Moc03g02910 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc03g02910
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr3: 2209478 .. 2211420 (+)
RNA-Seq ExpressionMoc03g02910
SyntenyMoc03g02910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGAATTGATGAAGTCGCGTCAGCGATCAGTTGCATCAGAGAAGATCAACCATGTAGGTGCTGAGGTTAATGAAGTTTCAATTATGGTGGCAGGTTTAGATAGAGTTGTAAAGCATCAGTGGGAAGTTCTTTCTTCAAGAATCAGTGTTTGAGAATAAAAAAGGAAGCTTCAGATATCGTCACTTAGTTTGAGTGGGAGCATGTGGTTGTGTTTTTTGCGTCTGAGAGACAAGACCACATAGATTGCTCAACCTCAGGACAAATACAGATGAGACTAGTGATTTCTAATATTTTGTTTTACAAGTTTTTAAACTTGCAGAATAAGATTTTTTCAAAAAAATCAGAAGTTGTTGCAGAAGAAGTCTTGAAGTTTTCCAAGAGTATTAGAGACTGTTGTTGCAGTGGGAGGCAAGATCGATGTTTTGTCTCCAAGTGGGAGATTGTTGGGATAATGGAGCCAAAACAGATGATCCATGTTCTACGAGGAAAAATATTTTCAACATTACTACCAATTCCTACAAGGAGTAGGATATTATTGTCTTATAAGGATTACAATATTATTTTCCTATAAGGATTGAGATATTTGAGCTTTTATAAATAGAACCATTTTGTTAAGGTTTCATGTGTACAGAATCCAAATAAGAAAGACTTGAGTGGTTGTGGGCAGTGTGTGAAAAAATGAGTTTGTATCTCGTGGGTTTAGTGAGGGTATTTTCAATTGTGTAATCATAGATAGCCATTGTTAAGATACTTAGAAGCAAGATATATAGTAATATCCTGAATGAGATCTCCATTGTAATATTCCCAACTATAGTTGAACCTGTTTTTTCGCAGAAGATTGGACGTAGTCCCAAGGTAGGGGTGAACCAGTATAATCAATGTGGTTTTAAGTTTTTCTATCCCTATTTATTATTGTTACTTACTTATCTGCTTTTAGCCCGTGGAAGGGGAAAATCAAATAGTTCCTCTTTGAAGAACTTACAGGATGATCGATTAATCTATATATTTTTTCCAATAAGAAGAGTGTTAACGAGCCATTAGAATAATTAATATCTCTCTTGAATCAATGGACATGGTTGCTTCTATGGAATTTTCAAAGAAACATAATACTATTCAGTTCTGTCAAAAGGATAATCATTAATTTTGTACATATTGTGGACTTAGAGATCATGTAGTTGACAAATGCTACAAGCTCGGATATCGTACACAAAATTCGATCGCTGCTTGATCTACTCATGCCACAATTCTTCCACCTCAACTTATGCTGCTACTGCTAATTAGTTTTCAAATAAGACTATTGACACTTCAACAACCTTTCCTTCTCCGCTTCTTCAATAGTTTGAGTTCCAACAATTATTCTTAAGGAATGGGGATGCTCAAATCTCACCTTTAGGCTGCAAATTCAGACAATATTACACTTGAGGCCCCTCATCTTGTAGGTACTAATCTTCTGGTATTATCTTCTACTGCTAGTATTTGTTCTAGTACTTTGATTGTCGATTTTGGGGCTTTTGGCCATATCTGTAATCTATGTACTCTCTTCTTGGATATTTGTCTTGCTTCCAAAATTAATGTTGTTTTACCAACACATTCTCAGATTTCGGTGGAGTTTATTGGCACGATTAAGATATCAAAAGACTTTGTTCTTCATGATGTTCTCTTCATACATCAGTTTACTTACAATTTACTCCCTGTGAGTGCTCTGCTAAAGCATGGTTGTTTTAAACTTGAATTTTGTAGTGATTCTTGCTTCATTCAGGACAAGTTACTATTGAAGATGATTGGTAAGGCTGACTGCATAAATGGGTTTTATTCCTCTCATTGCTGCTGCCTTCCACTCATGTTCTTCACAATGTCCCTAACCTTGCTTGTTATATTTGATTTGATACTTGGCACAAGCGTTTGGGACACCCTTCCCCTACTCGACTTGCAGTTTTGA

mRNA sequence

ATGGGTGAATTGATGAAGTCGCGTCAGCGATCAGTTGCATCAGAGAAGATCAACCATGTAGGTGCTGAGGTTAATGAAGTTTCAATTATGGTGGCAGGTTTAGATAGAGTTGTAAAGCATCAGTGGGAAGTTCTTTCTTCAAGAATCAGTAATAAGATTTTTTCAAAAAAATCAGAAGTTGTTGCAGAAGAAGTCTTGAAGTTTTCCAAGAGTATTAGAGACTGTTGTTGCAGTGGGAGGCAAGATCGATGTTTTGTCTCCAAGTGGGAGATTGTTGGGATAATGGAGCCAAAACAGATGATCCATGCTGCAAATTCAGACAATATTACACTTGAGGCCCCTCATCTTGTAGGTACTAATCTTCTGGTATTATCTTCTACTGCTAGTATTTGTTCTAGTACTTTGATTGTCGATTTTGGGGCTTTTGGCCATATCTGTAATCTATGTACTCTCTTCTTGGATATTTGTCTTGCTTCCAAAATTAATGTTGTTTTACCAACACATTCTCAGATTTCGGTGGAGTTTATTGGCACGATTAAGATATCAAAAGACTTTGTTCTTCATGATGTTCTCTTCATACATCAGTTTACTTACAATTTACTCCCTGTGAGTGCTCTGCTAAAGCATGGTTGTTTTAAACTTGAATTTTGTAGTGATTCTTGCTTCATTCAGGACAAGTTACTATTGAAGATGATTGGTAAGGCTGACTGCATAAATGGGTTTTATTCCTCTCATTGCTGCTGCCTTCCACTCATGTTCTTCACAATGTCCCTAACCTTGCTTGTTATATTTGATTTGATACTTGGCACAAGCGTTTGGGACACCCTTCCCCTACTCGACTTGCAGTTTTGA

Coding sequence (CDS)

ATGGGTGAATTGATGAAGTCGCGTCAGCGATCAGTTGCATCAGAGAAGATCAACCATGTAGGTGCTGAGGTTAATGAAGTTTCAATTATGGTGGCAGGTTTAGATAGAGTTGTAAAGCATCAGTGGGAAGTTCTTTCTTCAAGAATCAGTAATAAGATTTTTTCAAAAAAATCAGAAGTTGTTGCAGAAGAAGTCTTGAAGTTTTCCAAGAGTATTAGAGACTGTTGTTGCAGTGGGAGGCAAGATCGATGTTTTGTCTCCAAGTGGGAGATTGTTGGGATAATGGAGCCAAAACAGATGATCCATGCTGCAAATTCAGACAATATTACACTTGAGGCCCCTCATCTTGTAGGTACTAATCTTCTGGTATTATCTTCTACTGCTAGTATTTGTTCTAGTACTTTGATTGTCGATTTTGGGGCTTTTGGCCATATCTGTAATCTATGTACTCTCTTCTTGGATATTTGTCTTGCTTCCAAAATTAATGTTGTTTTACCAACACATTCTCAGATTTCGGTGGAGTTTATTGGCACGATTAAGATATCAAAAGACTTTGTTCTTCATGATGTTCTCTTCATACATCAGTTTACTTACAATTTACTCCCTGTGAGTGCTCTGCTAAAGCATGGTTGTTTTAAACTTGAATTTTGTAGTGATTCTTGCTTCATTCAGGACAAGTTACTATTGAAGATGATTGGTAAGGCTGACTGCATAAATGGGTTTTATTCCTCTCATTGCTGCTGCCTTCCACTCATGTTCTTCACAATGTCCCTAACCTTGCTTGTTATATTTGATTTGATACTTGGCACAAGCGTTTGGGACACCCTTCCCCTACTCGACTTGCAGTTTTGA

Protein sequence

MGELMKSRQRSVASEKINHVGAEVNEVSIMVAGLDRVVKHQWEVLSSRISNKIFSKKSEVVAEEVLKFSKSIRDCCCSGRQDRCFVSKWEIVGIMEPKQMIHAANSDNITLEAPHLVGTNLLVLSSTASICSSTLIVDFGAFGHICNLCTLFLDICLASKINVVLPTHSQISVEFIGTIKISKDFVLHDVLFIHQFTYNLLPVSALLKHGCFKLEFCSDSCFIQDKLLLKMIGKADCINGFYSSHCCCLPLMFFTMSLTLLVIFDLILGTSVWDTLPLLDLQF
Homology
BLAST of Moc03g02910 vs. NCBI nr
Match: KAA0065480.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >TYK08721.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-12
Identity = 55/142 (38.73%), Postives = 75/142 (52.82%), Query Frame = 0

Query: 101 IHAANSDNITLEAPHLVGTNLLVLSSTASICSSTLIVDFGAFGHICNLCTLFLDICLASK 160
           + AA +  IT        + +  L+S  +      I+D GA  HIC+  +LF +    + 
Sbjct: 346 LQAATTAPITTATAITHTSGIFALTSHNNQSHDEWIIDSGASRHICHDKSLFKNWSHTNN 405

Query: 161 INVVLPTHSQISVEFIGTIKISKDFVLHDVLFIHQFTYNLLPVSALLKHGCFKLEFCSDS 220
           + V+LP   +ISV+ IG I+I+    L DVLF+ QF YNL+ VS LL      L+F S  
Sbjct: 406 MFVMLPNGHRISVDLIGDIQINGSLTLKDVLFVSQFAYNLISVSCLLITKNISLDFQSTC 465

Query: 221 CFIQDKLLLKMIGKADCINGFY 243
           C IQD     MIGKA C NG Y
Sbjct: 466 CIIQDLSRPMMIGKASCQNGLY 487

BLAST of Moc03g02910 vs. NCBI nr
Match: KAG7609732.1 (Retrotransposon gag domain [Arabidopsis suecica])

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-12
Identity = 49/148 (33.11%), Postives = 77/148 (52.03%), Query Frame = 0

Query: 95  MEPKQMIHAANSDNITLEAPHLVGTNLLVLSSTASICSSTLIVDFGAFGHICNLCTLFLD 154
           ++PK     +NS   T  A +++  N   +S  A     + I+D GA  H+C+  TLF D
Sbjct: 290 LDPKAQF--SNSRPTTQHAANMMNGNQQAIS--APNVDGSWIIDTGATSHVCSDLTLFND 349

Query: 155 ICLASKINVVLPTHSQISVEFIGTIKISKDFVLHDVLFIHQFTYNLLPVSALLKHGCFKL 214
               + + V LP  +++ +   GTI +S   +LHDVL +  F +NL+ VS+LLKH     
Sbjct: 350 TVTVTGVTVSLPNATRVEIAHTGTIHLSSSLILHDVLHVPSFKFNLISVSSLLKHSNASA 409

Query: 215 EFCSDSCFIQDKLLLKMIGKADCINGFY 243
            F  D C+I + +   MIGK   ++  Y
Sbjct: 410 HFFPDFCYIHESIQDLMIGKGVLLHNLY 433

BLAST of Moc03g02910 vs. NCBI nr
Match: KAG7578814.1 (GAG-pre-integrase domain [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-12
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 0

Query: 124 LSSTASIC-SSTLIVDFGAFGHICNLCTLFLDICLASKINVVLPTHSQISVEFIGTIKIS 183
           LSS  S+  +   I+D GA  H+C+   +F +    + + V LP  +++ +   GT+ IS
Sbjct: 204 LSSLYSVLPNGAWIIDSGATSHVCSDLAMFSETFPVTGVTVSLPNGTRVPISHTGTVHIS 263

Query: 184 KDFVLHDVLFIHQFTYNLLPVSALLKHGCFKLEFCSDSCFIQDKLLLKMIGKADCINGFY 243
              +LHDVL++  F +NLL VS+LLKH      F +DSC+IQD     MIGK   I+  Y
Sbjct: 264 TSLILHDVLYVSTFKFNLLSVSSLLKHDNCSAHFYTDSCYIQDHTRDLMIGKGILIHSLY 323

BLAST of Moc03g02910 vs. NCBI nr
Match: KAG7551573.1 (Zinc finger CCHC-type [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 83.2 bits (204), Expect = 4.0e-12
Identity = 45/120 (37.50%), Postives = 69/120 (57.50%), Query Frame = 0

Query: 124 LSSTASIC-SSTLIVDFGAFGHICNLCTLFLDICLASKINVVLPTHSQISVEFIGTIKIS 183
           LSS  S+  +   I++ GA  H+C+   +F +    + + V LP  +++ +  IGT+ IS
Sbjct: 452 LSSLYSVLPNGAWIIESGATSHVCSDLAMFSETFPVTGVTVSLPNGTRVPISHIGTMHIS 511

Query: 184 KDFVLHDVLFIHQFTYNLLPVSALLKHGCFKLEFCSDSCFIQDKLLLKMIGKADCINGFY 243
              +LHDVL++  F +NLL +S+LLKH      F +DSC+IQD     MIGK   I+  Y
Sbjct: 512 TSLILHDVLYVSTFKFNLLSISSLLKHDNCSAHFYTDSCYIQDHTRDLMIGKGILIHSLY 571

BLAST of Moc03g02910 vs. NCBI nr
Match: KYP64431.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 83.2 bits (204), Expect = 4.0e-12
Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = 0

Query: 136 IVDFGAFGHICNLCTLFLDICLASKINVVLPTHSQISVEFIGTIKISKDFVLHDVLFIHQ 195
           I+D GA  H+C   T F        I + LP  S +  +F GTI++S+DFVL+DVL++ +
Sbjct: 11  ILDTGATDHVCQSLTYFDAFTAIRPIQIKLPNGSAVLAKFSGTIRLSRDFVLYDVLYVPE 70

Query: 196 FTYNLLPVSALLKHGCFKLEFCSDSCFIQDKLLLKMIGKADCINGFY 243
           F YNL+ +  L K    KL F    C IQD   LKMIG+AD  N  Y
Sbjct: 71  FKYNLISIPKLTKTIKCKLIFDDLHCVIQDMTTLKMIGRADVQNCLY 117

BLAST of Moc03g02910 vs. ExPASy TrEMBL
Match: A0A5A7VE66 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00250 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.1e-13
Identity = 55/142 (38.73%), Postives = 75/142 (52.82%), Query Frame = 0

Query: 101 IHAANSDNITLEAPHLVGTNLLVLSSTASICSSTLIVDFGAFGHICNLCTLFLDICLASK 160
           + AA +  IT        + +  L+S  +      I+D GA  HIC+  +LF +    + 
Sbjct: 346 LQAATTAPITTATAITHTSGIFALTSHNNQSHDEWIIDSGASRHICHDKSLFKNWSHTNN 405

Query: 161 INVVLPTHSQISVEFIGTIKISKDFVLHDVLFIHQFTYNLLPVSALLKHGCFKLEFCSDS 220
           + V+LP   +ISV+ IG I+I+    L DVLF+ QF YNL+ VS LL      L+F S  
Sbjct: 406 MFVMLPNGHRISVDLIGDIQINGSLTLKDVLFVSQFAYNLISVSCLLITKNISLDFQSTC 465

Query: 221 CFIQDKLLLKMIGKADCINGFY 243
           C IQD     MIGKA C NG Y
Sbjct: 466 CIIQDLSRPMMIGKASCQNGLY 487

BLAST of Moc03g02910 vs. ExPASy TrEMBL
Match: A0A151TBK6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_019027 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-12
Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = 0

Query: 136 IVDFGAFGHICNLCTLFLDICLASKINVVLPTHSQISVEFIGTIKISKDFVLHDVLFIHQ 195
           I+D GA  H+C   T F        I + LP  S +  +F GTI++S+DFVL+DVL++ +
Sbjct: 11  ILDTGATDHVCQSLTYFDAFTAIRPIQIKLPNGSAVLAKFSGTIRLSRDFVLYDVLYVPE 70

Query: 196 FTYNLLPVSALLKHGCFKLEFCSDSCFIQDKLLLKMIGKADCINGFY 243
           F YNL+ +  L K    KL F    C IQD   LKMIG+AD  N  Y
Sbjct: 71  FKYNLISIPKLTKTIKCKLIFDDLHCVIQDMTTLKMIGRADVQNCLY 117

BLAST of Moc03g02910 vs. ExPASy TrEMBL
Match: A0A151QUK0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_045148 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-12
Identity = 52/137 (37.96%), Postives = 72/137 (52.55%), Query Frame = 0

Query: 106 SDNITLEAPHLVGTNLLVLSSTASICSSTLIVDFGAFGHICNLCTLFLDICLASKINVVL 165
           S N     P + G  L +  S  SI S+  I+D GA  H+    +LF    +    +V L
Sbjct: 140 SSNCIESNPIVNGLLLSIRPSFNSIPSTKWILDSGASTHVACSLSLFKTYKIIKNRHVTL 199

Query: 166 PTHSQISVEFIGTIKISKDFVLHDVLFIHQFTYNLLPVSALLKHGCFKLEFCSDSCFIQD 225
           P  S I V  IGT+ + +D VL DV+++ QF YNLL ++ LLKH    L F S+   +QD
Sbjct: 200 PNQSHIPVCGIGTVYLDQDIVLKDVIYVPQFQYNLLSINCLLKHNSLSLLFISNKFILQD 259

Query: 226 KLLLKMIGKADCINGFY 243
            L  KMIG  + + G Y
Sbjct: 260 ILHNKMIGAGEAVQGVY 276

BLAST of Moc03g02910 vs. ExPASy TrEMBL
Match: A0A151U9A5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_020114 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-12
Identity = 52/137 (37.96%), Postives = 72/137 (52.55%), Query Frame = 0

Query: 106 SDNITLEAPHLVGTNLLVLSSTASICSSTLIVDFGAFGHICNLCTLFLDICLASKINVVL 165
           S N     P + G  L +  S  SI S+  I+D GA  H+    +LF    +    +V L
Sbjct: 323 SSNCIESNPIVNGLLLSIRPSFNSIPSTKWILDSGASTHVACSLSLFKTYKIIKNRHVTL 382

Query: 166 PTHSQISVEFIGTIKISKDFVLHDVLFIHQFTYNLLPVSALLKHGCFKLEFCSDSCFIQD 225
           P  S I V  IGT+ + +D VL DV+++ QF YNLL ++ LLKH    L F S+   +QD
Sbjct: 383 PNQSHIPVCGIGTVYLDQDIVLKDVIYVPQFQYNLLSINCLLKHNSLSLLFISNKFILQD 442

Query: 226 KLLLKMIGKADCINGFY 243
            L  KMIG  + + G Y
Sbjct: 443 ILHNKMIGTGEAVQGVY 459

BLAST of Moc03g02910 vs. ExPASy TrEMBL
Match: A0A392LXD3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium medium OX=97028 GN=A2U01_0000362 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-11
Identity = 48/141 (34.04%), Postives = 71/141 (50.35%), Query Frame = 0

Query: 103 AANSDNITLEAPHLVGTNLLVLS-STASICSSTLIVDFGAFGHICNLCTLFLDICLASKI 162
           ++N   + +   H  G + L  S S  S      I+D GA  HIC+  T F        +
Sbjct: 377 SSNPAQVNVVQHHHSGISCLAYSLSMISSSQDNWIIDSGASDHICSSITYFASYHEIDPV 436

Query: 163 NVVLPTHSQISVEFIGTIKISKDFVLHDVLFIHQFTYNLLPVSALLKHGCFKLEFCSDSC 222
            V +   S    +  GT++ S+DF LHDVL +  FT+NL+ VS L     + + F    C
Sbjct: 437 QVKMANGSISYAKIAGTVQFSRDFYLHDVLLVTDFTFNLISVSKLSDPSKYIVLFDGVYC 496

Query: 223 FIQDKLLLKMIGKADCINGFY 243
           +IQ+K+ LKMIG  + +NG Y
Sbjct: 497 YIQEKMSLKMIGSGELLNGLY 517

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0065480.11.1e-1238.73Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >T... [more]
KAG7609732.12.3e-1233.11Retrotransposon gag domain [Arabidopsis suecica][more]
KAG7578814.12.3e-1238.33GAG-pre-integrase domain [Arabidopsis thaliana x Arabidopsis arenosa][more]
KAG7551573.14.0e-1237.50Zinc finger CCHC-type [Arabidopsis thaliana x Arabidopsis arenosa][more]
KYP64431.14.0e-1242.99Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VE665.1e-1338.73Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O... [more]
A0A151TBK61.9e-1242.99Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=... [more]
A0A151QUK02.5e-1237.96Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=... [more]
A0A151U9A52.5e-1237.96Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=... [more]
A0A392LXD32.8e-1134.04Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium medium ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc03g02910.1Moc03g02910.1mRNA