Moc02g11440 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g11440
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Location	chr2: 8248924 .. 8249404 (+)
RNA-Seq Expression	Moc02g11440
Synteny	Moc02g11440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTCCAGTGGAGTCCAGTTGGTGGTTTCAGTAGAGGTTCTAAGAAGTCCAGTATGAGTGATGAAGATTGGGAGGAAATGGATTTGAGGGCTAGAAGCGTGATACGAACAGGTTTTGCTTAGAATATTCTTGCAAATTTGCATAAAATTTCGACAGCCAAAGAACTCCGGGAGAAACTCAAAGCGTTGACGCTGCGAATGGAGGAAGGTACGAAAATTTCAGATCATTTGAGTTAGAGGCGATCGAAGTGAAGATAGATTACGAAGATATAAGGCACTCAGGCTCATTTTGTCACTTCCACCTTCTTATGAACATATGAAGTCGATCTTGATTTACGGGAAGGATACCTTGAACTTTGCCAAGGCTACTAGTAAACTGTTGTCAGAGGAAAAAAGGCTGAAGAGTGAAGGACGTACTTCACATGAAGATTCAGCACTAGTAGCTAGCAATTGGAAGAAGAAGAAAGACTCCGTGTAA

mRNA sequence

ATGGTGGTCCAGTGGAGTCCAGTTGGTGGTTTCAGTAGAGGTTCTAAGAAGTCCAGTATGAGTGATGAAGATTGGGAGGAAATGGATTTGAGGGCTAGAAGCGTGATACGAACAGGCGATCGAAGTGAAGATAGATTACGAAGATATAAGGCACTCAGGCTCATTTTGTCACTTCCACCTTCTTATGAACATATGAAGTCGATCTTGATTTACGGGAAGGATACCTTGAACTTTGCCAAGGCTACTAGTAAACTGTTGTCAGAGGAAAAAAGGCTGAAGAGTGAAGGACGTACTTCACATGAAGATTCAGCACTAGTAGCTAGCAATTGGAAGAAGAAGAAAGACTCCGTGTAA

Coding sequence (CDS)

ATGGTGGTCCAGTGGAGTCCAGTTGGTGGTTTCAGTAGAGGTTCTAAGAAGTCCAGTATGAGTGATGAAGATTGGGAGGAAATGGATTTGAGGGCTAGAAGCGTGATACGAACAGGCGATCGAAGTGAAGATAGATTACGAAGATATAAGGCACTCAGGCTCATTTTGTCACTTCCACCTTCTTATGAACATATGAAGTCGATCTTGATTTACGGGAAGGATACCTTGAACTTTGCCAAGGCTACTAGTAAACTGTTGTCAGAGGAAAAAAGGCTGAAGAGTGAAGGACGTACTTCACATGAAGATTCAGCACTAGTAGCTAGCAATTGGAAGAAGAAGAAAGACTCCGTGTAA

Protein sequence

MVVQWSPVGGFSRGSKKSSMSDEDWEEMDLRARSVIRTGDRSEDRLRRYKALRLILSLPPSYEHMKSILIYGKDTLNFAKATSKLLSEEKRLKSEGRTSHEDSALVASNWKKKKDSV

Homology

[Close]

BLAST of Moc02g11440 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 134.8 bits (338), Expect = 4.8e-28
Identity = 90/176 (51.14%), Postives = 94/176 (53.41%), Query Frame = 0


Query: 9   GGFSRGSKKSSMSDEDWEEMDLRARSVIRT------------------------------ 68
           GG SRGSKKSSMS EDWEEMDLRA S IRT                              
Sbjct: 358 GGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALYQAK 417

Query: 69  -------------------GDRSEDRLRRY------------------KALRLILSLPPS 118
                              G +  D L                     KALRLILSLP S
Sbjct: 418 GISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPXS 477

[Close]

BLAST of Moc02g11440 vs. NCBI nr
Match: XP_022145135.1 (uncharacterized protein LOC111014651 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-12
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 50  KALRLILSLPPSYEHMKSILIYGKDTLNFAKATSKLLSEEKRLKSEGRTSHEDS 104
           KALRLILSL PSYEHMK IL+YGKD LNFA+ATSKLL E++RLKSEGRTS  D+
Sbjct: 33  KALRLILSLLPSYEHMKPILMYGKDPLNFAEATSKLLLEKRRLKSEGRTSRFDT 86

[Close]

BLAST of Moc02g11440 vs. NCBI nr
Match: KAF5758504.1 (putative RNA-directed DNA polymerase [Helianthus annuus])

HSP 1 Score: 80.9 bits (198), Expect = 8.2e-12
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 50  KALRLILSLPPSYEHMKSILIYGKDTLNFAKATSKLLSEEKRLKSEGRTSHEDSALVASN 109
           KALRLILSL  SYEHMK IL+YGK+TL +A  T KLLSEEKRL S G TS E + L+  N
Sbjct: 155 KALRLILSLTSSYEHMKPILMYGKETLKYADVTEKLLSEEKRLGSSGHTSSEGTVLICGN 214

Query: 110 WKKK 114
            KKK
Sbjct: 215 GKKK 218

[Close]

BLAST of Moc02g11440 vs. NCBI nr
Match: KAF5765959.1 (putative RNA-directed DNA polymerase [Helianthus annuus])

HSP 1 Score: 80.9 bits (198), Expect = 8.2e-12
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 50  KALRLILSLPPSYEHMKSILIYGKDTLNFAKATSKLLSEEKRLKSEGRTSHEDSALVASN 109
           KALRLILSL  SYEHMK IL+YGK+TL +A  T KLLSEEKRL S G TS E + L+  N
Sbjct: 155 KALRLILSLTSSYEHMKPILMYGKETLKYADVTEKLLSEEKRLGSSGHTSSEGTVLICGN 214

Query: 110 WKKK 114
            KKK
Sbjct: 215 GKKK 218

[Close]

BLAST of Moc02g11440 vs. NCBI nr
Match: KAE8709065.1 (hypothetical protein F3Y22_tig00110332pilonHSYRG00834 [Hibiscus syriacus])

HSP 1 Score: 78.2 bits (191), Expect = 5.3e-11
Identity = 59/144 (40.97%), Postives = 75/144 (52.08%), Query Frame = 0


Query: 12  SRGSK-KSSMSDEDWEEMDLRARSVIR-------------------TGDRSEDRLRRY-- 71
           S G K KS MS+E+WEE+D+RA S IR                    G +  D L     
Sbjct: 55  SSGDKGKSKMSEEEWEELDMRAASQIRLCLAKNVLANEKFHKLQMEEGTKISDHLSALNG 114

Query: 72  ----------------KALRLILSLPPSYEHMKSILIYGKDTLNFAKATSKLLSEEKRLK 117
                           KALRLI SLP SYEHM+++L+Y K+ +NF++ TSKL+SEE+RLK
Sbjct: 115 IVSELESIGVKIDDEDKALRLIWSLPSSYEHMQTVLMYEKENVNFSEVTSKLISEERRLK 174

[Close]

BLAST of Moc02g11440 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.3e-28
Identity = 90/176 (51.14%), Postives = 94/176 (53.41%), Query Frame = 0


Query: 9   GGFSRGSKKSSMSDEDWEEMDLRARSVIRT------------------------------ 68
           GG SRGSKKSSMS EDWEEMDLRA S IRT                              
Sbjct: 358 GGSSRGSKKSSMSYEDWEEMDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALYQAK 417

Query: 69  -------------------GDRSEDRLRRY------------------KALRLILSLPPS 118
                              G +  D L                     KALRLILSLP S
Sbjct: 418 GISNRLYLKEQFHTLQMEEGMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPXS 477

[Close]

BLAST of Moc02g11440 vs. ExPASy TrEMBL
Match: A0A6J1CTL7 (uncharacterized protein LOC111014651 OS=Momordica charantia OX=3673 GN=LOC111014651 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.8e-12
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 50  KALRLILSLPPSYEHMKSILIYGKDTLNFAKATSKLLSEEKRLKSEGRTSHEDS 104
           KALRLILSL PSYEHMK IL+YGKD LNFA+ATSKLL E++RLKSEGRTS  D+
Sbjct: 33  KALRLILSLLPSYEHMKPILMYGKDPLNFAEATSKLLLEKRRLKSEGRTSRFDT 86

[Close]

BLAST of Moc02g11440 vs. ExPASy TrEMBL
Match: A0A6A3B141 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110332pilonHSYRG00834 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.6e-11
Identity = 59/144 (40.97%), Postives = 75/144 (52.08%), Query Frame = 0


Query: 12  SRGSK-KSSMSDEDWEEMDLRARSVIR-------------------TGDRSEDRLRRY-- 71
           S G K KS MS+E+WEE+D+RA S IR                    G +  D L     
Sbjct: 55  SSGDKGKSKMSEEEWEELDMRAASQIRLCLAKNVLANEKFHKLQMEEGTKISDHLSALNG 114

Query: 72  ----------------KALRLILSLPPSYEHMKSILIYGKDTLNFAKATSKLLSEEKRLK 117
                           KALRLI SLP SYEHM+++L+Y K+ +NF++ TSKL+SEE+RLK
Sbjct: 115 IVSELESIGVKIDDEDKALRLIWSLPSSYEHMQTVLMYEKENVNFSEVTSKLISEERRLK 174

[Close]

BLAST of Moc02g11440 vs. ExPASy TrEMBL
Match: A0A2P5EHD2 (Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_192020 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.4e-11
Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 50  KALRLILSLPPSYEHMKSILIYGKDTLNFAKATSKLLSEEKRLKSEGRTSHEDSALVASN 109
           KALRLI SLP SYEHMK IL+YGK+T+ F++ TS LLSEE+RL   G  S E SAL+  N
Sbjct: 33  KALRLIWSLPSSYEHMKLILVYGKETVIFSEVTSNLLSEERRLSGGGNNSSEGSALIVEN 92

Query: 110 WKKKKDS 117
            KKK  +
Sbjct: 93  GKKKNSN 99

[Close]

BLAST of Moc02g11440 vs. ExPASy TrEMBL
Match: A0A2P5F7D0 (Zinc finger, CCHC-type (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_104070 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 9.8e-11
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 50  KALRLILSLPPSYEHMKSILIYGKDTLNFAKATSKLLSEEKRLKSEGRTSHEDSALVASN 109
           KALRLI SLP SYEHMK IL+YGK+T+ F++ TS LLSEE+RL   G  S E SAL   N
Sbjct: 9   KALRLIWSLPSSYEHMKLILVYGKETVIFSEVTSNLLSEERRLSGGGNNSSEGSALTVEN 68

Query: 110 WKKKKDS 117
            KKK  +
Sbjct: 69  EKKKNSN 75

The following BLAST results are available for this feature:

BLAST of Moc02g11440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139673.1	4.8e-28	51.14	uncharacterized protein LOC111010521 [Momordica charantia]	[more]
XP_022145135.1	3.7e-12	79.63	uncharacterized protein LOC111014651 [Momordica charantia]	[more]
KAF5758504.1	8.2e-12	67.19	putative RNA-directed DNA polymerase [Helianthus annuus]	[more]
KAF5765959.1	8.2e-12	67.19	putative RNA-directed DNA polymerase [Helianthus annuus]	[more]
KAE8709065.1	5.3e-11	40.97	hypothetical protein F3Y22_tig00110332pilonHSYRG00834 [Hibiscus syriacus]	[more]

BLAST of Moc02g11440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc02g11440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG82	2.3e-28	51.14	uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1CTL7	1.8e-12	79.63	uncharacterized protein LOC111014651 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6A3B141	2.6e-11	40.97	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]
A0A2P5EHD2	3.4e-11	61.19	Zinc finger, CCHC-type OS=Trema orientale OX=63057 GN=TorRG33x02_192020 PE=4 SV=...	[more]
A0A2P5F7D0	9.8e-11	61.19	Zinc finger, CCHC-type (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_1040...	[more]

BLAST of Moc02g11440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc02g11440.1	Moc02g11440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0016020	membrane
molecular_function	GO:0043167	ion binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004672	protein kinase activity