Moc01g21270 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc01g21270
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTransducin/WD40 repeat-like superfamily protein, putative
Locationchr1: 14844759 .. 14845426 (+)
RNA-Seq ExpressionMoc01g21270
SyntenyMoc01g21270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAGCATAAGCAATTGGTTTGTGCTTTGAAAACAGAAGGAACAGCGAGAGGCAATCTTTGGCGGGAAAGAGAAATGGAGGGAGGAGGCGGAGATGGAGATTTTAGTCCACGCGCCACCGTAGAAGACATACAGAGACGGCTGCTCCGACCTTCCTCGCTTCACTCTCCTCTGCCGACGCCGTCAATCTCGTTATTCTACTTCCTCTAATAATTTCACTCAGTAATGTTTTGAATCTTCTCGAGGCCTGAATTTTTATGAGTTCTGTTGTTTGATTCTAGGTTTTCTCGTGGCAAGGATCCTCAAAGCCGAAATTCGTTGCAATTAGAAGCGAAAGAAGGAGAAACCGTGAGCAAGAAGAAGAAGAAACTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCCTTTACTTCGAAGATCGGTCGTGCAAAGAAGGTTCCTAAGATGACGCCGAAGAAAGAGGTTGAGGATTTCTTATGGCCTGTCGACGAATTGAGGATGCTGATGGAGGACTCAGAGGTTGGAAAGGAGAAAATTGATACTGTTTATCTTAATACTGACTCCGATAATCTAGTAGAAAACGATGAAGACGGATCGGATATTAAATTCTCTACTCCGTTCCAAAAGTTTGAGCAGACTGCTTTGATACTTTTCGAATTATGA

mRNA sequence

ATGGCTTCCAGCATAAGCAATTGGTTTTCTCGTGGCAAGGATCCTCAAAGCCGAAATTCGTTGCAATTAGAAGCGAAAGAAGGAGAAACCGTGAGCAAGAAGAAGAAGAAACTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCCTTTACTTCGAAGATCGGTCGTGCAAAGAAGGTTCCTAAGATGACGCCGAAGAAAGAGGTTGAGGATTTCTTATGGCCTGTCGACGAATTGAGGATGCTGATGGAGGACTCAGAGGTTGGAAAGGAGAAAATTGATACTGTTTATCTTAATACTGACTCCGATAATCTAGTAGAAAACGATGAAGACGGATCGGATATTAAATTCTCTACTCCGTTCCAAAAGTTTGAGCAGACTGCTTTGATACTTTTCGAATTATGA

Coding sequence (CDS)

ATGGCTTCCAGCATAAGCAATTGGTTTTCTCGTGGCAAGGATCCTCAAAGCCGAAATTCGTTGCAATTAGAAGCGAAAGAAGGAGAAACCGTGAGCAAGAAGAAGAAGAAACTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCCTTTACTTCGAAGATCGGTCGTGCAAAGAAGGTTCCTAAGATGACGCCGAAGAAAGAGGTTGAGGATTTCTTATGGCCTGTCGACGAATTGAGGATGCTGATGGAGGACTCAGAGGTTGGAAAGGAGAAAATTGATACTGTTTATCTTAATACTGACTCCGATAATCTAGTAGAAAACGATGAAGACGGATCGGATATTAAATTCTCTACTCCGTTCCAAAAGTTTGAGCAGACTGCTTTGATACTTTTCGAATTATGA

Protein sequence

MASSISNWFSRGKDPQSRNSLQLEAKEGETVSKKKKKLEDYLDPVLLSAFTSKIGRAKKVPKMTPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVYLNTDSDNLVENDEDGSDIKFSTPFQKFEQTALILFEL
Homology
BLAST of Moc01g21270 vs. NCBI nr
Match: XP_022143722.1 (uncharacterized protein LOC111013563 [Momordica charantia])

HSP 1 Score: 245.4 bits (625), Expect = 2.9e-61
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query: 9   FSRGKDPQSRNSLQLEAKEGETVSKKKKKLEDYLDPVLLSAFTSKIGRAKKVPKMTPKKE 68
           FSRGKDPQSRNSLQLEAKEGETVSKKKKKLEDYLDPVLLSAFTSKIGRAKKVPKMTPKKE
Sbjct: 40  FSRGKDPQSRNSLQLEAKEGETVSKKKKKLEDYLDPVLLSAFTSKIGRAKKVPKMTPKKE 99

Query: 69  VEDFLWPVDELRMLMEDSEVGKEKIDTVYLNTDSDNLVENDEDGSDIKFSTPFQKFEQTA 128
           VEDFLWPVDELRMLMEDSEVGKEKIDTVYLNTDSDNLVENDEDGSDIKFSTPFQKFEQTA
Sbjct: 100 VEDFLWPVDELRMLMEDSEVGKEKIDTVYLNTDSDNLVENDEDGSDIKFSTPFQKFEQTA 159

Query: 129 LILFEL 135
           LILFEL
Sbjct: 160 LILFEL 165

BLAST of Moc01g21270 vs. NCBI nr
Match: XP_023518840.1 (uncharacterized protein LOC111782239 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.8 bits (434), Expect = 4.0e-39
Identity = 97/137 (70.80%), Postives = 107/137 (78.10%), Query Frame = 0

Query: 9   FSRGKDPQSRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAFTSKIGRA 68
           FSRGKD Q RNS Q            EAKEGET S +K+KLEDYLDPVLLSA +SKI RA
Sbjct: 38  FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETAS-RKRKLEDYLDPVLLSAVSSKISRA 97

Query: 69  KKVPKMTPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVYLNTDSDNLVENDEDGSDIKF 128
           +KVPKMT K+EV DF WPV ELRMLM+DS VGK KI+TV L  DSDNL ENDE+G D+KF
Sbjct: 98  QKVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTENDEEG-DVKF 157

Query: 129 STPFQKFEQTALILFEL 135
           STPFQKFEQTAL+LFEL
Sbjct: 158 STPFQKFEQTALVLFEL 172

BLAST of Moc01g21270 vs. NCBI nr
Match: XP_022962693.1 (uncharacterized protein LOC111463108 [Cucurbita moschata])

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-37
Identity = 94/137 (68.61%), Postives = 107/137 (78.10%), Query Frame = 0

Query: 9   FSRGKDPQSRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAFTSKIGRA 68
           FSRGKD Q RNS Q            EAKEGET +++K+KLEDYLDPVLLSA +SKI RA
Sbjct: 38  FSRGKDVQGRNSSQFEANAMGLYRKQEAKEGET-ARRKRKLEDYLDPVLLSAVSSKISRA 97

Query: 69  KKVPKMTPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVYLNTDSDNLVENDEDGSDIKF 128
           +KVPKM  K+EV DF WPV ELRMLM+DS VGK KI+TV L  DSDNL EN+E+G D+KF
Sbjct: 98  QKVPKMKVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTENNEEG-DVKF 157

Query: 129 STPFQKFEQTALILFEL 135
           STPFQKFEQTAL+LFEL
Sbjct: 158 STPFQKFEQTALVLFEL 172

BLAST of Moc01g21270 vs. NCBI nr
Match: XP_022972790.1 (uncharacterized protein LOC111471294 isoform X1 [Cucurbita maxima])

HSP 1 Score: 164.5 bits (415), Expect = 6.4e-37
Identity = 94/137 (68.61%), Postives = 104/137 (75.91%), Query Frame = 0

Query: 9   FSRGKDPQSRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAFTSKIGRA 68
           FSRGKD Q RNS Q            EAKEGET S +K+KLEDYLDPVLLSA +SKI RA
Sbjct: 38  FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETAS-RKRKLEDYLDPVLLSAVSSKISRA 97

Query: 69  KKVPKMTPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVYLNTDSDNLVENDEDGSDIKF 128
           +KVPKMT K+EV DF WPV ELRMLM+DS VGK K +TV L  DSD L ENDE+G D+K 
Sbjct: 98  QKVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKTNTVNLGNDSDYLTENDEEG-DVKI 157

Query: 129 STPFQKFEQTALILFEL 135
           STPFQKFEQTAL+LFEL
Sbjct: 158 STPFQKFEQTALVLFEL 172

BLAST of Moc01g21270 vs. NCBI nr
Match: XP_038877636.1 (uncharacterized protein LOC120069887 isoform X1 [Benincasa hispida])

HSP 1 Score: 164.5 bits (415), Expect = 6.4e-37
Identity = 92/137 (67.15%), Postives = 105/137 (76.64%), Query Frame = 0

Query: 9   FSRGKDPQSRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAFTSKIGRA 68
           FSRGK  Q R S Q            EAK+GET S KK+KLEDYLDPVLLSA +SKI R 
Sbjct: 39  FSRGKAAQGRISSQFEAKYMRLYQNREAKKGETAS-KKRKLEDYLDPVLLSAVSSKISRM 98

Query: 69  KKVPKMTPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVYLNTDSDNLVENDEDGSDIKF 128
           +K+PKMT K+EV DF WPV+ELRMLMED+ VGKEKID V L  D+DNL+EN+EDG D+KF
Sbjct: 99  EKIPKMTVKREVRDFEWPVNELRMLMEDTTVGKEKIDAVNLGNDTDNLIENNEDG-DVKF 158

Query: 129 STPFQKFEQTALILFEL 135
           STPFQKFE TAL+LFEL
Sbjct: 159 STPFQKFEHTALVLFEL 173

BLAST of Moc01g21270 vs. ExPASy TrEMBL
Match: A0A6J1CRN4 (uncharacterized protein LOC111013563 OS=Momordica charantia OX=3673 GN=LOC111013563 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-61
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query: 9   FSRGKDPQSRNSLQLEAKEGETVSKKKKKLEDYLDPVLLSAFTSKIGRAKKVPKMTPKKE 68
           FSRGKDPQSRNSLQLEAKEGETVSKKKKKLEDYLDPVLLSAFTSKIGRAKKVPKMTPKKE
Sbjct: 40  FSRGKDPQSRNSLQLEAKEGETVSKKKKKLEDYLDPVLLSAFTSKIGRAKKVPKMTPKKE 99

Query: 69  VEDFLWPVDELRMLMEDSEVGKEKIDTVYLNTDSDNLVENDEDGSDIKFSTPFQKFEQTA 128
           VEDFLWPVDELRMLMEDSEVGKEKIDTVYLNTDSDNLVENDEDGSDIKFSTPFQKFEQTA
Sbjct: 100 VEDFLWPVDELRMLMEDSEVGKEKIDTVYLNTDSDNLVENDEDGSDIKFSTPFQKFEQTA 159

Query: 129 LILFEL 135
           LILFEL
Sbjct: 160 LILFEL 165

BLAST of Moc01g21270 vs. ExPASy TrEMBL
Match: A0A6J1HFI5 (uncharacterized protein LOC111463108 OS=Cucurbita moschata OX=3662 GN=LOC111463108 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 6.3e-38
Identity = 94/137 (68.61%), Postives = 107/137 (78.10%), Query Frame = 0

Query: 9   FSRGKDPQSRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAFTSKIGRA 68
           FSRGKD Q RNS Q            EAKEGET +++K+KLEDYLDPVLLSA +SKI RA
Sbjct: 38  FSRGKDVQGRNSSQFEANAMGLYRKQEAKEGET-ARRKRKLEDYLDPVLLSAVSSKISRA 97

Query: 69  KKVPKMTPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVYLNTDSDNLVENDEDGSDIKF 128
           +KVPKM  K+EV DF WPV ELRMLM+DS VGK KI+TV L  DSDNL EN+E+G D+KF
Sbjct: 98  QKVPKMKVKREVRDFEWPVAELRMLMDDSTVGKGKINTVNLGNDSDNLTENNEEG-DVKF 157

Query: 129 STPFQKFEQTALILFEL 135
           STPFQKFEQTAL+LFEL
Sbjct: 158 STPFQKFEQTALVLFEL 172

BLAST of Moc01g21270 vs. ExPASy TrEMBL
Match: A0A6J1I9M7 (uncharacterized protein LOC111471294 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471294 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.1e-37
Identity = 94/137 (68.61%), Postives = 104/137 (75.91%), Query Frame = 0

Query: 9   FSRGKDPQSRNSLQL-----------EAKEGETVSKKKKKLEDYLDPVLLSAFTSKIGRA 68
           FSRGKD Q RNS Q            EAKEGET S +K+KLEDYLDPVLLSA +SKI RA
Sbjct: 38  FSRGKDVQGRNSSQFEANAMGLYRKREAKEGETAS-RKRKLEDYLDPVLLSAVSSKISRA 97

Query: 69  KKVPKMTPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVYLNTDSDNLVENDEDGSDIKF 128
           +KVPKMT K+EV DF WPV ELRMLM+DS VGK K +TV L  DSD L ENDE+G D+K 
Sbjct: 98  QKVPKMTVKREVRDFEWPVAELRMLMDDSTVGKGKTNTVNLGNDSDYLTENDEEG-DVKI 157

Query: 129 STPFQKFEQTALILFEL 135
           STPFQKFEQTAL+LFEL
Sbjct: 158 STPFQKFEQTALVLFEL 172

BLAST of Moc01g21270 vs. ExPASy TrEMBL
Match: A0A5A7STW4 (Putative Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00230 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.9e-34
Identity = 84/131 (64.12%), Postives = 98/131 (74.81%), Query Frame = 0

Query: 9   FSRGKDPQSRNSLQLEA-----KEGETVSKKKKKLEDYLDPVLLSAFTSKIGRAKKVPKM 68
           FS GK+ Q RNS Q EA          +S K++KLEDYLDPVLLSA +SKI R +K+P++
Sbjct: 47  FSLGKNAQDRNSSQFEANYMRLSRSREISSKERKLEDYLDPVLLSAISSKINRFEKIPRI 106

Query: 69  TPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVYLNTDSDNLVENDEDGSDIKFSTPFQK 128
           T K+EV DF W VDELRM  ED+ VGKEKID V L  DSDNL+END DG D+KFSTPFQK
Sbjct: 107 TVKREVRDFEWHVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDG-DVKFSTPFQK 166

Query: 129 FEQTALILFEL 135
           FEQ AL+LFEL
Sbjct: 167 FEQNALVLFEL 176

BLAST of Moc01g21270 vs. ExPASy TrEMBL
Match: A0A1S3BHM2 (uncharacterized protein LOC103490160 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490160 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.9e-34
Identity = 84/131 (64.12%), Postives = 98/131 (74.81%), Query Frame = 0

Query: 9   FSRGKDPQSRNSLQLEA-----KEGETVSKKKKKLEDYLDPVLLSAFTSKIGRAKKVPKM 68
           FS GK+ Q RNS Q EA          +S K++KLEDYLDPVLLSA +SKI R +K+P++
Sbjct: 47  FSLGKNAQDRNSSQFEANYMRLSRSREISSKERKLEDYLDPVLLSAISSKINRFEKIPRI 106

Query: 69  TPKKEVEDFLWPVDELRMLMEDSEVGKEKIDTVYLNTDSDNLVENDEDGSDIKFSTPFQK 128
           T K+EV DF W VDELRM  ED+ VGKEKID V L  DSDNL+END DG D+KFSTPFQK
Sbjct: 107 TVKREVRDFEWHVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDG-DVKFSTPFQK 166

Query: 129 FEQTALILFEL 135
           FEQ AL+LFEL
Sbjct: 167 FEQNALVLFEL 176

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022143722.12.9e-61100.00uncharacterized protein LOC111013563 [Momordica charantia][more]
XP_023518840.14.0e-3970.80uncharacterized protein LOC111782239 [Cucurbita pepo subsp. pepo][more]
XP_022962693.11.3e-3768.61uncharacterized protein LOC111463108 [Cucurbita moschata][more]
XP_022972790.16.4e-3768.61uncharacterized protein LOC111471294 isoform X1 [Cucurbita maxima][more]
XP_038877636.16.4e-3767.15uncharacterized protein LOC120069887 isoform X1 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CRN41.4e-61100.00uncharacterized protein LOC111013563 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1HFI56.3e-3868.61uncharacterized protein LOC111463108 OS=Cucurbita moschata OX=3662 GN=LOC1114631... [more]
A0A6J1I9M73.1e-3768.61uncharacterized protein LOC111471294 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A5A7STW41.9e-3464.12Putative Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. ma... [more]
A0A1S3BHM21.9e-3464.12uncharacterized protein LOC103490160 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc01g21270.1Moc01g21270.1mRNA