Moc03g01420 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g01420
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr3: 1075108 .. 1079018 (-)
RNA-Seq Expression	Moc03g01420
Synteny	Moc03g01420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAATCTGGTTAGTAAGTTACTCGTTCGTGGGTGTTGCACCGCAGATATTGTCGTGGGGTGTTGGGCCGCAAATCTGGCCGAGGAGGTTGTCGCATATCTAATCGAGTTCGTGTCTGTTCGTGGGTGTTGCACTGCTATTGAGGTAACTGCAGATCTTGTCAAATTCCTGGCTGTTCGAGTAAGGGGTGGCTGGTTTTGGTGGGAGAGAAAGAGAGAGATTAAGGTTTAAATAAATGACAGGGAGAGGGAGAGATTGTGATTTTTGAGAGATAAAAGAGATTTGAAATGAAACCGATTTTTAAATTTTTCTTTAAAAATTTATTAAATATATATTTAAGATAGTACACTTGTAAAATTTCAGGGGGGTTTTGTTGGCCCATTTTAAGACAAAAATGTATAAAATATTAAACATGAATCCATTCATGTAATATGAATCTTCTTCTTCGTATAGTCTAGTAGTATACTTAATTTTAGTGGGTCGAGATTTGAATGATTTTGACTTAATCTTTGGACTTGACTCATTCGGGTCATAGGCTCAATCCTCAAGATTAAAACTTATTCAAATTTAGTTCTAAGTCAATAATTAATCTACTGTAATGATCTTAGGTTAATTTGGGACTTGAGTCAAATTACAATTTCGAACTATTTAACCTTGGGTTCAATTTTCACATGACTCAATTTGACCAAACTAACCCAATCAAATGTTCCCGAGAAAGACAAGTGGCAATATTTGGATTTAATTTTTCACTTATTTTCATTTAATAACATAATTTTGTCATGGACTAAAATTTGTGCTTCTACTAGAAGTTGAAAATTTTAAATATGTAATTAATTTGGGTTTATATTAGTTTTTTAGTCTATGAATTTTTATTATTTTATATTTTGCCCTAAACTCTTGAAATTTTCATTTTGGTTTCAATGATAATAATAAGGTTGTGGATCTTGCAAATAATTCAACACATATATCACTATAAAAATAGTAGAGATTTAGTTTTTTCAACATATGATGTGATCTTCTTTATTATTCATGACATATGTACATTACAATAATAGGGACTAACTGTGAAGTTTTCAAAAAAATTTTAGGACTAAAATTGAGATTTCAAAATTTTGAAGGATTAAAATAGCAAGTGAAAAAAAAATCAGAAACCAAAATAAAATTTTCAAAAATTTAAGAAGCAAAACTGAACTGAGTGGAGAATCTGGCCCTCGCCTTAGTCACCTCGGCCCGAAGACTTAGGCCGTACTTCCAAGCGCACACCGTCGTAGTACTCACCAACTTGCCCCTGAAAAACATCTTTCATAAGCCAGAAACATCAGGGCGTCTGATGAAGTGGGCAATGAAGTTGAGCGAGTACGACATCCATTTCGAGCCCAGAATTGCGTTGAAGGAGCAAGCAGTGGCAAACTTCATCGTGGAGCTCACCCCACCATCTCAGTCGGCCGAATTCGACCTCCCGTGGACAATCTACGTTGACGGATCTTCCAATGAGAGAGGGTGCAGAGCAGGAGTCCTGCGGTTCAACTTTCAGACTTCAAATAATGAGGCTGAGTACGAAGCGCTTCTGGCAGGCCTACGCATTGCCAAAGGACTGGGGGCCATCCACATCAAGGACTCCAAGATGGAAAAATATCTAGGCAAAGTCAAATCGCACCTCGTCCAGTTTGAGTCCTACGAGGTGAATCAAGTTCCAAGATCAGAAAATTCCAACGCAGATGCCTTAGCCAAATTGGCATCGGCATTTGAGACTGACCTGGCCAGATCGGTCCCGATCGAGATCCTGGACAATCCTTCAATCTTGGAGCCAGATTTGATGGAAGTTGACACTCCAGCACCCTCGTGGATGGATCCAATCGTGGAGTTCATCAAAGGAAATCCACCGCAAGATTCAAAAGAGCACAAGAAAATGGCGCGAAAAGTAGCTCAGTTCATACTCCGAGATGGAGCATTGTACCGACGTGGCTTCTCCCTGCCTTTGCTTAAGTGTGTAACTCCTGAAGAAGGTAATTACATCCTTAGGAAAATTCATGAAGGGGTGTATGGAAACCACTCTGGCGCCAGGTCGTTGTCGGCCAAGGTGGTTCGACAAGGGTACTATTGGCCCACCGTCAAGCAGGATGCAAAGCAGTTTGTGAAAACCTGCGACAACTGCCAGCGCTTTGCAAATATTATCCATCAGCCTCTCGAGCTACTCACCCCCATCTCGGCTCCACGACCATTCGCACAATGGGGAGTTGACATCATAGGTCCTTTTCCTCTAGGCAAAGGACAAACCAAGTTCGTGTTGTCGCTGTGGACTACTTCACCAAGTGGGCCGAGGCCGAGGCACTCACCCACATCACGGAGTCTAGAGTCACGTCTTTTATATGGACAAACATTGTATGCCGTTTCGATATACCAAACTCCATTGTGACGGACAACGGAAAGCAATTCGACAATGCAAAGTTCAAGGACTTTTGCAGGAAGCTGGGCATAAGCCATCTCAGTTCGTCCCCTGTGCATCCAAAAGCAAATGGGCAGGTTGAAGCGATAAATAAAATTATAAAGCGAGGACTCAAGTTGAGATTGGACTCCAGAAAGGGAAGATGGGCCGAGGAGCTACCCGAAGTATTATGGTCATATCAGACCACCCCAAGAGGGTCAACTGGCGAAACTCCGTTCTCACTGGCTTTTGGCTCTGAAGCTGTTGTTCCAGTTGAGATCGGCATGCCGACCGACAGGGTGGAGCAGTACGAACCGCTCAGAAACGAGGCCGAACTGCTCCTTAACCTCGACCTACTAGAAGAAAAGAGGGAAATGGCTCAGCTACAATTAGCAGAGTATCAAAACAGAATGGCCAGACATTACAATGCCCGAGTTCGACCTCGAAGCTTTCAAGTTGGACATTTGGTCCTCGAGAAGATTCAGAGTCATGTGGGCACCCTAGACCCAAGTTGGGAGGGACCGTTCGAGGTCAAAGGCATAGTCCGACCTGGAACGTACATGCTGGTCGACCTGGAAGGGAACGTGCTTGCGCATCCATGGAACGCAGAGCACTTAAAGCGTTACTACCCTTGAAATGTCAAAATGGTCATGAAATGGACTTGTAAAAATTTTCAAGGGAAGGAAGCTTTTAATAAAACGGAGGAATATTTAATTTCATTACTCCGAGTTCGATCAAAAATTAAATGGGGGTCACGGACTCCCATAAGACTTAAAACCTTAACTCAATCCTTTGAATGCTTAAGTTAAAGGTGCGATGTGGAAGGTCCAAGAAATTCAATCCTCTAAACCCACGGGTTCGAGGTGCGATGTGAATATTAATTATGGACTCAAAATTCAACCCTTTGAACATTTAAGTTAATAGTGCGATGTAGAAAGTTCAAATGGTTTAATGTTATCTTTTGGACTTCCGAGTTCGAGGAGAAATATCAAAGACCAGTGAAGGAAACTCTCAAATTCAAACCTTAAAAACAAACATAAGTAAAAAGGGCGATGTGGAAAGAGTTCCTCTCAAACTCAATCCTTTAAAGCTTACGAGTTAGAGGTATGAGATGAAATTATTCATATATGAGTTCAAATTTACAAAAGCGAGTTCAAAAGCTTAAGGAAAAAGCAATAAAAGAACAGTCAGAGTTCGATGTACAGAAGTGGAGAAATGAAGATTCCATTGATTAAAGGATAGAGCCAAAGCTTGTATACCTTGCAGCTCTGCCCAAAAACTTACACAAAAAATTCAAAAAAAAAAAACGAAATAGACAAGAAGCCTCAGCCACTCCCGAGGTGAGAAGACAGCTCGCCTTGGGAGCCAAGAAGGTTCATCTCCTGAGATCCGCCCTACTGTGAAGGGACGTCTTCTTGCTTGGTGCCGACATCAATTGGCTCCTGACTTGGAGCGTCTTCATCTTCCATGTCGGAGTAGTTAG

mRNA sequence

ATGTCGAATCTGGTTAGTAAGTTACTCGTTCGTGGGTGTTGCACCGCAGATATTGTCGTGGGGTGTTGGGCCGCAAATCTGGCCGAGGAGGTTGTCGCATATCTAATCGAGTTCGTGTCTGTTCGTGGGTGTTGCACTGCTATTGAGGTAACTGCAGATCTTGTCAAATTCCTGGCTGTTCGAGACTCCAAGATGGAAAAATATCTAGGCAAAGTCAAATCGCACCTCGTCCAGTTTGAGTCCTACGAGGTGAATCAAGTTCCAAGATCAGAAAATTCCAACGCAGATGCCTTAGCCAAATTGGCATCGGCATTTGAGACTGACCTGGCCAGATCGGTCCCGATCGAGATCCTGGACAATCCTTCAATCTTGGAGCCAGATTTGATGGAAGTTGACACTCCAGCACCCTCGTGGATGGATCCAATCGTGGAGTTCATCAAAGGAAATCCACCGCAAGATTCAAAAGAGCACAAGAAAATGGCGCGAAAAGTAGCTCAGTTCATACTCCGAGATGGAGCATTGTACCGACGTGGCTTCTCCCTGCCTTTGCTTAAGTGTGTAACTCCTGAAGAAGCTCGCCTTGGGAGCCAAGAAGGTTCATCTCCTGAGATCCGCCCTACTGTGAAGGGACGTCTTCTTGCTTGGTGCCGACATCAATTGGCTCCTGACTTGGAGCGTCTTCATCTTCCATGTCGGAGTAGTTAG

Coding sequence (CDS)

ATGTCGAATCTGGTTAGTAAGTTACTCGTTCGTGGGTGTTGCACCGCAGATATTGTCGTGGGGTGTTGGGCCGCAAATCTGGCCGAGGAGGTTGTCGCATATCTAATCGAGTTCGTGTCTGTTCGTGGGTGTTGCACTGCTATTGAGGTAACTGCAGATCTTGTCAAATTCCTGGCTGTTCGAGACTCCAAGATGGAAAAATATCTAGGCAAAGTCAAATCGCACCTCGTCCAGTTTGAGTCCTACGAGGTGAATCAAGTTCCAAGATCAGAAAATTCCAACGCAGATGCCTTAGCCAAATTGGCATCGGCATTTGAGACTGACCTGGCCAGATCGGTCCCGATCGAGATCCTGGACAATCCTTCAATCTTGGAGCCAGATTTGATGGAAGTTGACACTCCAGCACCCTCGTGGATGGATCCAATCGTGGAGTTCATCAAAGGAAATCCACCGCAAGATTCAAAAGAGCACAAGAAAATGGCGCGAAAAGTAGCTCAGTTCATACTCCGAGATGGAGCATTGTACCGACGTGGCTTCTCCCTGCCTTTGCTTAAGTGTGTAACTCCTGAAGAAGCTCGCCTTGGGAGCCAAGAAGGTTCATCTCCTGAGATCCGCCCTACTGTGAAGGGACGTCTTCTTGCTTGGTGCCGACATCAATTGGCTCCTGACTTGGAGCGTCTTCATCTTCCATGTCGGAGTAGTTAG

Protein sequence

MSNLVSKLLVRGCCTADIVVGCWAANLAEEVVAYLIEFVSVRGCCTAIEVTADLVKFLAVRDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDNPSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKMARKVAQFILRDGALYRRGFSLPLLKCVTPEEARLGSQEGSSPEIRPTVKGRLLAWCRHQLAPDLERLHLPCRSS

Homology

[Close]

BLAST of Moc03g01420 vs. NCBI nr
Match: XP_022149378.1 (uncharacterized protein LOC111017809 [Momordica charantia])

HSP 1 Score: 233.8 bits (595), Expect = 1.5e-57
Identity = 115/131 (87.79%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 61  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDN 120
           +DS+MEKYL KV+SHL Q ++YEVNQVPRSENSNADALAKLASA+ETDLARSVP+EILDN
Sbjct: 194 KDSRMEKYLTKVRSHLAQLKTYEVNQVPRSENSNADALAKLASAYETDLARSVPVEILDN 253

Query: 121 PSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKMARKVAQFILRDGALYRRGFS 180
           PSILEPDLMEVDTP PSWMD IVEFIKGN PQD KEHKKMARKVAQFILRDGALYR+GFS
Sbjct: 254 PSILEPDLMEVDTPTPSWMDLIVEFIKGNLPQDPKEHKKMARKVAQFILRDGALYRQGFS 313

Query: 181 LPLLKCVTPEE 192
           LPLLKCVTPE+
Sbjct: 314 LPLLKCVTPED 324

[Close]

BLAST of Moc03g01420 vs. NCBI nr
Match: XP_022155184.1 (uncharacterized protein LOC111022318 [Momordica charantia])

HSP 1 Score: 230.7 bits (587), Expect = 1.3e-56
Identity = 113/131 (86.26%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 61  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDN 120
           +D +MEKYL KV+SHLVQFE+YEVNQVPRSEN NADALA+LA A+E DLARSVP+EILD 
Sbjct: 123 KDPRMEKYLSKVRSHLVQFETYEVNQVPRSENFNADALAELALAYEIDLARSVPVEILDT 182

Query: 121 PSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKMARKVAQFILRDGALYRRGFS 180
           PSILE D+MEVDTPAPSWMDPIVEFIKGNPPQDSKE KKMARKV +FILRDGALYRRGFS
Sbjct: 183 PSILEQDVMEVDTPAPSWMDPIVEFIKGNPPQDSKEQKKMARKVVRFILRDGALYRRGFS 242

Query: 181 LPLLKCVTPEE 192
           LPLLKCVTPEE
Sbjct: 243 LPLLKCVTPEE 253

[Close]

BLAST of Moc03g01420 vs. NCBI nr
Match: XP_022157610.1 (uncharacterized protein LOC111024267 [Momordica charantia])

HSP 1 Score: 230.3 bits (586), Expect = 1.7e-56
Identity = 108/131 (82.44%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 61  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDN 120
           +DS+MEKYL KV+SHL QF++YEVNQVPR ENSN DALAKLASA+ETDLARS+P+EILDN
Sbjct: 137 KDSRMEKYLSKVRSHLAQFKTYEVNQVPRLENSNVDALAKLASAYETDLARSIPVEILDN 196

Query: 121 PSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKMARKVAQFILRDGALYRRGFS 180
           PSILEPD+M+VD  AP WMDP+VEFIKGNPPQDSKEHKKMAR+ AQF+LRDGALY RGFS
Sbjct: 197 PSILEPDIMDVDATAPMWMDPVVEFIKGNPPQDSKEHKKMARRAAQFVLRDGALYSRGFS 256

Query: 181 LPLLKCVTPEE 192
           LPLLKC TPEE
Sbjct: 257 LPLLKCATPEE 267

[Close]

BLAST of Moc03g01420 vs. NCBI nr
Match: XP_022151715.1 (uncharacterized protein LOC111019628 [Momordica charantia])

HSP 1 Score: 229.2 bits (583), Expect = 3.7e-56
Identity = 108/131 (82.44%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 61  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDN 120
           +D +MEKYL +V+SHL QFE+YEV+QVPRSENSNADALAKLASA+ETDLARSVP+EILDN
Sbjct: 182 KDPRMEKYLSRVRSHLAQFETYEVSQVPRSENSNADALAKLASAYETDLARSVPVEILDN 241

Query: 121 PSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKMARKVAQFILRDGALYRRGFS 180
           PSIL+PD+ME+D P+PSWMDPIVEFI+GNPPQ+ KE KKMARK A+F+LRDGALYRRGFS
Sbjct: 242 PSILDPDVMEIDIPSPSWMDPIVEFIQGNPPQELKEQKKMARKAARFVLRDGALYRRGFS 301

Query: 181 LPLLKCVTPEE 192
           LPLLKCVTPEE
Sbjct: 302 LPLLKCVTPEE 312

[Close]

BLAST of Moc03g01420 vs. NCBI nr
Match: XP_022144032.1 (uncharacterized protein LOC111013824 [Momordica charantia])

HSP 1 Score: 229.2 bits (583), Expect = 3.7e-56
Identity = 112/131 (85.50%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 61  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDN 120
           +DS+M+KYL KV+S+LVQFE+YEVNQVPRSENSN DALAKLASA+ETDLARSV + ILDN
Sbjct: 82  KDSRMKKYLSKVRSYLVQFETYEVNQVPRSENSNTDALAKLASAYETDLARSVLVVILDN 141

Query: 121 PSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKMARKVAQFILRDGALYRRGFS 180
           PSILEPDLMEV+TP PSWMDPIVEFIK NPPQDSK HKKM+RKVA+FILRDGALYRRGFS
Sbjct: 142 PSILEPDLMEVETPEPSWMDPIVEFIKRNPPQDSKAHKKMSRKVARFILRDGALYRRGFS 201

Query: 181 LPLLKCVTPEE 192
           LPLLKCVTPE+
Sbjct: 202 LPLLKCVTPED 212

[Close]

BLAST of Moc03g01420 vs. ExPASy TrEMBL
Match: A0A6J1D6M1 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111017809 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 7.3e-58
Identity = 115/131 (87.79%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 61  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDN 120
           +DS+MEKYL KV+SHL Q ++YEVNQVPRSENSNADALAKLASA+ETDLARSVP+EILDN
Sbjct: 194 KDSRMEKYLTKVRSHLAQLKTYEVNQVPRSENSNADALAKLASAYETDLARSVPVEILDN 253

Query: 121 PSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKMARKVAQFILRDGALYRRGFS 180
           PSILEPDLMEVDTP PSWMD IVEFIKGN PQD KEHKKMARKVAQFILRDGALYR+GFS
Sbjct: 254 PSILEPDLMEVDTPTPSWMDLIVEFIKGNLPQDPKEHKKMARKVAQFILRDGALYRQGFS 313

Query: 181 LPLLKCVTPEE 192
           LPLLKCVTPE+
Sbjct: 314 LPLLKCVTPED 324

[Close]

BLAST of Moc03g01420 vs. ExPASy TrEMBL
Match: A0A6J1DPI3 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111022318 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 6.2e-57
Identity = 113/131 (86.26%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 61  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDN 120
           +D +MEKYL KV+SHLVQFE+YEVNQVPRSEN NADALA+LA A+E DLARSVP+EILD 
Sbjct: 123 KDPRMEKYLSKVRSHLVQFETYEVNQVPRSENFNADALAELALAYEIDLARSVPVEILDT 182

Query: 121 PSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKMARKVAQFILRDGALYRRGFS 180
           PSILE D+MEVDTPAPSWMDPIVEFIKGNPPQDSKE KKMARKV +FILRDGALYRRGFS
Sbjct: 183 PSILEQDVMEVDTPAPSWMDPIVEFIKGNPPQDSKEQKKMARKVVRFILRDGALYRRGFS 242

Query: 181 LPLLKCVTPEE 192
           LPLLKCVTPEE
Sbjct: 243 LPLLKCVTPEE 253

[Close]

BLAST of Moc03g01420 vs. ExPASy TrEMBL
Match: A0A6J1DTK4 (uncharacterized protein LOC111024267 OS=Momordica charantia OX=3673 GN=LOC111024267 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 8.1e-57
Identity = 108/131 (82.44%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 61  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDN 120
           +DS+MEKYL KV+SHL QF++YEVNQVPR ENSN DALAKLASA+ETDLARS+P+EILDN
Sbjct: 137 KDSRMEKYLSKVRSHLAQFKTYEVNQVPRLENSNVDALAKLASAYETDLARSIPVEILDN 196

Query: 121 PSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKMARKVAQFILRDGALYRRGFS 180
           PSILEPD+M+VD  AP WMDP+VEFIKGNPPQDSKEHKKMAR+ AQF+LRDGALY RGFS
Sbjct: 197 PSILEPDIMDVDATAPMWMDPVVEFIKGNPPQDSKEHKKMARRAAQFVLRDGALYSRGFS 256

Query: 181 LPLLKCVTPEE 192
           LPLLKC TPEE
Sbjct: 257 LPLLKCATPEE 267

[Close]

BLAST of Moc03g01420 vs. ExPASy TrEMBL
Match: A0A6J1DBZ0 (uncharacterized protein LOC111019628 OS=Momordica charantia OX=3673 GN=LOC111019628 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.8e-56
Identity = 108/131 (82.44%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 61  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDN 120
           +D +MEKYL +V+SHL QFE+YEV+QVPRSENSNADALAKLASA+ETDLARSVP+EILDN
Sbjct: 182 KDPRMEKYLSRVRSHLAQFETYEVSQVPRSENSNADALAKLASAYETDLARSVPVEILDN 241

Query: 121 PSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKMARKVAQFILRDGALYRRGFS 180
           PSIL+PD+ME+D P+PSWMDPIVEFI+GNPPQ+ KE KKMARK A+F+LRDGALYRRGFS
Sbjct: 242 PSILDPDVMEIDIPSPSWMDPIVEFIQGNPPQELKEQKKMARKAARFVLRDGALYRRGFS 301

Query: 181 LPLLKCVTPEE 192
           LPLLKCVTPEE
Sbjct: 302 LPLLKCVTPEE 312

[Close]

BLAST of Moc03g01420 vs. ExPASy TrEMBL
Match: A0A6J1CSJ1 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013824 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.8e-56
Identity = 112/131 (85.50%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 61  RDSKMEKYLGKVKSHLVQFESYEVNQVPRSENSNADALAKLASAFETDLARSVPIEILDN 120
           +DS+M+KYL KV+S+LVQFE+YEVNQVPRSENSN DALAKLASA+ETDLARSV + ILDN
Sbjct: 82  KDSRMKKYLSKVRSYLVQFETYEVNQVPRSENSNTDALAKLASAYETDLARSVLVVILDN 141

Query: 121 PSILEPDLMEVDTPAPSWMDPIVEFIKGNPPQDSKEHKKMARKVAQFILRDGALYRRGFS 180
           PSILEPDLMEV+TP PSWMDPIVEFIK NPPQDSK HKKM+RKVA+FILRDGALYRRGFS
Sbjct: 142 PSILEPDLMEVETPEPSWMDPIVEFIKRNPPQDSKAHKKMSRKVARFILRDGALYRRGFS 201

Query: 181 LPLLKCVTPEE 192
           LPLLKCVTPE+
Sbjct: 202 LPLLKCVTPED 212

The following BLAST results are available for this feature:

BLAST of Moc03g01420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149378.1	1.5e-57	87.79	uncharacterized protein LOC111017809 [Momordica charantia]	[more]
XP_022155184.1	1.3e-56	86.26	uncharacterized protein LOC111022318 [Momordica charantia]	[more]
XP_022157610.1	1.7e-56	82.44	uncharacterized protein LOC111024267 [Momordica charantia]	[more]
XP_022151715.1	3.7e-56	82.44	uncharacterized protein LOC111019628 [Momordica charantia]	[more]
XP_022144032.1	3.7e-56	85.50	uncharacterized protein LOC111013824 [Momordica charantia]	[more]

BLAST of Moc03g01420 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc03g01420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D6M1	7.3e-58	87.79	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111017809 PE=4 SV=1	[more]
A0A6J1DPI3	6.2e-57	86.26	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111022318 PE=4 SV=1	[more]
A0A6J1DTK4	8.1e-57	82.44	uncharacterized protein LOC111024267 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DBZ0	1.8e-56	82.44	uncharacterized protein LOC111019628 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1CSJ1	1.8e-56	85.50	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013824 PE=4 SV=1	[more]

BLAST of Moc03g01420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 231..234
None	No IPR available	PANTHER	PTHR46387	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 61..193
None	No IPR available	PANTHER	PTHR46387:SF6	14.7 KDA RIBONUCLEASE H-LIKE PROTEIN	coord: 61..193
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 59..102 e-value: 1.1E-4 score: 22.0
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 37..114 e-value: 6.1E-6 score: 28.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g01420.1	Moc03g01420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity