LVGF GE  I EG+
Sbjct: 121 VLVDGGSLADILSWTAYKAMDLGEKVLKSSPAPLVGFGGERVIPEGR 166

BLAST of Moc03g02970 vs. NCBI nr
Match: XP_022157426.1 (uncharacterized protein LOC111024127 [Momordica charantia])

HSP 1 Score: 169.1 bits (427), Expect = 3.8e-38
Identity = 100/178 (56.18%), Postives = 117/178 (65.73%), Query Frame = 0

Query: 1   MEIKDQKLLKWLERMKAPPNKRSKGRYCLFHQDHGHTTHDCFDLKEEVEGLIQKGYLKEY 60
           MEIK  + LKW ERMKAPP KRSKGRYCL H+DHG+ T DCFDLKEEVEGL++ GYLKEY
Sbjct: 1   MEIKSHRFLKWPERMKAPPGKRSKGRYCLKHRDHGNATQDCFDLKEEVEGLMRIGYLKEY 60

Query: 61  MDDPKATQNSENDNKSPAMEIQTIMRGSTEK-GVWQEKEGEHSQYEGT----PN------ 120
           ++DPKATQNSEND K+PA EI+TIM G  E+  V  +   E S+ + T    P+      
Sbjct: 61  VEDPKATQNSENDCKTPAREIRTIMGGPVERESVKPQARIEFSEDQVTHLLHPHNDALVI 120

Query: 121 ------------LGGWGSSAVIISSTAYEAMDLGEKMLKSSPALLVGFRGEWPILEGK 156
                       L   GSSA II   AY+AM LG+K LKSSP LLV F GE  I EG+
Sbjct: 121 ILKIAHAKVHRILVDGGSSADIIFLAAYKAMSLGDKGLKSSPTLLVRFGGERVIPEGR 178

BLAST of Moc03g02970 vs. NCBI nr
Match: XP_022150028.1 (uncharacterized protein LOC111018300 [Momordica charantia])

HSP 1 Score: 167.9 bits (424), Expect = 8.5e-38
Identity = 102/203 (50.25%), Postives = 123/203 (60.59%), Query Frame = 0

Query: 1   MEIKDQKLLKWLERMKAPPNKRSKGRYCLFHQDHGHTTHDCFDLKEEVEGLIQKGYLKEY 60
           MEIK Q+LL+W ERM AP +KRSKGRYCLFH+DH H T DCFDLK+EV+ LIQ+GYLKEY
Sbjct: 9   MEIKYQRLLQWPERMNAPQSKRSKGRYCLFHRDHDHATQDCFDLKKEVKELIQRGYLKEY 68

Query: 61  MDDPKATQNSENDNKSPAMEIQTIMRGSTEKGVWQEKEG--------------------- 120
           ++DPKATQN END+KSPA EI+TIM G  E+   ++++                      
Sbjct: 69  VEDPKATQNGENDSKSPAREIRTIMGGPMEREFGRKRKASIRETRTSQVQHEIYHTFVAK 128

Query: 121 -----EHSQYEGT----PN------------------LGGWGSSAVIISSTAYEAMDLGE 156
                E S+ E T    P+                  L   GSSA IIS TAY+AMDLGE
Sbjct: 129 QPAKIEFSEDEATHLLHPHNDVLVITLKIANAKVHRILVDGGSSADIISLTAYKAMDLGE 188

BLAST of Moc03g02970 vs. ExPASy TrEMBL
Match: A0A6J1DF96 (uncharacterized protein LOC111019544 OS=Momordica charantia OX=3673 GN=LOC111019544 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 2.2e-44
Identity = 109/196 (55.61%), Postives = 122/196 (62.24%), Query Frame = 0

Query: 1   MEIKDQKLLKWLERMKAPPNKRSKGRYCLFHQDHGHTTHDCFDLKEEVEGLIQKGYLKEY 60
           MEIKDQ+L KW ERMKA PNKRSKGRYCLFH+DHGH THDCFDLKEEVEG I KGYLKEY
Sbjct: 1   MEIKDQRLFKWPERMKASPNKRSKGRYCLFHRDHGHATHDCFDLKEEVEGFIPKGYLKEY 60

Query: 61  MDDPKATQNSENDNKSPAMEIQTIMRGSTEKGVWQEK--------------EGEHSQYEG 120
           M+DPKATQNSENDNKSPA EIQTIM GSTE    +++              E  H+ + G
Sbjct: 61  MEDPKATQNSENDNKSPAREIQTIMGGSTEWESGRKRKVSVREARTGLGHYEVYHTAFVG 120

Query: 121 TPN----------------------------------LGGWGSSAVIISSTAYEAMDLGE 149
            P+                                  L   GSSA IIS TAY+AMDLG+
Sbjct: 121 RPSKIEISEDETAHLFHPHNDALVITLQIANTRVHRILEDRGSSAGIISLTAYKAMDLGK 180

BLAST of Moc03g02970 vs. ExPASy TrEMBL
Match: A0A6J1DP33 (uncharacterized protein LOC111022886 OS=Momordica charantia OX=3673 GN=LOC111022886 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 102/170 (60.00%), Postives = 115/170 (67.65%), Query Frame = 0

Query: 1   MEIKDQKLLKWLERMKAPPNKRSKGRYCLFHQDHGHTTHDCFDLKEEVEGLIQKGYLKEY 60
           MEIKDQ+LLKW ERMKAPP+KRSKG+Y LFH+DHGH T DCFDLKEEVEGLI+ GYLKEY
Sbjct: 17  MEIKDQRLLKWPERMKAPPSKRSKGQYWLFHRDHGHATQDCFDLKEEVEGLIRSGYLKEY 76

Query: 61  MDDPKATQNSENDNKSPAMEIQTIMRGSTEKGVWQEKEGEHSQYEGTPN----------- 120
           ++DPKATQN END+ SP  EI+TIM     K  + E E  H  +                
Sbjct: 77  VEDPKATQNGENDSNSPVREIRTIMEEQPAKLEFSEDEATHLFHPHNDALVITLKIANAK 136

Query: 121 ----LGGWGSSAVIISSTAYEAMDLGEKMLKSSPALLVGFRGEWPILEGK 156
               L   GSS  IIS TAY+AMDLGEK LKSSP  LVGF GE  I EG+
Sbjct: 137 VHRILVDGGSSTYIISLTAYKAMDLGEKALKSSPVPLVGFGGERVIPEGR 186

BLAST of Moc03g02970 vs. ExPASy TrEMBL
Match: A0A6J1CTS4 (uncharacterized protein LOC111014147 OS=Momordica charantia OX=3673 GN=LOC111014147 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 3.0e-41
Identity = 100/167 (59.88%), Postives = 120/167 (71.86%), Query Frame = 0

Query: 1   MEIKDQKLLKWLERMKAPPNKRSKGRYCLFHQDHGHTTHDCFDLKEEVEGLIQKGYLKEY 60
           MEIKDQ+LLKW ERMKAP  KRSK RYCLFH+ HGH T DCFDLKEEVEGLI++GYLKEY
Sbjct: 1   MEIKDQRLLKWPERMKAPSAKRSKSRYCLFHRYHGHATQDCFDLKEEVEGLIRRGYLKEY 60

Query: 61  MDDPKATQNSENDNKSPAMEIQTIMRGSTEKGVWQEK------------EGEHSQYEGTP 120
           +++PKATQN E+D KSPA EI+TIM G  E+   +++            + E +  +   
Sbjct: 61  VEEPKATQNGESD-KSPAREIRTIMGGPIERESGRKRKADVREARTGREQNEIANVKVHR 120

Query: 121 NLGGWGSSAVIISSTAYEAMDLGEKMLKSSPALLVGFRGEWPILEGK 156
            L   GS A I+S TAY+AMDLGEK+LKSSPA LVGF GE  I EG+
Sbjct: 121 VLVDGGSLADILSWTAYKAMDLGEKVLKSSPAPLVGFGGERVIPEGR 166

BLAST of Moc03g02970 vs. ExPASy TrEMBL
Match: A0A6J1DY17 (uncharacterized protein LOC111024127 OS=Momordica charantia OX=3673 GN=LOC111024127 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38
Identity = 100/178 (56.18%), Postives = 117/178 (65.73%), Query Frame = 0

Query: 1   MEIKDQKLLKWLERMKAPPNKRSKGRYCLFHQDHGHTTHDCFDLKEEVEGLIQKGYLKEY 60
           MEIK  + LKW ERMKAPP KRSKGRYCL H+DHG+ T DCFDLKEEVEGL++ GYLKEY
Sbjct: 1   MEIKSHRFLKWPERMKAPPGKRSKGRYCLKHRDHGNATQDCFDLKEEVEGLMRIGYLKEY 60

Query: 61  MDDPKATQNSENDNKSPAMEIQTIMRGSTEK-GVWQEKEGEHSQYEGT----PN------ 120
           ++DPKATQNSEND K+PA EI+TIM G  E+  V  +   E S+ + T    P+      
Sbjct: 61  VEDPKATQNSENDCKTPAREIRTIMGGPVERESVKPQARIEFSEDQVTHLLHPHNDALVI 120

Query: 121 ------------LGGWGSSAVIISSTAYEAMDLGEKMLKSSPALLVGFRGEWPILEGK 156
                       L   GSSA II   AY+AM LG+K LKSSP LLV F GE  I EG+
Sbjct: 121 ILKIAHAKVHRILVDGGSSADIIFLAAYKAMSLGDKGLKSSPTLLVRFGGERVIPEGR 178

BLAST of Moc03g02970 vs. ExPASy TrEMBL
Match: A0A6J1D8C9 (uncharacterized protein LOC111018300 OS=Momordica charantia OX=3673 GN=LOC111018300 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.1e-38
Identity = 102/203 (50.25%), Postives = 123/203 (60.59%), Query Frame = 0

Query: 1   MEIKDQKLLKWLERMKAPPNKRSKGRYCLFHQDHGHTTHDCFDLKEEVEGLIQKGYLKEY 60
           MEIK Q+LL+W ERM AP +KRSKGRYCLFH+DH H T DCFDLK+EV+ LIQ+GYLKEY
Sbjct: 9   MEIKYQRLLQWPERMNAPQSKRSKGRYCLFHRDHDHATQDCFDLKKEVKELIQRGYLKEY 68

Query: 61  MDDPKATQNSENDNKSPAMEIQTIMRGSTEKGVWQEKEG--------------------- 120
           ++DPKATQN END+KSPA EI+TIM G  E+   ++++                      
Sbjct: 69  VEDPKATQNGENDSKSPAREIRTIMGGPMEREFGRKRKASIRETRTSQVQHEIYHTFVAK 128

Query: 121 -----EHSQYEGT----PN------------------LGGWGSSAVIISSTAYEAMDLGE 156
                E S+ E T    P+                  L   GSSA IIS TAY+AMDLGE
Sbjct: 129 QPAKIEFSEDEATHLLHPHNDVLVITLKIANAKVHRILVDGGSSADIISLTAYKAMDLGE 188

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022151636.14.6e-4455.61uncharacterized protein LOC111019544 [Momordica charantia][more]
XP_022155873.12.3e-4360.00uncharacterized protein LOC111022886 [Momordica charantia][more]
XP_022144467.16.3e-4159.88uncharacterized protein LOC111014147 [Momordica charantia][more]
XP_022157426.13.8e-3856.18uncharacterized protein LOC111024127 [Momordica charantia][more]
XP_022150028.18.5e-3850.25uncharacterized protein LOC111018300 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DF962.2e-4455.61uncharacterized protein LOC111019544 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A6J1DP331.1e-4360.00uncharacterized protein LOC111022886 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1CTS43.0e-4159.88uncharacterized protein LOC111014147 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A6J1DY171.8e-3856.18uncharacterized protein LOC111024127 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1D8C94.1e-3850.25uncharacterized protein LOC111018300 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..189

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc03g02970.1Moc03g02970.1mRNA