Moc03g00880 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g00880
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr3: 621131 .. 621967 (-)
RNA-Seq Expression	Moc03g00880
Synteny	Moc03g00880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCCTCAAATCTTCAACTGGGTAAAAAGATCTGAAGGGAAGAGCTCCAACTCGACTAAGACTGCCACGATTAAGGCCCTTACTCAGACGGTCGCACCTGAGACCGTGGTCTTGGATGATGACATCATTGCTCCCTTTGCCCCCAAGGTCAGACCTTCTCTTAAAAAGGAGATAAAGGACAAGAAGGACAAGAAGTTGGAGAAGAGGACGCACGAAGTTGTCCCCTCTGATAAGGTGGGGGAACATTTTCCAAGAGAGCCCAAATCTAGGCCCATCAAGACTTCAAGATGCACTTCCAATCCAACACGGTCAGCGATGGAATCAGGTCGGCGGTTGAAGAGGTCGCGGAGGGTTGTTTTTCAAGGGCAATTCAACAAGAGCGCCTTGCTATGATGCCTGCTGCTGGTAATTTCCAAAGGGCTATGGACGCTGCAGCTGACGTGAGACTTTTTTTATTATTATTGAACTGAGCTGATGCTATGTTTACTTGCCTTTGAACAGGTTATGTTGATGTTCTGCCAAACTGCAGCACAGACCAAGCTTGAGTTGCACTAGCGCGACGAGTTGTTGCGATGTGAAAATGAGTCTTGTATGGCTGCCTTACTGGAGGCGAAGGCGAGTAAAGATGAAGCTGTGCGTTTGAAGGCCGATTTGCGAGCTGCCAATAATACCATGGCTGAGATGAGTGACCAAGTAGCCAAATGCGAGGCTACCATGAAGGAGGTCATTGGGAGGCTTCACAACTATGAGTCCTTAGAAGCCCAAACCATCTCGCTTAAGCAAGACTTGGATGTTACTCGTGCTGAAAAGGAGGCTGTTGAGAAGGAGCTTTGA

mRNA sequence

ATGTTGCCTCAAATCTTCAACTGGGTAAAAAGATCTGAAGGGAAGAGCTCCAACTCGACTAAGACTGCCACGATTAAGGCCCTTACTCAGACGGTCGCACCTGAGACCGTGGTCTTGGATGATGACATCATTGCTCCCTTTGCCCCCAAGGTCAGACCTTCTCTTAAAAAGGAGATAAAGGACAAGAAGGACAAGAAGTTGGAGAAGAGGACGCACGAAGTTGTCCCCTCTGATAAGGTGGGGGAACATTTTCCAAGAGAGCCCAAATCTAGGCCCATCAAGACTTCAAGATGCACTTCCAATCCAACACGGTCAGCGATGGAATCAGGTTATGTTGATGCGAAGGCGAGTAAAGATGAAGCTGTGCGTTTGAAGGCCGATTTGCGAGCTGCCAATAATACCATGGCTGAGATGAGTGACCAAGTAGCCAAATGCGAGGCTACCATGAAGGAGGTCATTGGGAGGCTTCACAACTATGAGTCCTTAGAAGCCCAAACCATCTCGCTTAAGCAAGACTTGGATGTTACTCGTGCTGAAAAGGAGGCTGTTGAGAAGGAGCTTTGA

Coding sequence (CDS)

ATGTTGCCTCAAATCTTCAACTGGGTAAAAAGATCTGAAGGGAAGAGCTCCAACTCGACTAAGACTGCCACGATTAAGGCCCTTACTCAGACGGTCGCACCTGAGACCGTGGTCTTGGATGATGACATCATTGCTCCCTTTGCCCCCAAGGTCAGACCTTCTCTTAAAAAGGAGATAAAGGACAAGAAGGACAAGAAGTTGGAGAAGAGGACGCACGAAGTTGTCCCCTCTGATAAGGTGGGGGAACATTTTCCAAGAGAGCCCAAATCTAGGCCCATCAAGACTTCAAGATGCACTTCCAATCCAACACGGTCAGCGATGGAATCAGGTTATGTTGATGCGAAGGCGAGTAAAGATGAAGCTGTGCGTTTGAAGGCCGATTTGCGAGCTGCCAATAATACCATGGCTGAGATGAGTGACCAAGTAGCCAAATGCGAGGCTACCATGAAGGAGGTCATTGGGAGGCTTCACAACTATGAGTCCTTAGAAGCCCAAACCATCTCGCTTAAGCAAGACTTGGATGTTACTCGTGCTGAAAAGGAGGCTGTTGAGAAGGAGCTTTGA

Protein sequence

MLPQIFNWVKRSEGKSSNSTKTATIKALTQTVAPETVVLDDDIIAPFAPKVRPSLKKEIKDKKDKKLEKRTHEVVPSDKVGEHFPREPKSRPIKTSRCTSNPTRSAMESGYVDAKASKDEAVRLKADLRAANNTMAEMSDQVAKCEATMKEVIGRLHNYESLEAQTISLKQDLDVTRAEKEAVEKEL

Homology

[Close]

BLAST of Moc03g00880 vs. NCBI nr
Match: XP_022155848.1 (uncharacterized protein LOC111022872 [Momordica charantia] >XP_022155849.1 uncharacterized protein LOC111022872 [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 4.1e-13
Identity = 43/58 (74.14%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 129 RAANNTMAEMSDQVAKCEATMKEVIGRLHNYESLEAQTISLKQDLDVTRAEKEAVEKE 187
           +AAN+TM EM+DQ+AKC+ATMKEV  R+HN+E+LEA+TISLKQDLD  RAEKE VEKE
Sbjct: 24  QAANDTMTEMNDQMAKCKATMKEVTERIHNFEALEAKTISLKQDLDSARAEKEVVEKE 81

[Close]

BLAST of Moc03g00880 vs. ExPASy TrEMBL
Match: A0A6J1DRG7 (uncharacterized protein LOC111022872 OS=Momordica charantia OX=3673 GN=LOC111022872 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-13
Identity = 43/58 (74.14%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 129 RAANNTMAEMSDQVAKCEATMKEVIGRLHNYESLEAQTISLKQDLDVTRAEKEAVEKE 187
           +AAN+TM EM+DQ+AKC+ATMKEV  R+HN+E+LEA+TISLKQDLD  RAEKE VEKE
Sbjct: 24  QAANDTMTEMNDQMAKCKATMKEVTERIHNFEALEAKTISLKQDLDSARAEKEVVEKE 81

The following BLAST results are available for this feature:

BLAST of Moc03g00880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155848.1	4.1e-13	74.14	uncharacterized protein LOC111022872 [Momordica charantia] >XP_022155849.1 uncha...	[more]

BLAST of Moc03g00880 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc03g00880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRG7	2.0e-13	74.14	uncharacterized protein LOC111022872 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Moc03g00880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 159..187
None	No IPR available	COILS	Coil	Coil	coord: 114..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc03g00880.1	Moc03g00880.1	mRNA