Moc01g20270 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc01g20270
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionjosephin-like protein
Locationchr1: 14173514 .. 14173903 (-)
RNA-Seq ExpressionMoc01g20270
SyntenyMoc01g20270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAAAAGCAGCAGCCGGCGAGTGAGTTTCAGTTCAGGTTCCGATCAGCTGCCAGCTGTCCCAAGAAACAAGAAGAGATCTGTTATCACCGTGTTCTGGGCCTTCCGCGTGATTCCGGCCAAATCCGCCGCCAGATTCTCGCCGGAAAGTTTCCTCCGCCGCCTCCGCGCCAACGTGGCCAAAGTTCTCCGATACGTCTCGTTCAAGAAGAGATCTTGTTCGAAGAAAAACTCGTGTGCAAATAATTCAAATTCGAATTTCAACAGATCCCATTCGGTTTCAGATCACTCCATGGAGGATTCTCACCGTGCTGAAGCCGTTAAAGACTGCATCAACTTCTTCAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTTTGA

mRNA sequence

ATGTCAAAAAGCAGCAGCCGGCGAGTGAGTTTCAGTTCAGGTTCCGATCAGCTGCCAGCTGTCCCAAGAAACAAGAAGAGATCTGTTATCACCGTGTTCTGGGCCTTCCGCGTGATTCCGGCCAAATCCGCCGCCAGATTCTCGCCGGAAAGTTTCCTCCGCCGCCTCCGCGCCAACGTGGCCAAAGTTCTCCGATACGTCTCGTTCAAGAAGAGATCTTGTTCGAAGAAAAACTCGTGTGCAAATAATTCAAATTCGAATTTCAACAGATCCCATTCGGTTTCAGATCACTCCATGGAGGATTCTCACCGTGCTGAAGCCGTTAAAGACTGCATCAACTTCTTCAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTTTGA

Coding sequence (CDS)

ATGTCAAAAAGCAGCAGCCGGCGAGTGAGTTTCAGTTCAGGTTCCGATCAGCTGCCAGCTGTCCCAAGAAACAAGAAGAGATCTGTTATCACCGTGTTCTGGGCCTTCCGCGTGATTCCGGCCAAATCCGCCGCCAGATTCTCGCCGGAAAGTTTCCTCCGCCGCCTCCGCGCCAACGTGGCCAAAGTTCTCCGATACGTCTCGTTCAAGAAGAGATCTTGTTCGAAGAAAAACTCGTGTGCAAATAATTCAAATTCGAATTTCAACAGATCCCATTCGGTTTCAGATCACTCCATGGAGGATTCTCACCGTGCTGAAGCCGTTAAAGACTGCATCAACTTCTTCAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTTTGA

Protein sequence

MSKSSSRRVSFSSGSDQLPAVPRNKKRSVITVFWAFRVIPAKSAARFSPESFLRRLRANVAKVLRYVSFKKRSCSKKNSCANNSNSNFNRSHSVSDHSMEDSHRAEAVKDCINFFNSSSSSSSSSSSSV
Homology
BLAST of Moc01g20270 vs. NCBI nr
Match: KGN54361.1 (hypothetical protein Csa_017994 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-22
Identity = 78/123 (63.41%), Postives = 89/123 (72.36%), Query Frame = 0

Query: 4   SSSRRVSFSSGSDQLPAVPRNKKRSVITVFWAFRVIPAKSAARFSPESFLRRLRANVAKV 63
           SS RRVSFS  SDQ  A     ++  I VFW FR+     +ARFSPE FLRRL A +AKV
Sbjct: 6   SSGRRVSFS--SDQAAAAKSRIRKRPIIVFWVFRL---PKSARFSPEKFLRRLGAKMAKV 65

Query: 64  LRYVSFKKRSCSKKNSCA---NNSNSNFNRSHSVSDHSMEDSHRAEAVKDCINFFNSSSS 123
           LRYVS +KRS S  NS +   NN +S FNRSHSVSD SME+SHRAEAVKDCI FFNSS+S
Sbjct: 66  LRYVSLRKRSTSSTNSSSLKNNNGSSKFNRSHSVSD-SMEESHRAEAVKDCIQFFNSSNS 122

BLAST of Moc01g20270 vs. NCBI nr
Match: XP_022950374.1 (josephin-like protein [Cucurbita moschata])

HSP 1 Score: 115.2 bits (287), Expect = 4.3e-22
Identity = 78/127 (61.42%), Postives = 91/127 (71.65%), Query Frame = 0

Query: 4   SSSRRVSFSS--------GSDQLPAVPRNKKRSVITVFWAFRVIPAKSAARFSPESFLRR 63
           SSSRRVSFSS         + +  A PRN+KR +ITVFW FR+     + R  P SFLRR
Sbjct: 6   SSSRRVSFSSDQGAAAATSAAKPAAFPRNRKR-LITVFWVFRL---PKSGRLFPGSFLRR 65

Query: 64  LRANVAKVLRYVSFKKRSCSKKNSCANNSNSNFNRSHSVSDHSMEDSHRAEAVKDCINFF 123
           + A V KVLRYVS +KRS S  +S +  S SNFNRSHSVS+ SME+SHRAEAVKDCINFF
Sbjct: 66  IGAKVVKVLRYVSLRKRSASPASSSSLKSGSNFNRSHSVSE-SMEESHRAEAVKDCINFF 125

BLAST of Moc01g20270 vs. NCBI nr
Match: XP_023518083.1 (uncharacterized protein LOC111781626 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.8 bits (281), Expect = 2.1e-21
Identity = 82/126 (65.08%), Postives = 94/126 (74.60%), Query Frame = 0

Query: 1   MSK-SSSRRVSFSS--GSDQLPAVPRNKKRSVITVFWAFRVIPAKSAARFSPESFLRRLR 60
           MSK  SSR VS  S  G+ +   + RN+KR VITV W FR+     + RFSPESFLRR+ 
Sbjct: 1   MSKIRSSRGVSLRSDEGTAKPTTLQRNRKR-VITVLWVFRL---PKSGRFSPESFLRRVG 60

Query: 61  ANVAKVLRYVSFKKRS-CSKKNSCANNSNSNFNRSHSVSDHSMEDSHRAEAVKDCINFFN 120
           A VAKV+RYVS KKRS CSKK S A    +NFNRSHSVSD SME+SHRAEAVKDCI+FFN
Sbjct: 61  AKVAKVVRYVSLKKRSECSKKASAA----TNFNRSHSVSD-SMEESHRAEAVKDCIHFFN 117

Query: 121 SSSSSS 123
           SSSSS+
Sbjct: 121 SSSSSA 117

BLAST of Moc01g20270 vs. NCBI nr
Match: KAG6595400.1 (hypothetical protein SDJN03_11953, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027410.1 hypothetical protein SDJN02_11422, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.7 bits (278), Expect = 4.8e-21
Identity = 83/127 (65.35%), Postives = 95/127 (74.80%), Query Frame = 0

Query: 1   MSK-SSSRRVSFSS--GSDQLPAVPRNKKRSVITVFWAFRVIPAKSAARFSPESFLRRLR 60
           MSK  SSR VS  S  G+ +  A+ RN+KR VITV W FR+     + RFSPESFLRR+ 
Sbjct: 1   MSKIRSSRGVSLRSDEGTAKPTALQRNRKR-VITVLWVFRL---PKSGRFSPESFLRRVG 60

Query: 61  ANVAKVLRYVSFKKRS-CSKKNSCANNSNSNFNRSHSVSDHSMEDSHRAEAVKDCINFFN 120
           A VAKVLR VS KKRS CSKK S A    +NFNRSHSVSD SME+SHRAEAV+DCI+FFN
Sbjct: 61  AKVAKVLRAVSLKKRSECSKKASAA----TNFNRSHSVSD-SMEESHRAEAVRDCIHFFN 118

Query: 121 SSSSSSS 124
           SSSSSS+
Sbjct: 121 SSSSSSA 118

BLAST of Moc01g20270 vs. NCBI nr
Match: KAG6603596.1 (hypothetical protein SDJN03_04205, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-20
Identity = 79/132 (59.85%), Postives = 93/132 (70.45%), Query Frame = 0

Query: 4   SSSRRVSFSS-------GSDQLPAVPRNKKRSVITVFWAFRVIPAKSAARFSPESFLRRL 63
           SSSRRVSFSS        + +  A PRN+KR +ITVFW FR+     + R  P SFLRR+
Sbjct: 6   SSSRRVSFSSDQGAAAASAAKPAAFPRNRKR-LITVFWVFRL---PKSGRLFPGSFLRRI 65

Query: 64  RANVAKVLRYVSFKKR-----SCSKKNSCAN-NSNSNFNRSHSVSDHSMEDSHRAEAVKD 123
            A V KVLRYVS +KR     SCS  +S ++  S SNFNRSHSVS+ SME+SHRAEAVKD
Sbjct: 66  GAKVVKVLRYVSLRKRSASPASCSSSSSSSSLKSGSNFNRSHSVSE-SMEESHRAEAVKD 125

BLAST of Moc01g20270 vs. ExPASy TrEMBL
Match: A0A0A0L2K7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308510 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.2e-23
Identity = 78/123 (63.41%), Postives = 89/123 (72.36%), Query Frame = 0

Query: 4   SSSRRVSFSSGSDQLPAVPRNKKRSVITVFWAFRVIPAKSAARFSPESFLRRLRANVAKV 63
           SS RRVSFS  SDQ  A     ++  I VFW FR+     +ARFSPE FLRRL A +AKV
Sbjct: 6   SSGRRVSFS--SDQAAAAKSRIRKRPIIVFWVFRL---PKSARFSPEKFLRRLGAKMAKV 65

Query: 64  LRYVSFKKRSCSKKNSCA---NNSNSNFNRSHSVSDHSMEDSHRAEAVKDCINFFNSSSS 123
           LRYVS +KRS S  NS +   NN +S FNRSHSVSD SME+SHRAEAVKDCI FFNSS+S
Sbjct: 66  LRYVSLRKRSTSSTNSSSLKNNNGSSKFNRSHSVSD-SMEESHRAEAVKDCIQFFNSSNS 122

BLAST of Moc01g20270 vs. ExPASy TrEMBL
Match: A0A6J1GFL9 (josephin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111453490 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 78/127 (61.42%), Postives = 91/127 (71.65%), Query Frame = 0

Query: 4   SSSRRVSFSS--------GSDQLPAVPRNKKRSVITVFWAFRVIPAKSAARFSPESFLRR 63
           SSSRRVSFSS         + +  A PRN+KR +ITVFW FR+     + R  P SFLRR
Sbjct: 6   SSSRRVSFSSDQGAAAATSAAKPAAFPRNRKR-LITVFWVFRL---PKSGRLFPGSFLRR 65

Query: 64  LRANVAKVLRYVSFKKRSCSKKNSCANNSNSNFNRSHSVSDHSMEDSHRAEAVKDCINFF 123
           + A V KVLRYVS +KRS S  +S +  S SNFNRSHSVS+ SME+SHRAEAVKDCINFF
Sbjct: 66  IGAKVVKVLRYVSLRKRSASPASSSSLKSGSNFNRSHSVSE-SMEESHRAEAVKDCINFF 125

BLAST of Moc01g20270 vs. ExPASy TrEMBL
Match: A0A6J1IJN3 (uncharacterized protein LOC111477703 OS=Cucurbita maxima OX=3661 GN=LOC111477703 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-20
Identity = 77/128 (60.16%), Postives = 93/128 (72.66%), Query Frame = 0

Query: 4   SSSRRVSFSS------GSDQLPAVPRNKKRSVITVFWAFRVIPAKSAARFSPESFLRRLR 63
           SSSRRVSFSS       + +  A PRN+KR +ITVFW F++     + R  P SFLRR+ 
Sbjct: 6   SSSRRVSFSSDQGAAAAAAKPAAFPRNRKR-LITVFWVFQL---PKSGRLFPGSFLRRIG 65

Query: 64  ANVAKVLRYVSFKKRSCSKKNSCANNSN----SNFNRSHSVSDHSMEDSHRAEAVKDCIN 122
           A V KVLRYVS +KRS S   SC+++S+    SNFNRSHSVS+ SME+SHRAEAVKDCIN
Sbjct: 66  AKVVKVLRYVSLRKRSASPA-SCSSSSSLKSGSNFNRSHSVSE-SMEESHRAEAVKDCIN 125

BLAST of Moc01g20270 vs. ExPASy TrEMBL
Match: A0A6J1AQZ4 (josephin-like protein OS=Herrania umbratica OX=108875 GN=LOC110420321 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 59/138 (42.75%), Postives = 84/138 (60.87%), Query Frame = 0

Query: 1   MSKSSSRRVSFSSGSDQLPAV----------PRNKKRSVITVFWAFRVIPAKSAARFSPE 60
           MS+ +S+RVSFS   ++ P +           R K+R V+   + FR++    ++RFSP 
Sbjct: 1   MSRRTSKRVSFSPDVNERPTILLKHGGSTCRTRGKRRRVVAGIFTFRLV---RSSRFSPA 60

Query: 61  SFLRRLRANVAKVLRYVSFKKRSCSKKNSCANNSNSNFNRSHSVSDHSMEDSHRAEAVKD 120
             LRRL A VA+ LR+VS  + S S K    ++S+SN  RS S+++    DSHRAEA++D
Sbjct: 61  RLLRRLGAKVARALRFVSMGRNSNSHK---VSSSSSNLARSRSLAESI--DSHRAEAIED 120

Query: 121 CINFFNSSSSSSSSSSSS 129
           CI F NSSSS S S+S S
Sbjct: 121 CIEFLNSSSSLSRSNSVS 130

BLAST of Moc01g20270 vs. ExPASy TrEMBL
Match: A0A061EQH2 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021741 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-09
Identity = 58/138 (42.03%), Postives = 84/138 (60.87%), Query Frame = 0

Query: 1   MSKSSSRRVSFSSGSDQLPAV----------PRNKKRSVITVFWAFRVIPAKSAARFSPE 60
           MS+ +S+RVSFS   ++ P +           R  +R V+   + FR++    ++RFSP 
Sbjct: 1   MSRRTSKRVSFSPDVNERPTILLKHGGSTGRTRGNRRRVVAGIFTFRLV---RSSRFSPA 60

Query: 61  SFLRRLRANVAKVLRYVSFKKRSCSKKNSCANNSNSNFNRSHSVSDHSMEDSHRAEAVKD 120
             LRRL A VA+ LR+VS ++ S S K    ++S+SN  RS S+++    DSHRAEA++D
Sbjct: 61  RLLRRLGAKVARALRFVSMRRNSNSHK---VSSSSSNLARSRSLAESI--DSHRAEAIED 120

Query: 121 CINFFNSSSSSSSSSSSS 129
           CI F NSSSS S S+S S
Sbjct: 121 CIEFLNSSSSLSRSNSVS 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN54361.11.5e-2263.41hypothetical protein Csa_017994 [Cucumis sativus][more]
XP_022950374.14.3e-2261.42josephin-like protein [Cucurbita moschata][more]
XP_023518083.12.1e-2165.08uncharacterized protein LOC111781626 [Cucurbita pepo subsp. pepo][more]
KAG6595400.14.8e-2165.35hypothetical protein SDJN03_11953, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603596.11.1e-2059.85hypothetical protein SDJN03_04205, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2K77.2e-2363.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308510 PE=4 SV=1[more]
A0A6J1GFL92.1e-2261.42josephin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111453490 PE=4 SV=1[more]
A0A6J1IJN31.1e-2060.16uncharacterized protein LOC111477703 OS=Cucurbita maxima OX=3661 GN=LOC111477703... [more]
A0A6J1AQZ41.6e-0942.75josephin-like protein OS=Herrania umbratica OX=108875 GN=LOC110420321 PE=4 SV=1[more]
A0A061EQH22.0e-0942.03Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021741 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR34355:SF1JOSEPHIN-LIKE PROTEINcoord: 1..128
NoneNo IPR availablePANTHERPTHR34355JOSEPHIN-LIKE PROTEINcoord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc01g20270.1Moc01g20270.1mRNA