Moc03g02490 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc03g02490
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Locationchr3: 1875170 .. 1880633 (-)
RNA-Seq ExpressionMoc03g02490
SyntenyMoc03g02490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTACCGGGGAGGAGATCGTCGGAGTGCCAGCGGGCTTGGAAGAAGCTGTGAAGAAGAAGGTTGTTGCTGCTGTCGTTCGCGTCGTTCCCTTGCGTCGTCGGAGGTCGTGGGTATGCAAGAGAAAAGTGGTGATGGTGGGATAAGAGAGATGGAGAGAAGAAGATATGGTGATGAGGTGATGAGTTTCTAACTCTCTGCACTCTGTCTTTCTGTGTGTCTCTATGTGTCCCTTAAATACACAAATAAAATAACAGTAACATGCGTGAGTTAAGTAAAACCAGAGAGAAAAAAAAGGAAGGGAAAACGTAAAGCATGACACCTGTAGAACCTTGACCAAGAAAAAATCAAAGGGAGGGAAAAAAAGCTGTTAATAACAAAAATAAAATCTTTATTTTTTAATTTGTAATTTTATTAATAAAATCAAAATTTTTAAAAGAAAACTTTTTTTAAAAAAATTTAAATTAAAATTTTAGCTTATAAAAAATAATAAAGTAATCTTTTTTAATGAAGATATTTAAAAATAATAATAATAAATAAAAAAAATTAGCCGGACCAATAACGATGTCTACAGCTTGCCCCCCTTTGTGTATCCTTGCAGAGCTAAAAGGGTAGACAAAGGCAAAAGACAAAGTATTGGGAAGGCGAAATTTTTGTTCAGATAATGTATGATATAGATGGATTCAGCTTGACACTAGGTGGGATCCCGACATGCAAAGAACCACGTACTTGATATAGGCTTTAACCTCGATCTTGGATCGGGTTTGATTTAATCAAATGATAAAATGCAACGGACTTGGCTTTAACAACAAGCTTCGACCTCGACTTGGATCGAGTTCGATTTAACCGAAAGATAAAATGCAACGGACCTGGCTTTAACAACAGGCTTCTACCTCGACTTGGATCGGGTTCGATTTAACCGAAAGATAAAATGTAACGGACCTAGCTTTAACAATAGGCTTCGACCTCGACTTGGATCAGGTTCGATTTAACCGAAAGATAATGCAATGAACCTGGCTATAACAACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCAAATGATAAAATGCGACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAAAGATATAATGTAACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAATGATAAAATGCAACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAATGATAAAATGCAAAGGACCTGGCTTTAACAATAGGCTTCGACCTCGACTTGGATCAGGTTCGATTCAACCAAATGATAATGCAATCGACCTGGCTTTAACAACAGTCTTCGACCTCGACTTGGATCGGATTCGATTTAACCAAATGATAAAAGGCGACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATTGAGTTCGATTTAACCAAAGATAAATGTTTGATCACAAAAATTACCAAGCTTACAAGCTCGGCTTGGACGAAATTATGACCTTGAGGATAAGCTGAATTTTTATGAGCAGGATACTGGTAAGAGAAAACACTCTGACGCCAAGTCAGGAAGAATCCGAGTTGTATTAGAGAGAAAATACAGTGTTTGCGTACCTTTGACAGAGGCAAATGGTTTCTATATATAGGTAGGGTCTCTGAGAGGATTCCTGATAAGGCCTCAACGGCCATTTAAGGTAAGCTTGAATCACGACATCCTATCGTGGAGTTTGTCAGAATATGAGGCTAAGCGAGACACATCTAGGTCAATTCAAACAAGGTCAGTTCAAACAAAGAATGGGAACGGGACCAAAGGAAATCTTGGTCGGATCGATCATAACGGCACCGGCTCGAAAGATAGTCGAAATACCTAGGTGATAAAACTTGGCTTCACAAATTTAATGACACGTGTGAGATAGAAAACTAGCTCTAACAGATTAAAATGCAATTTCTAAAAAAAAAACTGCAATTATTTGATTTACTAGAGGTTTATTATCTAAGTGTTGGACTTGGAATATCCTCCTAAAAGCTAAGTGCATGTGATATGCACTTTGACACATGACAATAAGACTAACAAAAACCACGTGTTTATGCTAATGAGAACTTCCAATGGCATCGTAGCGGGAGTCTGACATCCGAGCGAGAGGTTAGACCAATTCTATTTATCTTGGCAACCGACACTACACTGCGTAGATACCTGTGCAGGTGAGACGTCGATCAGTCATTTAATTGCGTCCTCTTGTAAACGAAAGAGCTCCATGCCAGAAATAGTTAATGAAAATCGGGTACCTTGTTGCTAACAATTGAGTGTGGCCTATCAACTAGCTCTAACTCTAAAGGTCGAGAAAAATCTAAAGAGATTTGTAGGAGGCTCTACGGGAAGCCGCTGCGCGACCTCTGACGCAACTATTTTATGATGGATTGGTGCATCTACAAATGTGTATTGCCCCAATATCATGAATGACAAATGATGCTCCATTTATTACTTCCATTTATTCTTATCACTTAACAATGTGTGATAGTATATGATCTGTTTTTTATTTAGTTTAACCAATGAATTTGAGCTTCAATACATGATGCAATAATGTATATGCATTCTAAAAGCTAAATGGTTGCAACATGTATGCATGATGCTCATTTTATTTTTGCTCAAATAATAGAATGTGGCTATGAATGCACAATGCATCATATTTAAATTTTCACAACTTAACCATGATGTGAAAACGATTTATTTTTTTGAAGAATATATATGCAAGTGATGTGAATGCATGATTTGTGAAAATATGGTTGAGAGAACAAGAAATTTTTCCATATTTTGCAAAGATATTACTTTTTTGTATACTCTCATCCTTCTTATTAGCAATAATTTAGCAAAGAAACAAATGAGAAAAGGTAATGTCAACATTGGAAGAAACAAATCAACTGATCTTTTTTTTTTTTTTGAATGCCTTCACTCAATCAAGGCAATTTCTCAAACTATATCAGGCTTGGTGGGCTTCTTTTGTAGAGGTAACTCATGTGCCAGTTTAGAATAATTCATAGCATTGTACATCTTGCTTGATTAAACTGCTTCATAACCTCGGCCTTGCAATTGACAAGATTGTTGGATGGATTTGGCTTTATGAACAAACGAGGATGGAAACCATGATTTTCCATCAAGCTTAACGATGAGAGAAGTCAGCGAGCTTCCTTTTTAAAGAAAATGAAACAAAGAGTTCAAAGATATTTTGTCAAATCTCTTGAACAATAAAAGATTGATTTTTTTTTAAGCTTTTATAAGAGATTATGACCAAGTGAATAGAAGAGTCCAATTCTTTGGATAAGTGACCTTGAGAATGGGTTGCGTAACTCCCCAAGAGTTCATCTCGTGTATCTTGCCCCTTTTTGAGTTTAGCTCAAGATCTTTGATAAAAATATTCTTTCTCGCCTTTAGCTTCACTTTATGGTTATGTTGCTGTAACCCACTTTTTAAATGTAAGGCTCTCTTTTAACCTTAGCTTTGAAGTGCAGTTGATGTAGTCCACTTTTGAATGCAAATGACCTCTTTTTTTCTCAAAGTGAAGAAGATTTTGCGCGAGGAGAAATGTAACAATATCAGTCCGAAGATGACCTTTGCCTCAAAGCTTTGTATAATGTAGTTACAAATTTGCCTCGACATAGCATTGCTCGACTTTGCCCCAGTCTGAAGATTTGCAAAGAAGATTGCTCCAATCATTGAACTAAAGCACTGTCATGGCCCTAGACGAAGTTCTTTTTTTTGGCCTGACACAACCCTTTTATAAAAAAAAAAGATGCAATCACATATAAAAAGTTGATCATGCATAGTCGCCTTTTGCAACTCTAATTGCTGTTCCAAATTATGTCTTTACTACTGCTCCAGTAAAAACTGTTCTCAAACGAAACTTATCAAACTGAGATCTTGAGACTATTTGTCAGGTTGCTAACTTCCCAATTCTCAAAACTATTATCCTCAGTCTTGGAATCACTTTTACTTAAAAGAAGATAAGAGACCAGGAGAACACGATGAAATAGAAAGTGAAAGAAGGAAGTCTTAGTAGGGAAATTTTTGAGCAACTACAAGTACCAATTCATAAAGCAGTCAATCATAAGAGCTCAATGTTATTTTATTACTTTCAAAGTTCTCAGGGCAACACTAGGTGGATAAATTTGGACATTTGCCACGCAATTAGGTGTGGCAGGCTTGGTAAAAGGCCTTTATGGTAAATAGGCAAATATGGATATTCATCACAAAAATGATATGTGACGGGCTGAGCAAAGGATTTTTGCAGTAAATGATCAACTCTCAATGTTGACCATATTTACCATGTTAGGCTCAAGGTAGATTAGGCTTAAAGCAGGCCAGACTCAAAGTTTTATAGAGAGTGAGTAATTTTGGATTCTCACCTGAAAAAGGCATCATTGCCCCAGTATGATGGTTTACTGGTTTGCACATGAGAAGAAATACAGAGGCTAACATAAAGCTGCTTTGGGTTAAGATTTAGCCCGAGAACAAAGCTTGGTAAAATTGTTGAGTTTTGGAAAAAAAAAATTATATCTCGTTGAAAACTTTGATTTTTCATTTTTTTTATTTTTTTATTTCCTTTTTTCACTTTTTTTTTTGTTTATTTTTGTTTTGTTTCCTCCAAGTGACTTACTATGATTGGTTTATGATTCTTGCTAAGGTCTCCATTAACAAGAATTATAAGAGTAGACCATATAAAAAATTATCATTGAAAATCTCAAATCATGTAATTTTTTATTGAGAGCATTTTAAAAAAAAACTATTTTTTTCCACTAATGATATGATATAAGTGATGCATGAGTGAATGTATGACTTTGAATTTTTTTTTAAAAAAAGAAAAATAGCTCAATTTCCACACACTCACATTCTTTTTTACAAGTACTTAGCTAAATCATGGGTGACTAAAGCTTCATTGCCGTTTTAACACTAGGAAGCAATCTCAAAGTTGACTTCAAAGAAGAAATAAACTTTATTGATAATGCAAAACAATAGGTCAATATTGATTTTAATAAACTTGTACACTTATGATTCTAGTGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGCCATCCCGCCCTCATTAGCACTTGCACTTTATGCTTCAGTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAACGAACATGCGGATCGTACCACTTTGGATAAGGTGGTTGTAATGGTTCTACGGGTACGGGAGCTAATAGATTACCTTGAAATAATTGGGATAACAACTCGGTATAGGATATTGGGATCGAATAAAAACTCTCTCGCTTTAGTTGTCTCCGACTACTATGATTGTCAGGTAATGTTTGTGGATCATTCTGCAGAGTCAATGAGTTTATGGGTACCGTAG

mRNA sequence

ATGCACTACCGGGGAGGAGATCGTCGGAGTGCCAGCGGGCTTGGAAGAAGCTGTGAAGAAGAAGGTTGTTGCTGCTGTCGTTCGCGTCGTTCCCTTGCGTCGTCGGAGGTCGTGGGTATGCAAGAGAAAAGTGGTGATGGTGGGATAAGAGAGATGGAGAGAAGAAGATATGGTGATGAGATAATGTATGATATAGATGGATTCAGCTTGACACTAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCAAATGATAAAATGCGACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAATGATAAAATGCAAAGGACCTGGCTTTAACAATAGGCTTCGACCTCGACTTGGATCAGGTTCGATTCAACCAAATGATAATGCAATCGACCTGGCTTTAACAACAGTCTTCGACCTCGACTTGGATCGGATTCGATTTAACCAAATGATAAAAGGCGACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATTGAGGTCTCTGAGAGGATTCCTGATAAGGCCTCAACGGCCATTTAAGGTAAGCTTGAATCACGACATCCTATCGTGGAGTTTGTCAGAATATGAGGCTAAGCGAGACACATCTAGGTCAATTCAAACAAGTGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGCCATCCCGCCCTCATTAGCACTTGCACTTTATGCTTCAGTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAACGAACATGCGGATCGTACCACTTTGGATAAGGTGGTTGTAATGGTTCTACGGGTACGGGAGCTAATAGATTACCTTGAAATAATTGGGATAACAACTCGGTATAGGATATTGGGATCGAATAAAAACTCTCTCGCTTTAGTTGTCTCCGACTACTATGATTGTCAGGTAATGTTTGTGGATCATTCTGCAGAGTCAATGAGTTTATGGGTACCGTAG

Coding sequence (CDS)

ATGCACTACCGGGGAGGAGATCGTCGGAGTGCCAGCGGGCTTGGAAGAAGCTGTGAAGAAGAAGGTTGTTGCTGCTGTCGTTCGCGTCGTTCCCTTGCGTCGTCGGAGGTCGTGGGTATGCAAGAGAAAAGTGGTGATGGTGGGATAAGAGAGATGGAGAGAAGAAGATATGGTGATGAGATAATGTATGATATAGATGGATTCAGCTTGACACTAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCAAATGATAAAATGCGACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAATGATAAAATGCAAAGGACCTGGCTTTAACAATAGGCTTCGACCTCGACTTGGATCAGGTTCGATTCAACCAAATGATAATGCAATCGACCTGGCTTTAACAACAGTCTTCGACCTCGACTTGGATCGGATTCGATTTAACCAAATGATAAAAGGCGACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATTGAGGTCTCTGAGAGGATTCCTGATAAGGCCTCAACGGCCATTTAAGGTAAGCTTGAATCACGACATCCTATCGTGGAGTTTGTCAGAATATGAGGCTAAGCGAGACACATCTAGGTCAATTCAAACAAGTGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAGCCATCCCGCCCTCATTAGCACTTGCACTTTATGCTTCAGTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAACGAACATGCGGATCGTACCACTTTGGATAAGGTGGTTGTAATGGTTCTACGGGTACGGGAGCTAATAGATTACCTTGAAATAATTGGGATAACAACTCGGTATAGGATATTGGGATCGAATAAAAACTCTCTCGCTTTAGTTGTCTCCGACTACTATGATTGTCAGGTAATGTTTGTGGATCATTCTGCAGAGTCAATGAGTTTATGGGTACCGTAG

Protein sequence

MHYRGGDRRSASGLGRSCEEEGCCCCRSRRSLASSEVVGMQEKSGDGGIREMERRRYGDEIMYDIDGFSLTLGFDLDLDRVRFNQMIKCDGPGFNNRLRPRLGSGFDLDLDRVRFNRMIKCKGPGFNNRLRPRLGSGSIQPNDNAIDLALTTVFDLDLDRIRFNQMIKGDGPGFNNRLRPRLGLRSLRGFLIRPQRPFKVSLNHDILSWSLSEYEAKRDTSRSIQTSASCVDHLPLKTLAIPPSLALALYASVKYSSQLNDLQLLHGNHNEHADRTTLDKVVVMVLRVRELIDYLEIIGITTRYRILGSNKNSLALVVSDYYDCQVMFVDHSAESMSLWVP
Homology
[Close]
BLAST of Moc03g02490 vs. NCBI nr
Match: XP_022151686.1 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia])

HSP 1 Score: 146.7 bits (369), Expect = 3.5e-31
Identity = 79/116 (68.10%), Postives = 92/116 (79.31%), Query Frame = 0 

Query: 226 TSASCVDHLPLKTLAIPPSLALALYASVKYSSQLNDLQLLHGNHNEHADRTTLDKVVVMV 285
           +SASC+ HLPLKTLAI PSL LA+YA VKYSSQLNDLQLL GNH+  A RTT DKVV + 
Sbjct: 18  SSASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVAIA 77

Query: 286 LRVRELIDYLEIIGITTRYRILGSNKNSLALVVSDYYDCQVMFVDHSAESMSLWVP 342
           LRVRELIDYLEIIGITT+ RILGS+ +SLALV SDYYD +V     +  +M+  +P
Sbjct: 78  LRVRELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYRVFAAPFTLRAMNPALP 133

[Close]
BLAST of Moc03g02490 vs. NCBI nr
Match: XP_022144020.1 ((-)-germacrene D synthase-like [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 4.5e-18
Identity = 62/100 (62.00%), Postives = 68/100 (68.00%), Query Frame = 0 

Query: 226 TSASCVDHLPLKTLAIPPSLALALYASVKYSSQLNDLQLLHGNHNEHADRTTLDKVVVMV 285
           +SAS VDHLPLKTLAI PSL LALYA VKYSSQLNDLQLLHGNH+EHA         V+ 
Sbjct: 18  SSASGVDHLPLKTLAIMPSLELALYALVKYSSQLNDLQLLHGNHSEHA---------VVP 77

Query: 286 LRVRELIDYLEIIGITTRYRILGSNKNSLALVVSDYYDCQ 326
           L +                RILGSN++SL LVVSDYYDCQ
Sbjct: 78  LWI----------------RILGSNESSLTLVVSDYYDCQ 92

[Close]
BLAST of Moc03g02490 vs. ExPASy TrEMBL
Match: A0A6J1DFF2 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Momordica charantia OX=3673 GN=LOC111019602 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-31
Identity = 79/116 (68.10%), Postives = 92/116 (79.31%), Query Frame = 0 

Query: 226 TSASCVDHLPLKTLAIPPSLALALYASVKYSSQLNDLQLLHGNHNEHADRTTLDKVVVMV 285
           +SASC+ HLPLKTLAI PSL LA+YA VKYSSQLNDLQLL GNH+  A RTT DKVV + 
Sbjct: 18  SSASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVAIA 77

Query: 286 LRVRELIDYLEIIGITTRYRILGSNKNSLALVVSDYYDCQVMFVDHSAESMSLWVP 342
           LRVRELIDYLEIIGITT+ RILGS+ +SLALV SDYYD +V     +  +M+  +P
Sbjct: 78  LRVRELIDYLEIIGITTQCRILGSDGSSLALVASDYYDYRVFAAPFTLRAMNPALP 133

[Close]
BLAST of Moc03g02490 vs. ExPASy TrEMBL
Match: A0A6J1CQG9 ((-)-germacrene D synthase-like OS=Momordica charantia OX=3673 GN=LOC111013811 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.2e-18
Identity = 62/100 (62.00%), Postives = 68/100 (68.00%), Query Frame = 0 

Query: 226 TSASCVDHLPLKTLAIPPSLALALYASVKYSSQLNDLQLLHGNHNEHADRTTLDKVVVMV 285
           +SAS VDHLPLKTLAI PSL LALYA VKYSSQLNDLQLLHGNH+EHA         V+ 
Sbjct: 18  SSASGVDHLPLKTLAIMPSLELALYALVKYSSQLNDLQLLHGNHSEHA---------VVP 77

Query: 286 LRVRELIDYLEIIGITTRYRILGSNKNSLALVVSDYYDCQ 326
           L +                RILGSN++SL LVVSDYYDCQ
Sbjct: 78  LWI----------------RILGSNESSLTLVVSDYYDCQ 92

The following BLAST results are available for this feature:
BLAST of Moc03g02490 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151686.13.5e-3168.10U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia][more]
XP_022144020.14.5e-1862.00(-)-germacrene D synthase-like [Momordica charantia][more]
BLAST of Moc03g02490 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc03g02490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DFF21.7e-3168.10U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Momordica charantia OX... [more]
A0A6J1CQG92.2e-1862.00(-)-germacrene D synthase-like OS=Momordica charantia OX=3673 GN=LOC111013811 PE... [more]
BLAST of Moc03g02490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc03g02490.1Moc03g02490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding