Moc03g01490 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g01490
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr3: 1118356 .. 1119733 (-)
RNA-Seq Expression	Moc03g01490
Synteny	Moc03g01490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAACAGGCCATAGCGATCATCAGGTTGTACTTGTCAATGAATGTGGCAAGTCAGAAAACAGCAATGAGGTTGATAAAAGCGCTGACGGACAGATATGAAAAACCTTCTGCCAATAGCAAGATGTATCTCATCACGAGATATTTTAACATTCACATGGAGGAAGGCACGTCGGTGAACTCCCACATTAATGAGGTCACTCAACTGATGAACTAGTCGGAGTCGATGGAGATCACCTTTTCAGAGGAGGTGAAGTCTATAAAGTTGTTATCTTCTTTGCTTGACAGTTGGGAAACTATAAATACGATGGTGTTGAATTCGTAGGGAGACAAGAGTCTGAAATTTTCCGATATCTATGACGCTGCAATTGCTGAAGAGATTCGCAGGAAAGGAAGTGGGAAGAATTCCGCATCCACTTCTGGTGGTAAGAACCATTTAGAGTCAGTATTGATAATGCAAAGTAAAGGCAAATGGAAGATGAGATATGGGAAACAGCAAGGACATGGCCAGAGGAGTGGGAGCGGCGAGGTTGAATGTTTTTATTGCCATAAGAAGAGTCACTTCAAGAAACACTACATGAAACTTAAAGAGGATCAAGAAAATGAGGACACTCTAAATTGTGTGCCAGCAGATGTGTTAGCTTGTATTGAGGGTAACACAATACCTGTAGACTAGTCATCAGAATGGGTAGTAGACAATGCAGCATCGGTGCATGTATCTTCAGACAGGAGTTGGTTCACATCACTCACTACAGGCAGTCATGCATGGTGAGAATAGGGAATGAGAGAATCTCCAAGATCAGAGGAATTGAGGATATTCGTCTGAGGGCTGACAGTGGGACTAAGTTAGTTTTGCACGGTGTTAGGTATGTACCTAGTTTCAAGATGAATTTGATATCAGTGGAGAAGCTGAATGACGCAGGCTACATAAGTGAGTTTTCAGAGAACAGATGGAAACTCATGAGGGGATCTGAGGTAGTGGTTGTTGGCCACAGAGAAGCTTCACAGTATACGTGTTGAGGTTTGGCTTAGCTAGAGGATCAGAGAGACAAGTTATGCACATGGCTGCAGATAGTTCAGGGGGAGACTTGAAAGAACTAGCAGCATTGACAATCGGGACAAATCAGAAGAATCTGCCATCAGTTCAAGTACAATAGCTGGGAAGTAGAGGAAAGGGAAAGGGGAACAACTCAATGAGGTGTTCAGCAGATTGTCAGTTTCGAGCACCAGTTGTCAGACGGATTAGCAAGCTGATGAAGTTGCCTAGGCGAAAGAGTACATCGAGAAAGACTACAGTTGGTGCTGAGGTCGAGAGTGAAGTCTCCAGGGTGGTAACAGACTTGGGTGGGAGTGCCAAGTCATCAGATGGAAATTAA

mRNA sequence

ATGGATGAACAGGCCATAGCGATCATCAGGTTGTACTTGTCAATGAATGTGGCAAGTCAGAAAACAGCAATGAGGTTGATAAAAGCGCTGACGGACAGATATGAAAAACCTTCTGCCAATAGCAAGATGTATCTCATCACGAGATATTTTAACATTCACATGGAGGAAGGCACGTCGGTGAACTCCCACATTAATGAGGGAGACAAGAGTCTGAAATTTTCCGATATCTATGACGCTGCAATTGCTGAAGAGATTCGCAGGAAAGGAAGTGGGAAGAATTCCGCATCCACTTCTGGTGCAGATTGTCAGTTTCGAGCACCAGTTGTCAGACGGATTAGCAAGCTGATGAAGTTGCCTAGGCGAAAGAGTACATCGAGAAAGACTACAGTTGGTGCTGAGGTCGAGAGTGAAGTCTCCAGGGTGGTAACAGACTTGGGTGGGAGTGCCAAGTCATCAGATGGAAATTAA

Coding sequence (CDS)

ATGGATGAACAGGCCATAGCGATCATCAGGTTGTACTTGTCAATGAATGTGGCAAGTCAGAAAACAGCAATGAGGTTGATAAAAGCGCTGACGGACAGATATGAAAAACCTTCTGCCAATAGCAAGATGTATCTCATCACGAGATATTTTAACATTCACATGGAGGAAGGCACGTCGGTGAACTCCCACATTAATGAGGGAGACAAGAGTCTGAAATTTTCCGATATCTATGACGCTGCAATTGCTGAAGAGATTCGCAGGAAAGGAAGTGGGAAGAATTCCGCATCCACTTCTGGTGCAGATTGTCAGTTTCGAGCACCAGTTGTCAGACGGATTAGCAAGCTGATGAAGTTGCCTAGGCGAAAGAGTACATCGAGAAAGACTACAGTTGGTGCTGAGGTCGAGAGTGAAGTCTCCAGGGTGGTAACAGACTTGGGTGGGAGTGCCAAGTCATCAGATGGAAATTAA

Protein sequence

MDEQAIAIIRLYLSMNVASQKTAMRLIKALTDRYEKPSANSKMYLITRYFNIHMEEGTSVNSHINEGDKSLKFSDIYDAAIAEEIRRKGSGKNSASTSGADCQFRAPVVRRISKLMKLPRRKSTSRKTTVGAEVESEVSRVVTDLGGSAKSSDGN

Homology

[Close]

BLAST of Moc03g01490 vs. NCBI nr
Match: KAE8686631.1 (Piezo-type mechanosensitive ion channel-like protein [Hibiscus syriacus])

HSP 1 Score: 85.1 bits (209), Expect = 5.8e-13
Identity = 56/144 (38.89%), Postives = 79/144 (54.86%), Query Frame = 0


Query: 1   MDEQAIAIIRLYLS----MNVASQKTAMRLIKALTDRYEKPSANSKMYLITRYFNIHMEE 60
           +D QA+ +IRL LS     N+A +KT   L+ AL+  YEKPSA++K++L+ R FN+ M E
Sbjct: 556 LDRQALGVIRLTLSRNVAFNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRRLFNLRMAE 615

Query: 61  GTSVNSHINE--------------GDKSLKFSDIYDAAIAEEIRRKGSGKNSASTSGADC 120
           G SV  H+NE              G+  LKF D+ D  ++EEIRR+ SG+ S S S    
Sbjct: 616 GASVAQHLNELNTITTQLTVSSSSGNSKLKFDDVRDLVLSEEIRRRESGEASTS-SALHT 675

Query: 121 QFRAPVVRRISKLMKLPRRKSTSR 127
           + R     R S   +   R+  SR
Sbjct: 676 ESRGRTSERNSNRGRSKSRRGKSR 698

[Close]

BLAST of Moc03g01490 vs. NCBI nr
Match: KAE8725120.1 (Polyadenylate-binding protein 7 [Hibiscus syriacus])

HSP 1 Score: 82.0 bits (201), Expect = 4.9e-12
Identity = 59/151 (39.07%), Postives = 81/151 (53.64%), Query Frame = 0


Query: 1   MDEQAIAIIRLYLS----MNVASQKTAMRLIKALTDRYEKPSANSKMYLITRYFNIHMEE 60
           +D +A+ +IRL LS     N+A +KT   L+ AL+  YEKPSA +K++L+ R FN+ M E
Sbjct: 188 LDRKALEVIRLTLSRNVAFNIAKEKTTAGLMAALSSMYEKPSALNKVHLMRRLFNLWMTE 247

Query: 61  GTSVNSHINE-------------------GDKSLKFSDIYDAAIAEEIRRKGSGKNSAST 120
           G SV  H+NE                   G+  LKF D+ D  ++EEIRR+ SG+ S S 
Sbjct: 248 GASVAQHLNELNTITTYWNATVTAVSSSSGNSKLKFDDVRDLVLSEEIRRRESGEASTS- 307

Query: 121 SGADCQFRAPVVRRIS--KLMKLPRRKSTSR 127
           S    Q R     R S   + K  RRKS +R
Sbjct: 308 SALHTQSRGRTSERNSNRSISKSRRRKSRTR 337

[Close]

BLAST of Moc03g01490 vs. NCBI nr
Match: RVW36426.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-11
Identity = 48/131 (36.64%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 1   MDEQAIAIIRLYLSM----NVASQKTAMRLIKALTDRYEKPSANSKMYLITRYFNIHMEE 60
           +D Q + +IRL LS     NV  +KT   L+KAL+D YEK SAN+K++L+ + FN+ M +
Sbjct: 55  LDRQVLGVIRLTLSRFVAHNVVKEKTTANLMKALSDMYEKSSANNKVHLMKKLFNLKMAK 114

Query: 61  GTSVNSHINE---------------------GDKSLKFSDIYDAAIAEEIRRKGSGKNSA 107
             S+  H+NE                     G + LK++DI D  +AEEIRR+ +G+ S 
Sbjct: 115 NASIAQHLNEFNTITNQLSWEAMRMAISNSTGKEKLKYNDIRDLILAEEIRRRDAGETSG 174

[Close]

BLAST of Moc03g01490 vs. NCBI nr
Match: KAE8730100.1 (hypothetical protein F3Y22_tig00003041pilonHSYRG00846 [Hibiscus syriacus])

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-11
Identity = 53/144 (36.81%), Postives = 78/144 (54.17%), Query Frame = 0


Query: 1   MDEQAIAIIRLYLS----MNVASQKTAMRLIKALTDRYEKPSANSKMYLITRYFNIHMEE 60
           +D QA  +IRL LS     N+A +KT   L+ AL+  YEKPSA++K++L+ R F++ M E
Sbjct: 54  LDRQAFGVIRLTLSRNVTFNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRRLFHLRMTE 113

Query: 61  GTSVNSHINE--------------GDKSLKFSDIYDAAIAEEIRRKGSGKNSASTSGADC 120
           G S+  H+NE              G+  LKF D+ D  ++EEIR++ SG+ S S S    
Sbjct: 114 GASMAQHLNELNTITTQLTFSSSSGNSKLKFDDVRDLVLSEEIRQRESGEASTS-SALHT 173

Query: 121 QFRAPVVRRISKLMKLPRRKSTSR 127
           + R     R S   +   R+  SR
Sbjct: 174 ESRGRTSERNSNHGRSKSRRGKSR 196

[Close]

BLAST of Moc03g01490 vs. NCBI nr
Match: KAE8699790.1 (putative glucose-6-phosphate 1-epimerase [Hibiscus syriacus])

HSP 1 Score: 78.6 bits (192), Expect = 5.4e-11
Identity = 54/149 (36.24%), Postives = 78/149 (52.35%), Query Frame = 0


Query: 1   MDEQAIAIIRLYLS----MNVASQKTAMRLIKALTDRYEKPSANSKMYLITRYFNIHMEE 60
           +D QA+ +IRL LS     N+A +KT   L+ AL+  Y+K SA++K++L+ R FN+ M E
Sbjct: 267 LDRQALGVIRLTLSRNVAFNIAKEKTTAGLMTALSSMYKKSSASNKVHLMRRLFNLRMTE 326

Query: 61  GTSVNSHINE-------------------GDKSLKFSDIYDAAIAEEIRRKGSGKNSAST 120
           G SV  H+NE                   G+  LKF D+ D  ++EEIRR+ SG+ S S 
Sbjct: 327 GVSVAQHLNELNTITTHWNAIVTAVSSSSGNNKLKFDDVRDLVLSEEIRRRESGEASTS- 386

Query: 121 SGADCQFRAPVVRRISKLMKLPRRKSTSR 127
           S    + R     R S   +   R+  SR
Sbjct: 387 SALHTESRGRTSERNSNRGRSKSRRGKSR 414

[Close]

BLAST of Moc03g01490 vs. ExPASy TrEMBL
Match: A0A6A2Z3T6 (Piezo-type mechanosensitive ion channel-like protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111053pilonHSYRG00085 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.8e-13
Identity = 56/144 (38.89%), Postives = 79/144 (54.86%), Query Frame = 0


Query: 1   MDEQAIAIIRLYLS----MNVASQKTAMRLIKALTDRYEKPSANSKMYLITRYFNIHMEE 60
           +D QA+ +IRL LS     N+A +KT   L+ AL+  YEKPSA++K++L+ R FN+ M E
Sbjct: 556 LDRQALGVIRLTLSRNVAFNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRRLFNLRMAE 615

Query: 61  GTSVNSHINE--------------GDKSLKFSDIYDAAIAEEIRRKGSGKNSASTSGADC 120
           G SV  H+NE              G+  LKF D+ D  ++EEIRR+ SG+ S S S    
Sbjct: 616 GASVAQHLNELNTITTQLTVSSSSGNSKLKFDDVRDLVLSEEIRRRESGEASTS-SALHT 675

Query: 121 QFRAPVVRRISKLMKLPRRKSTSR 127
           + R     R S   +   R+  SR
Sbjct: 676 ESRGRTSERNSNRGRSKSRRGKSR 698

[Close]

BLAST of Moc03g01490 vs. ExPASy TrEMBL
Match: A0A6A3C778 (Non-specific serine/threonine protein kinase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00009009pilonHSYRG00079 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.4e-12
Identity = 59/151 (39.07%), Postives = 81/151 (53.64%), Query Frame = 0


Query: 1   MDEQAIAIIRLYLS----MNVASQKTAMRLIKALTDRYEKPSANSKMYLITRYFNIHMEE 60
           +D +A+ +IRL LS     N+A +KT   L+ AL+  YEKPSA +K++L+ R FN+ M E
Sbjct: 188 LDRKALEVIRLTLSRNVAFNIAKEKTTAGLMAALSSMYEKPSALNKVHLMRRLFNLWMTE 247

Query: 61  GTSVNSHINE-------------------GDKSLKFSDIYDAAIAEEIRRKGSGKNSAST 120
           G SV  H+NE                   G+  LKF D+ D  ++EEIRR+ SG+ S S 
Sbjct: 248 GASVAQHLNELNTITTYWNATVTAVSSSSGNSKLKFDDVRDLVLSEEIRRRESGEASTS- 307

Query: 121 SGADCQFRAPVVRRIS--KLMKLPRRKSTSR 127
           S    Q R     R S   + K  RRKS +R
Sbjct: 308 SALHTQSRGRTSERNSNRSISKSRRRKSRTR 337

[Close]

BLAST of Moc03g01490 vs. ExPASy TrEMBL
Match: A0A438DLV5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1135 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 9.0e-12
Identity = 48/131 (36.64%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 1   MDEQAIAIIRLYLSM----NVASQKTAMRLIKALTDRYEKPSANSKMYLITRYFNIHMEE 60
           +D Q + +IRL LS     NV  +KT   L+KAL+D YEK SAN+K++L+ + FN+ M +
Sbjct: 55  LDRQVLGVIRLTLSRFVAHNVVKEKTTANLMKALSDMYEKSSANNKVHLMKKLFNLKMAK 114

Query: 61  GTSVNSHINE---------------------GDKSLKFSDIYDAAIAEEIRRKGSGKNSA 107
             S+  H+NE                     G + LK++DI D  +AEEIRR+ +G+ S 
Sbjct: 115 NASIAQHLNEFNTITNQLSWEAMRMAISNSTGKEKLKYNDIRDLILAEEIRRRDAGETSG 174

[Close]

BLAST of Moc03g01490 vs. ExPASy TrEMBL
Match: A0A2N9F2J7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13078 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 9.0e-12
Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 0


Query: 1   MDEQAIAIIRLYLSM----NVASQKTAMRLIKALTDRYEKPSANSKMYLITRYFNIHMEE 60
           +D Q + +IRL LS     NV  +KT  +L+ AL D YEKPSAN+K++L+ + FN+ M E
Sbjct: 55  LDRQVLGVIRLTLSRSVAHNVVKEKTIAKLMTALCDMYEKPSANNKVHLMKKLFNLKMAE 114

Query: 61  GTSVNSHINE------------GDKSLKFSDIYDAAIAEEIRRKGSGKNSASTSGADCQF 120
           GT++  H+N+            G   LK++ I D  + EE+RR+ +G+ S+S S  + + 
Sbjct: 115 GTAMAQHLNDWEAMRMAASNSAGKGKLKYNHIRDLILGEEVRRRDAGETSSSGSALNLET 174

Query: 121 RAPVVRRISKLMKLPRRKSTSRK 128
           R        K     R +S SRK
Sbjct: 175 RGR-----GKDRNYNRGRSKSRK 192

[Close]

BLAST of Moc03g01490 vs. ExPASy TrEMBL
Match: A0A6A3CL60 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00003041pilonHSYRG00846 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.5e-11
Identity = 53/144 (36.81%), Postives = 78/144 (54.17%), Query Frame = 0


Query: 1   MDEQAIAIIRLYLS----MNVASQKTAMRLIKALTDRYEKPSANSKMYLITRYFNIHMEE 60
           +D QA  +IRL LS     N+A +KT   L+ AL+  YEKPSA++K++L+ R F++ M E
Sbjct: 54  LDRQAFGVIRLTLSRNVTFNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRRLFHLRMTE 113

Query: 61  GTSVNSHINE--------------GDKSLKFSDIYDAAIAEEIRRKGSGKNSASTSGADC 120
           G S+  H+NE              G+  LKF D+ D  ++EEIR++ SG+ S S S    
Sbjct: 114 GASMAQHLNELNTITTQLTFSSSSGNSKLKFDDVRDLVLSEEIRQRESGEASTS-SALHT 173

Query: 121 QFRAPVVRRISKLMKLPRRKSTSR 127
           + R     R S   +   R+  SR
Sbjct: 174 ESRGRTSERNSNHGRSKSRRGKSR 196

The following BLAST results are available for this feature:

BLAST of Moc03g01490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8686631.1	5.8e-13	38.89	Piezo-type mechanosensitive ion channel-like protein [Hibiscus syriacus]	[more]
KAE8725120.1	4.9e-12	39.07	Polyadenylate-binding protein 7 [Hibiscus syriacus]	[more]
RVW36426.1	1.9e-11	36.64	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
KAE8730100.1	3.2e-11	36.81	hypothetical protein F3Y22_tig00003041pilonHSYRG00846 [Hibiscus syriacus]	[more]
KAE8699790.1	5.4e-11	36.24	putative glucose-6-phosphate 1-epimerase [Hibiscus syriacus]	[more]

BLAST of Moc03g01490 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc03g01490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A2Z3T6	2.8e-13	38.89	Piezo-type mechanosensitive ion channel-like protein OS=Hibiscus syriacus OX=106...	[more]
A0A6A3C778	2.4e-12	39.07	Non-specific serine/threonine protein kinase OS=Hibiscus syriacus OX=106335 GN=F...	[more]
A0A438DLV5	9.0e-12	36.64	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A2N9F2J7	9.0e-12	36.36	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13078 PE=4 SV=1	[more]
A0A6A3CL60	1.5e-11	36.81	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00003041pilon...	[more]

BLAST of Moc03g01490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 3..66 e-value: 1.6E-9 score: 37.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..137
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 2..66
None	No IPR available	PANTHER	PTHR34676:SF1	ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATED	coord: 2..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g01490.1	Moc03g01490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0097159	organic cyclic compound binding