Moc02g11860 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc02g11860
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Locationchr2: 8564215 .. 8564598 (-)
RNA-Seq ExpressionMoc02g11860
SyntenyMoc02g11860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGAAGGAGTTGAGGAGACAACCAACCAGGCACAGAGCAAACTGAAGAAGTTTGATCTCGAGGAACTGGTAGAACAAGCAGGGTTGCCCTTTACGAAGAAAATAATGAAAGGAAAAATTCGTCTGAAGTTTAAGTTGCCTGCCATCGCACAATACGACAGCTCGACAGATCCCATCGATCACCTCGACGCATATAGGGAATGGGCAGATATTTATGGCATAACAAAAACCATTAGACGCAGAGTGTTCTTTCTCACCTTGACTGGCTTGGCACGTGTCTGGTTCCGACAGTTCAAAAGAAAAGCGACTGAAGCTTCAGGAAATTGGCAAGAGCATTTATCATCTAATTCGTCGGAGGACGGAATAGAAGCATGCATGTAG

mRNA sequence

ATGATTGAAGGAGTTGAGGAGACAACCAACCAGGCACAGAGCAAACTGAAGAAGTTTGATCTCGAGGAACTGGTAGAACAAGCAGGGTTGCCCTTTACGAAGAAAATAATGAAAGGAAAAATTCGTCTGAAGTTTAAGTTGCCTGCCATCGCACAATACGACAGCTCGACAGATCCCATCGATCACCTCGACGCATATAGGGAATGGGCAGATATTTATGGCATAACAAAAACCATTAGACGCAGAGTGTTCTTTCTCACCTTGACTGGCTTGGCACGTGTCTGGTTCCGACAGTTCAAAAGAAAAGCGACTGAAGCTTCAGGAAATTGGCAAGAGCATTTATCATCTAATTCGTCGGAGGACGGAATAGAAGCATGCATGTAG

Coding sequence (CDS)

ATGATTGAAGGAGTTGAGGAGACAACCAACCAGGCACAGAGCAAACTGAAGAAGTTTGATCTCGAGGAACTGGTAGAACAAGCAGGGTTGCCCTTTACGAAGAAAATAATGAAAGGAAAAATTCGTCTGAAGTTTAAGTTGCCTGCCATCGCACAATACGACAGCTCGACAGATCCCATCGATCACCTCGACGCATATAGGGAATGGGCAGATATTTATGGCATAACAAAAACCATTAGACGCAGAGTGTTCTTTCTCACCTTGACTGGCTTGGCACGTGTCTGGTTCCGACAGTTCAAAAGAAAAGCGACTGAAGCTTCAGGAAATTGGCAAGAGCATTTATCATCTAATTCGTCGGAGGACGGAATAGAAGCATGCATGTAG

Protein sequence

MIEGVEETTNQAQSKLKKFDLEELVEQAGLPFTKKIMKGKIRLKFKLPAIAQYDSSTDPIDHLDAYREWADIYGITKTIRRRVFFLTLTGLARVWFRQFKRKATEASGNWQEHLSSNSSEDGIEACM
Homology
BLAST of Moc02g11860 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-23
Identity = 55/96 (57.29%), Postives = 72/96 (75.00%), Query Frame = 0

Query: 6   EETTNQAQSKLKKFDLEELVEQAGLPFTKKIMKGKIRLKFKLPAIAQYDSSTDPIDHLDA 65
           E +  +   K K FDLEEL++QA  PFT++IM+ K+  KFKLP + Q+D +TDP+DHLDA
Sbjct: 154 ESSEKRHSHKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDA 213

Query: 66  YREWADIYGITKTIRRRVFFLTLTGLARVWFRQFKR 102
           YREW DIYG+++ +R RVF  TL G AR+WFRQ KR
Sbjct: 214 YREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKR 249

BLAST of Moc02g11860 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 115.2 bits (287), Expect = 4.3e-22
Identity = 55/100 (55.00%), Postives = 70/100 (70.00%), Query Frame = 0

Query: 2   IEGVEETTNQAQSKLKKFDLEELVEQAGLPFTKKIMKGKIRLKFKLPAIAQYDSSTDPID 61
           I+  E +  +   K K FDLEEL+ QA  PFT++IM+ K+  KFKLP +  +D  T+P+D
Sbjct: 55  IDRPESSEKRHNQKEKGFDLEELLGQADSPFTEEIMREKVPPKFKLPTVKPFDGMTEPVD 114

Query: 62  HLDAYREWADIYGITKTIRRRVFFLTLTGLARVWFRQFKR 102
           HLDAYREW DIYG++  IR RVF  TL G AR+WFRQ KR
Sbjct: 115 HLDAYREWMDIYGVSDAIRCRVFSTTLNGSARIWFRQLKR 154

BLAST of Moc02g11860 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 100.9 bits (250), Expect = 8.3e-18
Identity = 49/67 (73.13%), Postives = 52/67 (77.61%), Query Frame = 0

Query: 37  MKGKIRLKFKLPAIAQYDSSTDPIDHLDAYREWADIYGITKTIRRRVFFLTLTGLARVWF 96
           MK K R KFKLPAIA+YD S DPIDHLDAYREWADIY I + IR RVF  TLTG AR WF
Sbjct: 1   MKEKARPKFKLPAIAEYDGSADPIDHLDAYREWADIYDIREAIRCRVFSFTLTGSARNWF 60

Query: 97  RQFKRKA 104
           RQ KR +
Sbjct: 61  RQLKRNS 67

BLAST of Moc02g11860 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-17
Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 0

Query: 37  MKGKIRLKFKLPAIAQYDSSTDPIDHLDAYREWADIYGITKTIRRRVFFLTLTGLARVWF 96
           MK K+  KFKLPAI +YD STDPIDHLD Y EW DIYGIT+ IR RVF  TLTG  R+WF
Sbjct: 1   MKEKVPPKFKLPAIKKYDGSTDPIDHLDVYHEWTDIYGITEAIRCRVFSFTLTGSTRIWF 60

Query: 97  RQFKRKA 104
           +Q KRK+
Sbjct: 61  QQLKRKS 67

BLAST of Moc02g11860 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 91.7 bits (226), Expect = 5.0e-15
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 34  KKIMKGKIRLKFKLPAIAQYDSSTDPIDHLDAYREWADIYGITKTIRRRVFFLTLTGLAR 93
           ++IMK K+  KFKLP + Q+D + D +DHLDAYREW DIYG+++ ++ RVF  TL+G AR
Sbjct: 2   EEIMKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSAR 61

Query: 94  VWFRQFKR 102
           VWFRQ KR
Sbjct: 62  VWFRQLKR 69

BLAST of Moc02g11860 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 6.4e-24
Identity = 55/96 (57.29%), Postives = 72/96 (75.00%), Query Frame = 0

Query: 6   EETTNQAQSKLKKFDLEELVEQAGLPFTKKIMKGKIRLKFKLPAIAQYDSSTDPIDHLDA 65
           E +  +   K K FDLEEL++QA  PFT++IM+ K+  KFKLP + Q+D +TDP+DHLDA
Sbjct: 154 ESSEKRHSHKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDA 213

Query: 66  YREWADIYGITKTIRRRVFFLTLTGLARVWFRQFKR 102
           YREW DIYG+++ +R RVF  TL G AR+WFRQ KR
Sbjct: 214 YREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKR 249

BLAST of Moc02g11860 vs. ExPASy TrEMBL
Match: A0A6J1E1E7 (uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025548 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 55/100 (55.00%), Postives = 70/100 (70.00%), Query Frame = 0

Query: 2   IEGVEETTNQAQSKLKKFDLEELVEQAGLPFTKKIMKGKIRLKFKLPAIAQYDSSTDPID 61
           I+  E +  +   K K FDLEEL+ QA  PFT++IM+ K+  KFKLP +  +D  T+P+D
Sbjct: 55  IDRPESSEKRHNQKEKGFDLEELLGQADSPFTEEIMREKVPPKFKLPTVKPFDGMTEPVD 114

Query: 62  HLDAYREWADIYGITKTIRRRVFFLTLTGLARVWFRQFKR 102
           HLDAYREW DIYG++  IR RVF  TL G AR+WFRQ KR
Sbjct: 115 HLDAYREWMDIYGVSDAIRCRVFSTTLNGSARIWFRQLKR 154

BLAST of Moc02g11860 vs. ExPASy TrEMBL
Match: A0A6J1DZ49 (uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024851 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.0e-18
Identity = 49/67 (73.13%), Postives = 52/67 (77.61%), Query Frame = 0

Query: 37  MKGKIRLKFKLPAIAQYDSSTDPIDHLDAYREWADIYGITKTIRRRVFFLTLTGLARVWF 96
           MK K R KFKLPAIA+YD S DPIDHLDAYREWADIY I + IR RVF  TLTG AR WF
Sbjct: 1   MKEKARPKFKLPAIAEYDGSADPIDHLDAYREWADIYDIREAIRCRVFSFTLTGSARNWF 60

Query: 97  RQFKRKA 104
           RQ KR +
Sbjct: 61  RQLKRNS 67

BLAST of Moc02g11860 vs. ExPASy TrEMBL
Match: A0A6J1D3B7 (uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016619 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.2e-18
Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 0

Query: 37  MKGKIRLKFKLPAIAQYDSSTDPIDHLDAYREWADIYGITKTIRRRVFFLTLTGLARVWF 96
           MK K+  KFKLPAI +YD STDPIDHLD Y EW DIYGIT+ IR RVF  TLTG  R+WF
Sbjct: 1   MKEKVPPKFKLPAIKKYDGSTDPIDHLDVYHEWTDIYGITEAIRCRVFSFTLTGSTRIWF 60

Query: 97  RQFKRKA 104
           +Q KRK+
Sbjct: 61  QQLKRKS 67

BLAST of Moc02g11860 vs. ExPASy TrEMBL
Match: A0A6J1D7D2 (uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018307 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.4e-15
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 34  KKIMKGKIRLKFKLPAIAQYDSSTDPIDHLDAYREWADIYGITKTIRRRVFFLTLTGLAR 93
           ++IMK K+  KFKLP + Q+D + D +DHLDAYREW DIYG+++ ++ RVF  TL+G AR
Sbjct: 2   EEIMKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSAR 61

Query: 94  VWFRQFKR 102
           VWFRQ KR
Sbjct: 62  VWFRQLKR 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158830.11.3e-2357.29uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_022159109.14.3e-2255.00uncharacterized protein LOC111025548 [Momordica charantia][more]
XP_022158344.18.3e-1873.13uncharacterized protein LOC111024851 [Momordica charantia][more]
XP_022147761.11.1e-1768.66uncharacterized protein LOC111016619 [Momordica charantia][more]
XP_022150035.15.0e-1558.82uncharacterized protein LOC111018307 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DWY06.4e-2457.29uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1E1E72.1e-2255.00uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DZ494.0e-1873.13uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1D3B75.2e-1868.66uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A6J1D7D22.4e-1558.82uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc02g11860.1Moc02g11860.1mRNA