Moc02g07800 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc02g07800
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionSWR1 complex subunit 6
Locationchr2: 5581273 .. 5594057 (-)
RNA-Seq ExpressionMoc02g07800
SyntenyMoc02g07800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAGCTCTGACAGGCCCTCCGACAACGGCATAACGGCCATCGGATCGCCCATGAAACACGGCGCGCTATTGGAACAACATGGTATTAATTCTATGTCCCTGTGGACAACATGAAATGAATCGGCTTGTACCTTCGTTAGGTCGGCCGGCTAACATGCACGGTAGATCGGCTCGACGTTGCACCTCTGAACTAAAGGAATTTGTATATTAATCCCAATTGCTTGAGTAGAAACATCCTTAAATTGTTGACACGTGGCAGCAGGGAAATAGCCTACAACCCAGTTTAATTGATGGATTATTTTATAGTATAGTCTACTTAATTAAGAAAGAAACAACTTTTTACAATGGTTCCAAAACAAACTCCAAAAAGTTGTATAAAAATAGTGATGGTAACGAAACACATATCTTCTTATTTTGGATATTTATTTTTGCTATAAAGCTCAATCACTTTCTATTTTTTCTCATTTCCACTCTTTTTCTTTGGTTTTAATTATGAGAAAAGAAGAAAGATGAAGAAAAATGAGATTTGATGCTCCCTAGCTAGCCATTATCAACACTTAGAGAATATATGTGACACTTGATATTGATATATATACCCAAACAAAGTGAGATATATTCACTTACATTTTTAACTTTGTTATATAAAATTGAGTTATTATCATATTTTATTTTTCACTATTTTTGGAATGCACCGAGGGAAAATTGTCAACCTGAATATATAATTCAAATAATTAGGTATTTGTACTTTTTTAAAGAGTTTTGTAAATTCAAATATTCCCTCCTTATTTTTACGGCGCAATAATTATAAGAAACCACTTAAATTCTATGCTTAAATCAATCCACTTCTTCGCTTTATTGCATACAGATGGCCTCAATTATACGTGGGTGTAATATACTGTCATTGATGGATGTGATATCACAATAACGAAACTTACATAATTGAGCCTAATCTACCAATGAAATAGATAAGTACAAAGCACTTAAAAACCTTTTTTTTCCTTTAATGTAAATTAATAAATCCAAAGATTTTGAAGTCTTCCTTTTTATGATTAGGGTTATTAAACAACAAATTGTTTTTTTTAAGCATAAAATTTTCCACTTTCTTCCTTCCAACTGTTGCTGATTCAACTTTCTTGTTTCAAAACTTTAATTCTCAATCTTTTTCAATCTAGTTATAATTATATACCTCTGCTAACTTAAAAAAAAAATTAAATTTATGCTCATAATTAATTACCCTACCTATTTAACCTTCTGTGATGATTATTGATAATAATATTAGTCAGCAAAAGATCTTATTTAACTTTAGATTCCTATAATAATCTCTAATTAAAAATTAGTGATCACAAATTGGTTGCAAGTGAGATGTGGGAGTGGAATAAGCTATAATTATTATTGGACTTTTTATCTAATTTTTTTTAATTTTAAAGTCAGTCTATATATTGTTATTGGTGGCATAAACCAAGGTAATTGAAAAGTCCTGACAGGAGAATTGAAAATTGAAAATATGTTAAATTATAATAATTAGATTTAATGTAAGCATTAATTATTTTTACTTTTAACTTAGTTATCTAACTTTTTATAATTTCTTATAGTATCCATCTTCAATAAAAAGTCGCGAGTTTAAATTTTCACTCTCGATGTTAAATTAAAAAAAAGCTTTTAAAATTTCAATTTTCTATGATGGTCTTTTATTTAGGGGACGAAACCGACACCAAATTGATCTATTGATTTAAAAATTTACTCAAATCATTTAATTAAATTAAAACCAAAATAGACTAAATTAAAATGTTAAAAAAATAGCTAATTTTTTGAAGCACAGCATATGACTGTGTGTATTTGGAAACTCAAAAAAGGTCATCCAATCCAACATTGCTCCAAGTCAAATAGGTTTAATTCGTTGAGACATCGAAAAAGAAGGTACACTGAGTTTGTATATATAATTAGGAGGGAATGAGTTAATTAAGAGGGAATGAGTTCAAACCCCATGATGACCGTCTACCTTAGGAATTAGTAATTCCTATGTGTTTCCCGGCACAAAATATTGGTTGTTGTCTCGTGAGATTAGTCGAGGTGTGTGCAAGTTGACCCGGACACTCACGGATATCAAGAAAAAAAAAAGGTGCACTGAGTTTGTATATATAATTACTCTCTTAACCATACTTACATGATCTCACGATCTCTCTCATTCACATGTAGTGTTGGTTAATTCACGTATCCCTCCTCTACTCAGGTATCACATGTTCGATTTGTCCTTGAACTATATTATATTGAGAGAGGTTATACCCTATACTATTTGTAACGTCCCAAGCTCATAGATTCATAATCTACTGCCATGAATATTTAAAAAATGTAGAGACCAAAATCAACGAACATGAAAAAGTACACAAATAAAAAATAATTTCGAAAGATTAAGATTATTAAATCAATGATGATTAATTTTGACGAATTAAGAGATTCCAAAAAGCGTAACTCCCCATTAACGCATCGATGTTGGGTTAGTGAAGAGCATTCAATTGACATTTGGTGCCCATAAAGTCGTTTGACCCGCCATAAAGTCTTTTTTCTTTTTTCTTTTTTCTTTTTTTTCTTTTCTCCTCTTAATTAATTCTACCATTAAATTAATACATATACATAAATATATATATATTCCTCTCCCTTTCCCCATCCGACGCCCACAATTCAATCTCCCTCCCCAATCAAACGGCTCATATTCCATCTCCTCACCCTCCCTTTTTGCTCCTCCCAACGCCCACAATCGAGATCGTAGTCGGCAGCGTATGCCTCCAATTTAAATAATTTTAAATAATTAACATCGGTTTTTATTTTATTTTATTATTTCGAATTTGAAGTTTTATTTTTTACATAAAAGAATAGAGATTTAATAGGACCGTCTTTGCACCCGATGTTATTATTATTATTATTATTATTAATTTAGTCTGTACGAATTGAAGGAACCAATTAAGTCCCCAATTTTTAATATTTTTGTTTTCCTCTTATAAATATGCCCCGTCTTCCTCCCTCTTCTTCCCCATGGCTTCGGAGAGGGAGCCGCCGCCGATCTGCTGCTCCGGCCGCCGGAATTAGTACGGGAGAATCTGCAAAGCTCAGGAGGGATAGCGCCATTCTCTCGCTGCCGCCGTGGCGCTATCTATCCTGAGTTTCATGGGTTCTTCTTGCTTGGCTTTGATGTGAAAAATATATTCGTGTTGGTTGGGAAAGATAGTCTTTGCTGGAAATTGCAAATTCTGATCCGAATCTGTGTTACATTTCAGGTATTTTGTATGGTTTTTTATTGTTTTTATTGAAATGATTGAATTTGTTGAAATTACAATGGAAAGAGCTGAGAGCTAGGGTTTCATGCATTGACTGGAAAATATTTGCAGACCAAAAGAAAAATTTTGCAACAGTAGGCCTATTATATATATATATATATATTAAATAAAGATGAAGGATATGGTGATGAAGCAGAAAGTTGAGTGTCAAAAAAGGAAAATAGAAAGAAAGAAAGGGGAAGAAAAGTGGAAGGGTTTTATCCAGGCCAAGGGTATTGGGGATGGATTTTGTGGTTGGCCATTAGAGGACACGTGTAGGGTCGGATGCAAAGGAGGATTCTGGGTTGTTGATTCAAATTTAGGGCACAAGGTATGTCTACATGCAAGGGGACACACAAATGTCAAAATTGATATATACATTTGCAGAACTAAATTTTGTAGAAAATGGATTTCTATATTATATATCTGGATGAGGAAAGTTGTTGAGTTCGAATTTTGGTAAGTAGTTTAATGTAAATTATATATGTGATATATAATTTTTTGTTATTCCAAGATCAGCCGTCTAATTAAGTATTTAATGTTTTTAACCTGGTGGTCTTTTGTATTTTATTTTGTTTGCCGGAATATCAACTTATTTCTCTATCAGATCAAAAGTTTTTGTTTTTGTTTTTTTTTAATATCTGCCCTTTATTTCTTCCATTTTTTTGGGTTAAAATTAAAGATTTTGGAGCGGTTTGGTAATCATCCTGTTTTGAATTTTTATTTTTAAAAATTATTCTTGTTTTTGTGCAATTTCATTGTTAAGTTTTTCACAATATATTTGAATTTTTAGCTAATTAAGAAAATGCTTTTTTAGTTTTAAAATTTGTCCTGTATTTTCTAAGTTTAATTTTTAAAAACAAACAAACAAAAAATAAAATAGTTATCCAATCCATCATAATTAGTAACTGGTTATTTTATATATATATATGTTTTTTCCTTGAAAAGTTATATATATATATATGTTGATCTCACTTAGGAAAAGAAAAAGAAAAGAAGAGCTGCACATTTCTTTAGGAGAGAGTTGATAATTTTTTAGAATACATAAAATATAAAAAAGTTGTGGCGAAAATGGTTATTAATAAGTGTCTGGAGAAAGTGAGAGGTTTTTGTTCCTTAAACCCGATAGTTAAGATTTTCGATGTATCGAATTGTTAAGACATTTATCTCCTACTAAAATATAATGTATTCTACGGTTAAGACATGTATCTCCGATTAAAATATAATGTATTATACTTTTACATATTGTTATACTAAATTTTAACTTTATGAAAATGCAGTAAAATTGCACTAGTCATAGATATGATTCTCAATCAACAAGGGAAAAATGTAATATGTATTTATGTAGCTATGGGTCAAAAAGCATCTTCCGTGACTCAAGTAGTGACTAAAATATCGATGTGGATGAATATTTTAAAAAATATATATAAAATCTTAACAAATATGTTAATTAAAACCTAAATATTTTAGGATCCTTTCAATAACTAAGTAAAAAATTATCATATTTTATGAAAATTTTAATTATAGTGATATTTTTTATAATTTTTTTTTGTGATTCTTTAAAAATGTCAATTCATCTTTTACGTTGATATCAAATCTATGGATATTATAGAAATGTCGATAGAAATATCGATACGTTGACGAATAATATCCTAGCAAAATTACTTTATACTTTAGAAAAATTGAATTATGGTTGGATAACGGAGGGAAGTTTATAGAAAAAGGAGTGCTGGAGTTGTTTGAAATTTTGGAGAGGTGAAATCTTTTTTATTAGAATTATTTGGAATATGAAACATTTTTGTGAAAATTTTTATTGTTTGGTTTATTTAAAAAAAAAATCAAGATGAATGATTTTTTTTTAAAAAATTAAGTATGGAGGATGAGACTGATATTTTAATATTAAAAAAATGCCGGTTCATATTTCATAAAGAGTAATATTTTTTTACTTATCATATTATAATTTTATATATTCAATTTCAAAAGTGTTATTTGAAATGAAACATTTGATATGCTAAAAGTAAAATTGAAACTTAAAAAATATTAGGTATAAAATTAAAACGTGATGTATACTTTAGGAATTACATGACATATGATATTTAGTCACTTTTTAATCTCGATCATTTTTTTTAATCTCGATAATTTTTCACATACTAATTCAAGTAGCTTTTTTAAATCTAGGGTTTATTTAAGAATTGCTTCAAAATAATTTTCTTTTTTTAAAATGAAAATTTAGTAAAACATGCTTATATAAATTGACATATTCCAATTGATAATTTTAAGCATTCATTTTAGATTCAAATATTTCCATTTTTATATAAATTTCTGTCTCCAAAGTAAATACTTGTTGGAATTATATAAAATATATTCCTCTCTCTCTCTTTTTTTTTGGATGTCTTATTGCATTATACCTTTGGATTAATTGGGAATTAAAAATAAAGTAGGAAAGAAAAGGACTATTACTATATGGATATTTATTTATTTATTTCAACTCACTTTATGAAATTGAATTTGAAATTTGTATAACCCATCTTTATATATATAAATGAGGGAAGAAAAGATAATGAATGAATTGATTTTTTAAAATGTTGATGTCTTATTTTGATGTGTATAGATATTGATGGATATGGTATCTTGGAATAATTATAGTTTTTTTTTAAGTTCTGAAATAATTGTTGAATTAAATCAAATTTGATAAATATTTTTTTAAAACTTTTTTGCAAAGGGAATATATATACAAATTGGCCAACAATATTTTCTAAGATCATACCAGTGACCTCTCATATCAATATCGACCCTTTCATTTATTGAAATTTTGATAAAAAATATCAAAATTTTAATTAGAAAATTTACTCTATATGTCTTTTATTCTAGTTCAACACTATGTTGGTGAGAATTCAAACCTCTTATTTTTTATCGATAATATAATACTCAAATTGGCTAAAGTTGGTTGCGTAGATTCATTATCTATATCCTTAAAATTTGAAAATTAATTTTCAAATATTAATGATTGTGAGATGAAAATAGAACTCTCACCGGATTAAAATTATAATGTAGGATATTAATAATAAATATGTAATTTTGGGTGCAATATTCTTTTATGTAATTTATAATTTAAAATTAAAATATTGATTAATATTTTAAAAGTATTTGTAGCATTTTTAAATAAATAAATAAATAAATAGAGGAAATGCTGCACAATGAAATATGTGTCAATGGTAGTTACAATTATCTTGCAGTATAAATAGAGATGCAATTTGATAAAAATGATTAAATAATGTAACATTTTCAAATGAACAAGAGTATGATCGATCCGATGAATACCATCTCTAAATTAGATGGTTTAATTGCCTTGTATAATAGCAGGTATTGTTACAATTTGAAACGGAAGTCTAAAAAGCTTTTATATTTATTTCCCTTCATATTAATGTGATTTAGAAACAAATATTAGAAGATATTAATATTATCTGACTTTTGTTTCATTGGCAACCATGCAAGTTGGTGGTCTTGCGTGTCCGTTCAGATGCCCGTCTCTTCAAGAGACGACCATTATTTTCAAATTTTTTAAAAACTTAAACATGGCGCCAATGGAGCGCCATATCATTTGGTCAAGTACCGATGTGTATTGGTCATCTCTTGAAATCCATTTTTCAAATATTATTCTTGAAAATAGTTTGGGTAGCGACATATATTTGGAATAAGTTTGAAAAATATCATTATTAGAAAAAAAAAAAATCTCATATATTTTCAGTTTTTGTAGAGTACGATGGAAATAACAAAAATTGGTGGGGGTAAAAATCGAAACTAAAATTTTAAAAGTTAATATGATGAAATGTTAATAAAACGTTAATATTGGTGAAATGTTAATCAAACAAATAAGGTTATACTGTACTTTAATTGAAGTAATGATTTAGTCTACTCGGAGATAATTAACACATATCTCAAACCAAGAGCTGGTGAGTTCGAATCCTCTCTCTCAATATGTTGTATTAAAAAAAAAAATTTATATAACAATTTAGTCTTTATACTTCAAAAAATTTGTAACAACTTAATTTTTAAAATTTGTAACTATTTAATCTTTGTAGTTTAAAATTGGTTATGATTTAATGCGTATGGCGAGTTTTTTTAGATCAATAACCAATGAGAGACCAAATGTATTTATATTATTAAGACTAAATCGTTATATGATAAAAATCGATATTTTATTTTATAAATACTAACGATTAAATTGTTACAAATTTTAAATTAGAAAGATTAAATTGTTACATATTAAAATTTAACTCTATAATAATATTGAGCCTAAAGATATATAAAAATGTTGAAAGCTGGGGAAACTTTAATACGCTATGATATTAATTAAATTTGTCTAGAACATATTAGCCTCCTTATTTTCAAGCCTATGAAATTTTGGTTGTTTTTGTGTTGTGTAAATTGTGATAATATATACCGTTTATTAAAACAGATGTCAAAATTTAGACACTACCTTAAATTTCCCAAATTAAATACTACTTTCAAAATTCTCTTCCTTCTTACAATTTTTTTTTTCAGTAAGTACTCCTTCCAACTGTGTTTTCTTAATAAAATAGCAAAAACTAAACAGTTTCACCTACTCAAAATTAAGAAGGGATGTCGTCTACTACTAAAATTTCAATTTTTGCAGTAGCTGTGTTCTTTTACACAAAAGAAAACTTAGAAAGAACAAAGAAGTTTGGATCGAAAAAATATGCTTCCCAATTCCAACAAACATCAAGATGCATGAAGTTGACCTATATATATCTCGAAAGAAAAATACAAGAAAATATGAGAAAAAAGTGCTTTCGAAGTGTGAGATATGAGAACAAGAAGTACATTTGTCGAATAATTGCAGAGCTCCAACGCTGAAACCTAAAGCAAACATTGCATTGAGCATGCTCACGTTGGTAGAAAATGAAAAAAATAATTATTAAAAATAACATATATATATATATATATATATATATGACAAAAACATTTAGTAAAATTGGTAAAATAGCAATTATTTTTTCAATTACAGTATTTTTTGAAAAAAAATGAAGATCCAATTTTAAAATGATAACTTTATTCAAATGATATACGTTTATAATATATTTGTAATATATGATTACTGATATATGTATGTGTCATATATATGATATATACTATTGATATGAATATTTGTATAGTAATGTCTGGTCCTGAATTGACGGGAGTTGTAATGAGTCTTCCAAATATGTGATGGTACTAAAAAATTTTGAAAAATGTGTATTTTGAAATATATAAAAGATTTTCGATGATGGTTGCAATTTCCCTAAATTCTATTGTTGGATCATATAAGGGCGGGTGTATCACTGATCAACGGTGGACTTGGTCGTTGCAGCGGCGCCGGTGTAAATTTGCAGTTCCAGCATAAACATAGACACTCGCCGTAGTTCAGAACGGTGAACATCCACCGGAAAGTTTACCGGCCAGAAATCCGAGCCCTCAGGCTTCAGGTTTGTAACTTTCTCTCTGATGCTCTTTCAGTCGTGTTCTTACAATGTACATTACGATCACCACTCGATCTTGATTTGGTAGCGCTCCAGCGGCGACCCTCTTTGAATTTCTCGGTCTCTGTTCTTCTCCAATTAACAGAATCGATTAGGTTTTTCCTCTTAGGCTAGTAGAATTTATGCAAAACCTAGGGTTTTTTCCTCTTCTGATGATGCGGTTTTGATTTCTTTCAGCCCTACTGGTTAGTATTACTATCTAATTGCTTGTATTCCTTTTTCCGATTAGTACGCTTCGTTTTTCCCTTCAAATCTGTTTGTGCGATTGTAGCAATGGATGACGACGCTACGAATTCATTTCGACGCATGTCCAGCCGCACTCGGAAGGTTGCTCCTAAGATGGTGGCTGCCCTAGCAAGCAGTGACAACCGCACTCAGGTATGACTGAATTAGGTTTTGGTTTGCTTCTTCTTTTTATGAGTTTTTGATGCTGCAATTCATGTACATTTTAGTCTTAGTTTTTATGCTCTTCCAGGCAGCTCTTGCTCGTCTCGAGGCATTGGAAAATGACAATGCGGGAATGGAATTGGTAGAAAATATTGACGACGAGGATGCCTCTCTCGATGATGACGATCTAGGTCAATATGATCTTATTCATTTATTTATTTAATTCAGATGTTGCTTACGCTTTAGTGTATGGTAAAGAAAATTGTATTGTAAGAGATGGCCAGTAACAAAATCTCGCTTGAAACTTATATGTGAAATTCAAAATCGCCATAAATGGTTTCTAAAGTTAAATGGCTATGGAGATTTGGTACTCGTTAATTGCCTAAATTGTTGCAACGGTATGTGAATAGCTAATCAGCCACTAAGGGTGAGATAATATCCTAGGCTCTTTCATGTGGATTTTTCTAGGGATTTTACAATTGCTGAGTGTTGGAGCGATAATGGAGAGGGATGGCATCAGCATTTAAGAGTGCAGCTCTCAGAACTGGAAATTAGTGATTGGGTTGAGCTCAATTCCTTGCCACAAATTGATATCTCTAGTTTGCAAGAAGATAGTAGAAAAAGGAATTTATAGGATTGTAGTTATTATAGTTCGAAATACCCAGAGATTAGATTTCGAGTAAGAAGATAGTTACCACTGTTTATGAAACCAAAGAACTATTTTCTGAGTTATTTGTAGTTGTAACTCCTTTTTTCCCCTTAAATTCCAAGCAAGTTGCAGTTCTTTTGTTGCCTATATAGGCTTTGAGTGGGTTGATATCTCATTACTTCTCCTTCTAGACCTCCTTTTCACACACTTTTGTGTTTTAATGGAAAAACCACCCTGAAAATGAATTTCCATTTCCAAGGAATAATAGAACCTGTCAAACTTAAATTCTTTTTCTTGCTTCTATAACATACTTGCATTTTTTTTTTTTTTTTGAAGAAACAATTTCATTGATATATGAAATTACAAGGAGCCCATAAAAGGGAGTACAAAAGCTCATAGATGGGTTACAAAAGGCACTTCCAATTGGAAAGGAGGGAAGTGTAGTTATAGTAAAGAAAAGTAGGAGAAGTTTTACACCTAGATATAGCTTTAAACACTATAGCATCAAAAAAACGATCAAATGATTGTGACTTGTCAATGAAGATCCTTTGATTTCATTCACCCCATGTAGTCCACAGAAAGACTCGAATGAAATTTGTCCAAAGCTGTTCCTTTATGTTTTTGAAGGGGTGTCTCATTAAGGTGGCCTCAAGGAGAAGTTTAGGGTCATTTGGTAATGCTGTGGACCAACCAAAAGTCAAGAGGATGACATTCCAAAATTCAGATGCAAAAGTACAGGAAGTGAGAGATGTTGTTGAGATTCCATGCTATTCTTGCAAATGATACACCATTGTGGAGAAATAGCCACAAAGGGGAGTCTTCTTTGTAGCTTATCGTTGGTACTGATGGCTTGGTGACTAAGTTCCCAAAGGAAGAAATTCACTTTTTTAGGGCAGTTTCCCTTCCAGATAATGTTGTATAGGCTAGTTTGTGGTGCTTGGTTGCTGTGTGTGAGGTCCTTTGTGAGGGAGCTGGTGGAAAAAGAACCGTTTGTTTCTAGTTTCCAGTAAACACCATCCCTATCTGTTGTTAAATGAATCTCTGATAGCCTAAAATTAAGATCAGCCCATTCAATTATCTCATCGTCTTTAAGGTTCCGCCTTAATCCCAAATTCCAGCAAGCTGTAGATTCGTCCCAGATATCAGATATTGGGGTGTCCTTTCTTGTTGATAAAGCGAAAAGGAGGGGGAAGGATTGTTGAAGAGGCAAACTATTCAGCCAAGGGTGATCCCAAAAGGAAATATTCCTTCCATTTCCGATTTTAAAGGCCAACCGGTCAAAAATCAAATTTTGCATCTTTCTAATGGCAGCCCATGGGCTTTTAGCAGAAGCTTGTGATGTAGAGATAGGTTTGAGGTTCCATGATGCTTTACCAAATTTTACCTCGATCACGTTCCTCCAAAGAGATGTTTCCTCTGTAATGAATCTCCATATCCATTTTGCAAGGAGGGTTCTGTTTTTCAGCTTCATATTTGCAATCCCTAAGCCCCCCATATGGATTTGTTTCTGTATGGTGTCTCTTCTGATGAGATGCAGTCCACTACTGTCTTTGATACCCTTCCACATAAATCTTGTGTAGATGCTGTCCAATGTATGTGCTACTTTTGATGGCAAAGGGAAGAGGGAAAGATAGTAAGTAGGGAGGTTCGATAAAGTGCCTTGGATGAGAGTATGTCTACCGCCTTTGGAGAGATAGGAGGATTTCCATGATAGGAGACGTTTCTGAATTTTCTCAATCATTGGGTCCCAAAAAGAGAATTTTCTCAATCATTGGGTCCCAAAAAGAGAGTGACTAGTGCTTACCATGAAGGGGTAGTCCAAGGTATGTGGTCGGCCAAGTCCCCAATTTACAAGCAAATTTGGATTGAAGAGGAGTCAGTTCATCCTTTCCAAGATTTATCCCCAAAATTTCTGACTTTTGGTGATTTATGTTTAGCCCCGATGCCTCCTCAAAAAGCCTAATGATGTTGAACATGTTTGTGAGGGAGAGGTTATCATAAGGGGAGAAAAGGATGGTGTCATCAGCAAATTGTAGATGATGAATGGCCAATGAGTTCTTTCCCACATCAAAACCTTTAATAAAGTTGATGTTTGCTGCATGTGTCATAAGTCTACTATAGACATCAACAATCATAATAAATAAAAAGGGAGAGGGGGTCACCTTGACGGAGGCCCCTAGAAGCAGTAAGTTTACCCCGAGGACGGCCATTTATAATGATTGAAAAATTTGTTGTTGAGATACACCCTCAAATCCATTTTCTCCACGTGTGTCTGAAACCCTTGGCTGCAAGAACTTCATCAAGGAAGTCCCAATCCACTTTGTCAAAAGCCTTCTCAATATCAAGCTTGATAACCACTCCTTTTCTCTTTTTTCTGATAACCAAGCTTGATAACATACTTGCATTGATTATACCTTTTGGGAATTGTTTGAAATATAGAGTGTGACTAGTGTTTACCTCGTTCAATCCAGCATACATACAGAAGCGGCAATCGAAGGGCACTAAGCGCAAAACTAGACAGGCAAAAGCACTTGAAGCTAAGAAGGCTCCTAAAACTTTCATGGAGCTTTTGCACGAGGTTAGTATGAATATGAAACATCTTCTGCTCCTATTTCCTGGTCTAAATTGCAACAGAAAGTTGTGTTTCTGTTGACCTACAATATGCATTATTGATTCTTCTTCCGAAAACAGGCAAATTTGGAGTCTCTGCCTCCTTATGTTCCATCATACTTAAAGGCAGCTGTTGGACCTCCAAGCTCGTCATCCCGCCGCCATTTTTGCACCGTCTGTGGATTTGCTGCTACATATACCTGCATAAGGTGTGGAATGCGCTTTTGTTCATGTCGTTGCCAGAATATACACAATGATACTCGTTGTTTGAAATTTGTTGCCTGA

mRNA sequence

ATGAACAGCTCTGACAGGCCCTCCGACAACGGCATAACGGCCATCGGATCGCCCATGAAACACGGCGCGCTATTGGAACAACATGAGGGAGCCGCCGCCGATCTGCTGCTCCGGCCGCCGGAATTAGTACGGGAGAATCTGCAAAGCTCAGGAGGGATAGCGCCATTCTCTCGCTGCCGCCGTGGCGCTATCTATCCTGAGTTTCATGGGTTCTTCTTGCTTGGCTTTGATGTGAAAAATATATTCGTGTTGGTTGGGAAAGATAGTCTTTGCTGGAAATTGCAAATTCTGATCCGAATCTGTGTTACATTTCAGGCCAAGGGTATTGGGGATGGATTTTGTGGTTGGCCATTAGAGGACACGTGTAGGGTCGGATGCAAAGGAGGATTCTGGGTTGTTGATTCAAATTTAGGGCACAAGGCTAGTAGAATTTATGCAAAACCTAGGGTTTTTTCCTCTTCTGATGATGCGGTTTTGATTTCTTTCAGCCCTACTGCAATGGATGACGACGCTACGAATTCATTTCGACGCATGTCCAGCCGCACTCGGAAGGTTGCTCCTAAGATGGTGGCTGCCCTAGCAAGCAGTGACAACCGCACTCAGGCAGCTCTTGCTCGTCTCGAGGCATTGGAAAATGACAATGCGGGAATGGAATTGGTAGAAAATATTGACGACGAGGATGCCTCTCTCGATGATGACGATCTAGCATACATACAGAAGCGGCAATCGAAGGGCACTAAGCGCAAAACTAGACAGGCAAAAGCACTTGAAGCTAAGAAGGCTCCTAAAACTTTCATGGAGCTTTTGCACGAGGCAAATTTGGAGTCTCTGCCTCCTTATGTTCCATCATACTTAAAGGCAGCTGTTGGACCTCCAAGCTCGTCATCCCGCCGCCATTTTTGCACCGTCTGTGGATTTGCTGCTACATATACCTGCATAAGGTGTGGAATGCGCTTTTGTTCATGTCGTTGCCAGAATATACACAATGATACTCGTTGTTTGAAATTTGTTGCCTGA

Coding sequence (CDS)

ATGAACAGCTCTGACAGGCCCTCCGACAACGGCATAACGGCCATCGGATCGCCCATGAAACACGGCGCGCTATTGGAACAACATGAGGGAGCCGCCGCCGATCTGCTGCTCCGGCCGCCGGAATTAGTACGGGAGAATCTGCAAAGCTCAGGAGGGATAGCGCCATTCTCTCGCTGCCGCCGTGGCGCTATCTATCCTGAGTTTCATGGGTTCTTCTTGCTTGGCTTTGATGTGAAAAATATATTCGTGTTGGTTGGGAAAGATAGTCTTTGCTGGAAATTGCAAATTCTGATCCGAATCTGTGTTACATTTCAGGCCAAGGGTATTGGGGATGGATTTTGTGGTTGGCCATTAGAGGACACGTGTAGGGTCGGATGCAAAGGAGGATTCTGGGTTGTTGATTCAAATTTAGGGCACAAGGCTAGTAGAATTTATGCAAAACCTAGGGTTTTTTCCTCTTCTGATGATGCGGTTTTGATTTCTTTCAGCCCTACTGCAATGGATGACGACGCTACGAATTCATTTCGACGCATGTCCAGCCGCACTCGGAAGGTTGCTCCTAAGATGGTGGCTGCCCTAGCAAGCAGTGACAACCGCACTCAGGCAGCTCTTGCTCGTCTCGAGGCATTGGAAAATGACAATGCGGGAATGGAATTGGTAGAAAATATTGACGACGAGGATGCCTCTCTCGATGATGACGATCTAGCATACATACAGAAGCGGCAATCGAAGGGCACTAAGCGCAAAACTAGACAGGCAAAAGCACTTGAAGCTAAGAAGGCTCCTAAAACTTTCATGGAGCTTTTGCACGAGGCAAATTTGGAGTCTCTGCCTCCTTATGTTCCATCATACTTAAAGGCAGCTGTTGGACCTCCAAGCTCGTCATCCCGCCGCCATTTTTGCACCGTCTGTGGATTTGCTGCTACATATACCTGCATAAGGTGTGGAATGCGCTTTTGTTCATGTCGTTGCCAGAATATACACAATGATACTCGTTGTTTGAAATTTGTTGCCTGA

Protein sequence

MNSSDRPSDNGITAIGSPMKHGALLEQHEGAAADLLLRPPELVRENLQSSGGIAPFSRCRRGAIYPEFHGFFLLGFDVKNIFVLVGKDSLCWKLQILIRICVTFQAKGIGDGFCGWPLEDTCRVGCKGGFWVVDSNLGHKASRIYAKPRVFSSSDDAVLISFSPTAMDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA
Homology
[Close]
BLAST of Moc02g07800 vs. NCBI nr
Match: XP_022148456.1 (SWR1 complex subunit 6 isoform X1 [Momordica charantia] >XP_022148458.1 SWR1 complex subunit 6 isoform X1 [Momordica charantia] >XP_022148459.1 SWR1 complex subunit 6 isoform X1 [Momordica charantia] >XP_022148460.1 SWR1 complex subunit 6 isoform X1 [Momordica charantia] >XP_022148461.1 SWR1 complex subunit 6 isoform X1 [Momordica charantia])

HSP 1 Score: 333.2 bits (853), Expect = 2.6e-87
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0 

Query: 167 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDE 226
           MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDE 60

Query: 227 DASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYLK 286
           DASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYLK
Sbjct: 61  DASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYLK 120

Query: 287 AAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA 339
           AAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA 172

[Close]
BLAST of Moc02g07800 vs. NCBI nr
Match: KAG7010486.1 (SWR1 complex subunit 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330.5 bits (846), Expect = 1.7e-86
Identity = 195/313 (62.30%), Postives = 207/313 (66.13%), Query Frame = 0 

Query: 35  LLLRPPELVRENLQSSGGIAP---------FSRCRRGAIYPEFHGFFLLGFDVKNIFVLV 94
           ++LR P + REN  SSGGIAP         F     GAIYPEFHGFFLL           
Sbjct: 1   MVLRQPAVARENPSSSGGIAPSNKTPPECSFPPPLAGAIYPEFHGFFLL----------- 60

Query: 95  GKDSLCWKLQILIRICVTFQAKGIGDGFCGWPLEDTCRVGCKGGFWVVDSNLGHKASRIY 154
                             F A                                       
Sbjct: 61  ------------------FPA--------------------------------------- 120

Query: 155 AKPRVFSSSDDAVLISFSPTAMDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALA 214
              R F             TAMDDDATNSFRRMSSRTRKVAPKMVAALASSDNR+QAALA
Sbjct: 121 ---RFF-------------TAMDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALA 180

Query: 215 RLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTF 274
           RLEALENDNAG+EL+ENIDDEDASLDDD+ AYIQKRQSKGTKRKTRQAKALEAKKAPKTF
Sbjct: 181 RLEALENDNAGLELIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTF 229

Query: 275 MELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQ 334
           MELLHEA+LESLPP+VPSYLKAAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCSCRCQ
Sbjct: 241 MELLHEASLESLPPHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQ 229

Query: 335 NIHNDTRCLKFVA 339
           NIHNDTRCLKFVA
Sbjct: 301 NIHNDTRCLKFVA 229

[Close]
BLAST of Moc02g07800 vs. NCBI nr
Match: XP_023512985.1 (SWR1 complex subunit 6 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320.5 bits (820), Expect = 1.8e-83
Identity = 164/180 (91.11%), Postives = 174/180 (96.67%), Query Frame = 0 

Query: 159 LISFSPTAMDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGME 218
           L+ F    MDDDATNSFRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+E
Sbjct: 13  LMRFCTVEMDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLE 72

Query: 219 LVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLP 278
           L+ENIDDEDASLDDD+ AYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLP
Sbjct: 73  LIENIDDEDASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLP 132

Query: 279 PYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA 338
           P+VPSYLKAAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCSCRCQNIHNDTRCLKFVA
Sbjct: 133 PHVPSYLKAAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 192

[Close]
BLAST of Moc02g07800 vs. NCBI nr
Match: XP_022943643.1 (SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943644.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943645.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943647.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943648.1 SWR1 complex subunit 6 [Cucurbita moschata] >XP_023512986.1 SWR1 complex subunit 6 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023512987.1 SWR1 complex subunit 6 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.2 bits (814), Expect = 8.8e-83
Identity = 162/172 (94.19%), Postives = 171/172 (99.42%), Query Frame = 0 

Query: 167 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDE 226
           MDDDATNSFRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+EL+ENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 60

Query: 227 DASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYLK 286
           DASLDDD+ AYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPP+VPSYLK
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLK 120

Query: 287 AAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA 339
           AAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCSCRCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 172

[Close]
BLAST of Moc02g07800 vs. NCBI nr
Match: XP_022986949.1 (SWR1 complex subunit 6 [Cucurbita maxima] >XP_022986950.1 SWR1 complex subunit 6 [Cucurbita maxima] >XP_022986952.1 SWR1 complex subunit 6 [Cucurbita maxima])

HSP 1 Score: 317.4 bits (812), Expect = 1.5e-82
Identity = 161/172 (93.60%), Postives = 171/172 (99.42%), Query Frame = 0 

Query: 167 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDE 226
           MDDDATNSFRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+EL+ENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 60

Query: 227 DASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYLK 286
           DASLDDD+ AYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPP+VPSY+K
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYIK 120

Query: 287 AAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA 339
           AAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCSCRCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 172

[Close]
BLAST of Moc02g07800 vs. ExPASy Swiss-Prot
Match: Q9FHW2 (SWR1 complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=SWC6 PE=1 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 3.1e-62
Identity = 126/173 (72.83%), Postives = 150/173 (86.71%), Query Frame = 0 

Query: 167 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDE 226
           M+++ +N  RR+S+RTRKVA KM AAL S+DNRTQAA+ARLEALENDN  +E+++  DDE
Sbjct: 1   MEEEMSN--RRVSNRTRKVATKMAAALTSNDNRTQAAIARLEALENDNGAIEVIDLNDDE 60

Query: 227 DASLD-DDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYL 286
           +ASLD DDDL Y+QK+Q KG+KRKTRQAKALEA+KAPK+F+ELL EANLESLP +VP+YL
Sbjct: 61  EASLDEDDDLGYLQKKQHKGSKRKTRQAKALEARKAPKSFLELLQEANLESLPSHVPTYL 120

Query: 287 KAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA 339
           KAAVGPPSSSSRR+FC+VCG+ A Y C  CGMRFCS RCQNIH DTRC KFVA
Sbjct: 121 KAAVGPPSSSSRRYFCSVCGYIAGYNCCLCGMRFCSIRCQNIHKDTRCQKFVA 171

[Close]
BLAST of Moc02g07800 vs. ExPASy Swiss-Prot
Match: Q54NW0 (Zinc finger HIT domain-containing protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=znhit1 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.9e-14
Identity = 52/159 (32.70%), Postives = 82/159 (51.57%), Query Frame = 0 

Query: 179 SSRTRKVAPKMVAALASSDNRT---QAALARLEALENDNAGMELVENIDDEDASLDDDDL 238
           SS+ +    K     +  D R    +   ARLE+L++DN    +    D+ED   +DD+ 
Sbjct: 14  SSKRKSQISKRYRVTSEEDRRNLKEKVISARLESLDDDNEQQPIGSRGDEEDNDYNDDEN 73

Query: 239 AYIQKRQ-SKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYLKAAVGPPSS 298
             +     +K      R+ K  E K     F ++L ++ LE+ P +VP+Y+ +    PS 
Sbjct: 74  EIVYTTPVNKKRLFIAREKKKNEKKSMNLNFNDVLEKSYLETFPDHVPTYI-SVQSKPSI 133

Query: 299 SSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRC 334
              RHFC++CG+   YTC +C  R+CS +C N HN+TRC
Sbjct: 134 FPPRHFCSICGYIGAYTCKQCSSRYCSIKCFNYHNETRC 171

[Close]
BLAST of Moc02g07800 vs. ExPASy Swiss-Prot
Match: Q8R331 (Zinc finger HIT domain-containing protein 1 OS=Mus musculus OX=10090 GN=Znhit1 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-12
Identity = 53/132 (40.15%), Postives = 68/132 (51.52%), Query Frame = 0 

Query: 206 RLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAK-KAPKT 265
           +LEALENDN         DD  A L        Q      T +K ++ +    K +  K 
Sbjct: 31  QLEALENDNFQ-------DDPHAGLPQLGKRLPQFDDDADTGKKKKKTRGDHFKLRFRKN 90

Query: 266 FMELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRC 325
           F  LL E NL +     P+YL A  GPP S  +R FC VCGF + YTC+ CG R+C+ RC
Sbjct: 91  FQALLEEQNLSASEG--PNYLTACAGPP-SRPQRPFCAVCGFPSPYTCVSCGARYCTVRC 150

Query: 326 QNIHNDTRCLKF 337
              H +TRCLK+
Sbjct: 151 LGTHQETRCLKW 152

[Close]
BLAST of Moc02g07800 vs. ExPASy Swiss-Prot
Match: Q24JY4 (Zinc finger HIT domain-containing protein 1 OS=Bos taurus OX=9913 GN=ZNHIT1 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-11
Identity = 58/162 (35.80%), Postives = 78/162 (48.15%), Query Frame = 0 

Query: 176 RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDL 235
           ++ S R++    + V   A+   R      +LEALENDN         DD  A L     
Sbjct: 4   KKTSVRSQDPGQRRVLDRAARQRRIN---RQLEALENDNFQ-------DDPHAGLPQLGK 63

Query: 236 AYIQKRQSKGTKRKTRQAKALEAK-KAPKTFMELLHEANLESLPPYVPSYLKAAVGPPSS 295
              Q      T +K ++ +    K +  K F  LL E NL       P+YL A  GPP S
Sbjct: 64  RLPQFDDDADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLSVAEG--PNYLTACAGPP-S 123

Query: 296 SSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKF 337
             +R FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Sbjct: 124 RPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKW 152

[Close]
BLAST of Moc02g07800 vs. ExPASy Swiss-Prot
Match: O43257 (Zinc finger HIT domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ZNHIT1 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-11
Identity = 58/162 (35.80%), Postives = 78/162 (48.15%), Query Frame = 0 

Query: 176 RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDL 235
           ++ S R++    + V   A+   R      +LEALENDN         DD  A L     
Sbjct: 4   KKTSVRSQDPGQRRVLDRAARQRRIN---RQLEALENDNFQ-------DDPHAGLPQLGK 63

Query: 236 AYIQKRQSKGTKRKTRQAKALEAK-KAPKTFMELLHEANLESLPPYVPSYLKAAVGPPSS 295
              Q      T +K ++ +    K +  K F  LL E NL       P+YL A  GPP S
Sbjct: 64  RLPQFDDDADTGKKKKKTRGDHFKLRFRKNFQALLEEQNLSVAEG--PNYLTACAGPP-S 123

Query: 296 SSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKF 337
             +R FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Sbjct: 124 RPQRPFCAVCGFPSPYTCVSCGARYCTVRCLGTHQETRCLKW 152

[Close]
BLAST of Moc02g07800 vs. ExPASy TrEMBL
Match: A0A6J1D2Z0 (SWR1 complex subunit 6 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017095 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 1.3e-87
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0 

Query: 167 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDE 226
           MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDE 60

Query: 227 DASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYLK 286
           DASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYLK
Sbjct: 61  DASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYLK 120

Query: 287 AAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA 339
           AAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA 172

[Close]
BLAST of Moc02g07800 vs. ExPASy TrEMBL
Match: A0A6J1FTL5 (SWR1 complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111448349 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 4.3e-83
Identity = 162/172 (94.19%), Postives = 171/172 (99.42%), Query Frame = 0 

Query: 167 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDE 226
           MDDDATNSFRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+EL+ENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 60

Query: 227 DASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYLK 286
           DASLDDD+ AYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPP+VPSYLK
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYLK 120

Query: 287 AAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA 339
           AAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCSCRCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 172

[Close]
BLAST of Moc02g07800 vs. ExPASy TrEMBL
Match: A0A6J1JHH9 (SWR1 complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111484534 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 7.3e-83
Identity = 161/172 (93.60%), Postives = 171/172 (99.42%), Query Frame = 0 

Query: 167 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDE 226
           MDDDATNSFRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+EL+ENIDDE
Sbjct: 1   MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRSQAALARLEALENDNAGLELIENIDDE 60

Query: 227 DASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYLK 286
           DASLDDD+ AYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEA+LESLPP+VPSY+K
Sbjct: 61  DASLDDDEQAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEASLESLPPHVPSYIK 120

Query: 287 AAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA 339
           AAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCSCRCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGVRFCSCRCQNIHNDTRCLKFVA 172

[Close]
BLAST of Moc02g07800 vs. ExPASy TrEMBL
Match: A0A1S3CKL9 (SWR1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103501880 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 2.6e-80
Identity = 161/172 (93.60%), Postives = 167/172 (97.09%), Query Frame = 0 

Query: 167 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDE 226
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGME+VENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMEVVENIDDE 60

Query: 227 DASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYLK 286
           DASLDDDD AYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPP+VPSY K
Sbjct: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYFK 120

Query: 287 AAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA 339
           AAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]
BLAST of Moc02g07800 vs. ExPASy TrEMBL
Match: A0A0A0KH15 (HIT-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G181510 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 2.6e-80
Identity = 161/172 (93.60%), Postives = 168/172 (97.67%), Query Frame = 0 

Query: 167 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDE 226
           MDDD+TN FRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAG+E+VENIDDE
Sbjct: 1   MDDDSTNPFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGVEVVENIDDE 60

Query: 227 DASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYLK 286
           DASLDDDD AYI KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPP+VPSYLK
Sbjct: 61  DASLDDDDQAYI-KRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPHVPSYLK 120

Query: 287 AAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA 339
           AAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCS RCQNIHNDTRCLKFVA
Sbjct: 121 AAVGPPSSTSRRHFCTVCGFAASYTCIRCGIRFCSSRCQNIHNDTRCLKFVA 171

[Close]
BLAST of Moc02g07800 vs. TAIR 10
Match: AT5G37055.1 (HIT-type Zinc finger family protein )

HSP 1 Score: 240.4 bits (612), Expect = 2.2e-63
Identity = 126/173 (72.83%), Postives = 150/173 (86.71%), Query Frame = 0 

Query: 167 MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDE 226
           M+++ +N  RR+S+RTRKVA KM AAL S+DNRTQAA+ARLEALENDN  +E+++  DDE
Sbjct: 1   MEEEMSN--RRVSNRTRKVATKMAAALTSNDNRTQAAIARLEALENDNGAIEVIDLNDDE 60

Query: 227 DASLD-DDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLESLPPYVPSYL 286
           +ASLD DDDL Y+QK+Q KG+KRKTRQAKALEA+KAPK+F+ELL EANLESLP +VP+YL
Sbjct: 61  EASLDEDDDLGYLQKKQHKGSKRKTRQAKALEARKAPKSFLELLQEANLESLPSHVPTYL 120

Query: 287 KAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA 339
           KAAVGPPSSSSRR+FC+VCG+ A Y C  CGMRFCS RCQNIH DTRC KFVA
Sbjct: 121 KAAVGPPSSSSRRYFCSVCGYIAGYNCCLCGMRFCSIRCQNIHKDTRCQKFVA 171

The following BLAST results are available for this feature:
BLAST of Moc02g07800 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022148456.12.6e-87100.00SWR1 complex subunit 6 isoform X1 [Momordica charantia] >XP_022148458.1 SWR1 com... [more]
KAG7010486.11.7e-8662.30SWR1 complex subunit 6, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023512985.11.8e-8391.11SWR1 complex subunit 6 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022943643.18.8e-8394.19SWR1 complex subunit 6 [Cucurbita moschata] >XP_022943644.1 SWR1 complex subunit... [more]
XP_022986949.11.5e-8293.60SWR1 complex subunit 6 [Cucurbita maxima] >XP_022986950.1 SWR1 complex subunit 6... [more]
BLAST of Moc02g07800 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FHW23.1e-6272.83SWR1 complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=SWC6 PE=1 SV=1[more]
Q54NW06.9e-1432.70Zinc finger HIT domain-containing protein 1 homolog OS=Dictyostelium discoideum ... [more]
Q8R3311.7e-1240.15Zinc finger HIT domain-containing protein 1 OS=Mus musculus OX=10090 GN=Znhit1 P... [more]
Q24JY41.4e-1135.80Zinc finger HIT domain-containing protein 1 OS=Bos taurus OX=9913 GN=ZNHIT1 PE=2... [more]
O432571.4e-1135.80Zinc finger HIT domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ZNHIT1 PE... [more]
BLAST of Moc02g07800 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D2Z01.3e-87100.00SWR1 complex subunit 6 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017095... [more]
A0A6J1FTL54.3e-8394.19SWR1 complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111448349 PE=4 SV=1[more]
A0A6J1JHH97.3e-8393.60SWR1 complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111484534 PE=4 SV=1[more]
A0A1S3CKL92.6e-8093.60SWR1 complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103501880 PE=4 SV=1[more]
A0A0A0KH152.6e-8093.60HIT-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G181510 PE... [more]
BLAST of Moc02g07800 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G37055.12.2e-6372.83HIT-type Zinc finger family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 193..213
NoneNo IPR availablePANTHERPTHR13093:SF1BNACNNG31940D PROTEINcoord: 167..338
IPR007529Zinc finger, HIT-typePFAMPF04438zf-HITcoord: 297..325
e-value: 2.4E-9
score: 36.9
IPR007529Zinc finger, HIT-typePROSITEPS51083ZF_HITcoord: 301..333
score: 9.387759
IPR039723Vps71/ZNHIT1PANTHERPTHR13093ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 1coord: 167..338

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc02g07800.1Moc02g07800.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043486 histone exchange
biological_process GO:0006338 chromatin remodeling
cellular_component GO:0000812 Swr1 complex
molecular_function GO:0031491 nucleosome binding