Moc02g13240 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g13240
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Transcription initiation factor IIA subunit 2
Location	chr2: 9748549 .. 9749452 (-)
RNA-Seq Expression	Moc02g13240
Synteny	Moc02g13240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTCATTATGGGTCTAGTGAAGCTTAACGTGGAAAAATTTGACGAAATGATCAACTTAGACTTGTGGAAAGTGCAAGTCAAGGATGTGTTGATACAATCTAGGTTACACAAGACGTTGAAGGGAAGACCGAGTGGAGGTGGTTCTGAAAAGCTAAGCGGTGATGATGATCCAATGGAGTCAAGGGTGGTTCTAGTAGAGTTTTAAGAAGTTCAGCATGAGTGATGAAGATTGGTAGGAAATGGATTTGAGGGCTGCAAGTGCAAACGAGCAGGGTTAAGAATATTCTTGCGAATGTGCATGAAATTTCAATAGTCAAAGAACTATTGTACCTGAATGAGCAGTTCATATGTTGTGATGGAGGCAAGTACGAAAATTTTAGATAATTTGAGTAATCTCAATAGCATCATCTTTGAGCTGGAGGTGATCAAAGTGAAGATACGTCCATCTTGTCACTTCCACCTTCTTATGAACACATGAAACCAATCTTGATTCGGAATGATACTTTGAATTTTCTTGAGACTATTAGTAAACTGAAGGTCGAAGAGTGAAGGGCGTACTTCACATGAAGATTCAACACTAGTAGCTAACAATTGGAAGAAGAAGAAAACTTGATGTTAAAGAGTGAAGGGTTTTGACTATGTTTCTCTCATCAGGGGAGACAATGATTAGTTCCTTTGAAGAGAGAGAGAATTCATCCTCATGGTATGTTTGCTTTACCATGATAGAAGATGTGATATTAGCGGTTGCACAAGTCTAATCATGGTCATTTGCTTGGCAGTTATGCAAAGTGTGTGTGGTGGAAGGTATGTCAATGGTTGAAGAACTTCAAGGTGAGCCAAATAGGTGGAAGTTGCACCGTAAATTTCAACAGGATTTATCGACATGTGATGAAGAATAA

mRNA sequence

ATGTCATTCATTATGGGTCTAGTGAAGCTTAACGTGGAAAAATTTGACGAAATGATCAACTTAGACTTGTGGAAAGTGCAAGTCAAGGATGTGTTGATACAATCTAGGTTACACAAGACGTTGAAGGGAAGACCGAGTGGAGGTGGTTCTGAAAAGCTAAGCGGTGATGATGATCCAATGGAGTCAAGGTTATGCAAAGTGTGTGTGGTGGAAGGTATGTCAATGGTTGAAGAACTTCAAGGTGAGCCAAATAGGTGGAAGTTGCACCGTAAATTTCAACAGGATTTATCGACATGTGATGAAGAATAA

Coding sequence (CDS)

ATGTCATTCATTATGGGTCTAGTGAAGCTTAACGTGGAAAAATTTGACGAAATGATCAACTTAGACTTGTGGAAAGTGCAAGTCAAGGATGTGTTGATACAATCTAGGTTACACAAGACGTTGAAGGGAAGACCGAGTGGAGGTGGTTCTGAAAAGCTAAGCGGTGATGATGATCCAATGGAGTCAAGGTTATGCAAAGTGTGTGTGGTGGAAGGTATGTCAATGGTTGAAGAACTTCAAGGTGAGCCAAATAGGTGGAAGTTGCACCGTAAATTTCAACAGGATTTATCGACATGTGATGAAGAATAA

Protein sequence

MSFIMGLVKLNVEKFDEMINLDLWKVQVKDVLIQSRLHKTLKGRPSGGGSEKLSGDDDPMESRLCKVCVVEGMSMVEELQGEPNRWKLHRKFQQDLSTCDEE

Homology

[Close]

BLAST of Moc02g13240 vs. NCBI nr
Match: XP_022154929.1 (uncharacterized protein LOC111022075 [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 9.0e-15
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 1   MSFIMGLVKLNVEKFDEMINLDLWKVQVKDVLIQSRLHKTLKGRPSGGGSEKLSGDDDPM 60
           +SF+M  VK++VEKFDEMIN  LW+VQVKDV+IQS LHK LKGRPS   SEKLSGD  PM
Sbjct: 145 ISFLMSPVKIDVEKFDEMINFGLWQVQVKDVMIQSGLHKALKGRPSEDASEKLSGDGGPM 204

Query: 61  ES 63
           ES
Sbjct: 205 ES 206

[Close]

BLAST of Moc02g13240 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-14
Identity = 46/62 (74.19%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1   MSFIMGLVKLNVEKFDEMINLDLWKVQVKDVLIQSRLHKTLKGRPSGGGSEKLSGDDDPM 60
           MSF M  VK++VEKFD MIN  LW+VQVKDVLIQS LHK LKGRPS G SEKLS D  PM
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ES 63
           ES
Sbjct: 355 ES 356

[Close]

BLAST of Moc02g13240 vs. NCBI nr
Match: KAF7823890.1 (cytochrome p450 [Senna tora])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 1   MSFIMGLVKLNVEKFDEMINLDLWKVQVKDVLIQSRLHKTLKGRPSGGGSEK----LSGD 60
           MS     VK ++EKFD  IN   WKVQVKDVLIQS LHK L+G+ S   SEK    +SG 
Sbjct: 49  MSKFSSAVKFDMEKFDGRINFGFWKVQVKDVLIQSGLHKALEGKVSSKDSEKSESSMSGG 108

Query: 61  D----DPMESRLCKVCVVEG-MSMVEELQGEPNRWK 88
           D    D   +    +C+ +  ++ V+E+      WK
Sbjct: 109 DWEELDLRAASTIHLCLAKNVLANVQEISTAKELWK 144

[Close]

BLAST of Moc02g13240 vs. NCBI nr
Match: PHU07420.1 (hypothetical protein BC332_23909 [Capsicum chinense])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 8  VKLNVEKFDEMINLDLWKVQVKDVLIQSRLHKTLKGRPSGG----GSEKLSGDDDPMESR 65
          +K  +EKFD  IN  LW+VQVKDVLIQS LHK LK RP+ G     SEK    +D  +S+
Sbjct: 3  IKFEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKERPTSGKGDKDSEKFESSEDSEKSK 62

[Close]

BLAST of Moc02g13240 vs. NCBI nr
Match: KAF3648859.1 (hypothetical protein FXO37_19241 [Capsicum annuum] >PHT69902.1 hypothetical protein T459_25006 [Capsicum annuum])

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-06
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 3   FIMGLVKLNVEKFDEMINLDLWKVQVKDVLIQSRLHKTLKGRPSGG----GSEKLSGDDD 62
           ++MG  K  +EKFD  IN  LW+VQVKDVLIQS LHK LK RP+ G     S+K    +D
Sbjct: 245 YMMG-TKFEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKERPTSGKGDKDSKKFESSED 304

Query: 63  PMESRL 65
             +SR+
Sbjct: 305 SEKSRI 309

[Close]

BLAST of Moc02g13240 vs. ExPASy TrEMBL
Match: A0A6J1DNQ5 (uncharacterized protein LOC111022075 OS=Momordica charantia OX=3673 GN=LOC111022075 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.4e-15
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 1   MSFIMGLVKLNVEKFDEMINLDLWKVQVKDVLIQSRLHKTLKGRPSGGGSEKLSGDDDPM 60
           +SF+M  VK++VEKFDEMIN  LW+VQVKDV+IQS LHK LKGRPS   SEKLSGD  PM
Sbjct: 145 ISFLMSPVKIDVEKFDEMINFGLWQVQVKDVMIQSGLHKALKGRPSEDASEKLSGDGGPM 204

Query: 61  ES 63
           ES
Sbjct: 205 ES 206

[Close]

BLAST of Moc02g13240 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.7e-15
Identity = 46/62 (74.19%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1   MSFIMGLVKLNVEKFDEMINLDLWKVQVKDVLIQSRLHKTLKGRPSGGGSEKLSGDDDPM 60
           MSF M  VK++VEKFD MIN  LW+VQVKDVLIQS LHK LKGRPS G SEKLS D  PM
Sbjct: 295 MSFFMSPVKIDVEKFDGMINFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPM 354

Query: 61  ES 63
           ES
Sbjct: 355 ES 356

[Close]

BLAST of Moc02g13240 vs. ExPASy TrEMBL
Match: A0A2G3BLS3 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_23909 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.5e-07
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 8  VKLNVEKFDEMINLDLWKVQVKDVLIQSRLHKTLKGRPSGG----GSEKLSGDDDPMESR 65
          +K  +EKFD  IN  LW+VQVKDVLIQS LHK LK RP+ G     SEK    +D  +S+
Sbjct: 3  IKFEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKERPTSGKGDKDSEKFESSEDSEKSK 62

[Close]

BLAST of Moc02g13240 vs. ExPASy TrEMBL
Match: A0A2G2YJH4 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_25006 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 3   FIMGLVKLNVEKFDEMINLDLWKVQVKDVLIQSRLHKTLKGRPSGG----GSEKLSGDDD 62
           ++MG  K  +EKFD  IN  LW+VQVKDVLIQS LHK LK RP+ G     S+K    +D
Sbjct: 245 YMMG-TKFEIEKFDGRINFGLWQVQVKDVLIQSGLHKALKERPTSGKGDKDSKKFESSED 304

Query: 63  PMESRL 65
             +SR+
Sbjct: 305 SEKSRI 309

[Close]

BLAST of Moc02g13240 vs. ExPASy TrEMBL
Match: A0A445ABR4 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B02g057347 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 1  MSFIMGLVKLNVEKFDEMINLDLWKVQVKDVLIQSRLHKTLKGRPSGGGSEKLSGDDDPM 60
          MS    +VKL +EKFD  IN  LW++QVKDVLIQS LHK LK        EK+S + D  
Sbjct: 1  MSGYSSVVKLEIEKFDRRINFGLWQIQVKDVLIQSGLHKALK--------EKISEELDLR 60

Query: 61 ESRLCKVCV-------VEGMSMVEEL 80
           +   ++C+       V+GM   +EL
Sbjct: 61 AASAIRLCLAKNVLANVQGMKTAKEL 78

The following BLAST results are available for this feature:

BLAST of Moc02g13240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154929.1	9.0e-15	72.58	uncharacterized protein LOC111022075 [Momordica charantia]	[more]
XP_022139673.1	1.2e-14	74.19	uncharacterized protein LOC111010521 [Momordica charantia]	[more]
KAF7823890.1	1.2e-06	41.67	cytochrome p450 [Senna tora]	[more]
PHU07420.1	1.5e-06	52.46	hypothetical protein BC332_23909 [Capsicum chinense]	[more]
KAF3648859.1	2.6e-06	51.52	hypothetical protein FXO37_19241 [Capsicum annuum] >PHT69902.1 hypothetical prot...	[more]

BLAST of Moc02g13240 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc02g13240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNQ5	4.4e-15	72.58	uncharacterized protein LOC111022075 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CG82	5.7e-15	74.19	uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A2G3BLS3	7.5e-07	52.46	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_23909 PE=4 SV=1	[more]
A0A2G2YJH4	1.3e-06	51.52	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_25006 PE=3 SV=1	[more]
A0A445ABR4	2.2e-06	43.02	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B02g057347 PE=4 SV=1	[more]

BLAST of Moc02g13240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g13240.1	Moc02g13240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding