Moc01g19580 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc01g19580
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr1: 13684194 .. 13686511 (-)
RNA-Seq Expression	Moc01g19580
Synteny	Moc01g19580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAAAGAGACTCACTCAGATCAGTCAGATACTCAATTTTTGTTTTATTTTATTTTATATTCTAAATGCTTACGTGGAAGGACATGCTCATTGCCATGTATGCATGTGTAAATTATACAAAAATTAGATGTCGTATGTGTTACATGGAAAGATAATTTACAGATATTACAATTGTTTTTTTCTTTGTATCACGGGTATACCTTATGTTTTGTTTTTTATTTTTTTCTTTTTTCGGGGAATCATATAAATTTTTAAAAAATAGGAACTTGTTTTTTAAACAACAAATGTGAAGATGATATTAAGCCTCCAAGCTTTAATATGGAGCAAGAGGTCTTAATTGTTAGTTATTGGGAAACTCGGATTTATAACATCTTCCATATTTGACTTTGGATTTTTTTACGTAAAATCTCACTCCTTATTTTTTACCCCTTCAATTTTTTAACATTGTAAAAAGACGTATTTGTCATATAGTTAATAAATAAGCATTTATGATATATTAAATTTTCACCTAACTATTCACCAAAATCTAAATTGGTCAAATTCTCAATTATCAATATTTTACATATGCTTTGAACTCCTTGAAGTTTTTAAAATCCTCTCAAACAAATATTGTTTAAAATCCTCTCAAACAAATATTGTTCTCCACGTTGTTTGATCATTGTCCCTACATTATCTAATATCATTATCAGCACATTTTCACTTTTGAAAAGTTGGGCATGTGTTACAACCTACAACTTTTTTACTTTAAAATTGCTTAATTTATTTGGAACATTTCCCTTTTTGACGTCTTTGTATTTATTCAATCTTCTGCTGGAACGGCCGTTTTGAGAAAAAAAAAACCAATGTTTAGTAATTGTCTCGGATCTATACCTGTCCGAGCTTGTATGAAGATTTCACCGGGATTGAATATTCTTCAATCCCGGTGCAATTTTGGTTCAGGACATAATCCGGGACATGTCCCAGACTAATCCTGAACCAAGATATGTCCTGAACCAAGATTGGTCAGGAACGGTCCGGGATGAAGGCTTTTTATGTTTTTATTTTATTTTATCCTTCTTCTTTGTTCGATTTTCAAGGTTGCCAAACATCTCTCATCTTTTTTTTTCTTTTATCTCATATAGTTTTATTCTTTTTACAGGATGCCTCGTGTTTTTATAACATTCGGTGGAGATTGGAATGATAGTGAAAAGGATTATGTTAGTGGTCGTATGAGAGGATTGACAATGGATACTACAACCACGTACGAAGAATTTCTAGGTCACGTGTATAGATTGAGTAATATAAACCCTACAGTTTGATATTATAATTAGACGTGTATATCATTTTGAACCCAAAATTTGTGTAATGAAGATAACTAATGACAATAACCTGAGTTTTTTTTTTTAACTGGTGAAGATGTATTTGAATTACCTGTATATATATCTACCGTGTAAAAGCAGGAAATGAAACATATATGTTTTCTTTCCCATATTATATAAGCCAACATGTGTTCCTTATTCCTATGCCCACAATTTGTATTCTCCAATTTCAAAGACCCACATTTCTTATACCCTCATTTCCTTCCTCATCATCGAACCCCTCTTCTTTCCAAACCCCATACCCCTCCTACAGGCATGTAGGTCACGATATATCATCTCTAACACCATTGGATTCAGATGTTGTTCCATGTAATCTGGGAGATGACCAGAGTATGTGATTTGGATGCGTCAGGAGTGTGGAATGATAACCAAGAGGTTGATGATGAAAGTGATTAATCATATGATCCGTTGAGAAAGTTAGAAGAAGGAGACGATGAAGCAGAATATTGGAATGAGGTTGACGATGATGATGCACTTGATGAAGAACCTAATGTGTAATAGGTAAACATTGATATTAGTGGCTAGGTTAATGGTATGCAATTGTCTCACCGAAAACCTTGATGCTGAGAAATTGCAAGTCATGGTCTAGTCTTTTGGGACTAACGAAGTAAAGGAGGGTGAAGTATTTTATTCGAAGAAAAAGTTGATTTTGAAAATGCATTTAGTTGCAATGAGGATGAATTCCCAATTTTGAGTAAAAAAATTGACACCATAACTATATGTACTTCGGTGCATTCAACACTAAAGTGAATTAAGTTTATATAATAAAAAAAATCGTACCTTTGACATTTTCTTAAGGTATCTCTGAATACTTTTCAGGACGACTTCAATGCCACCCACTCTATTATCAAGACTCGTCATGATGGCCTCAATAGCACCAACACAATCATCGAGCCTCCTCAACCGTCTACTGATCCTCTTTTTGAAATTCGTCTTCTTCGTCCTCTTGTCTAG

mRNA sequence

ATGAAGAAGAAAGAGACTCACTCAGATCAGATGCCTCGTGTTTTTATAACATTCGGTGGAGATTGGAATGATAGTGAAAAGGATTATGTTAGTGGTCGTATGAGAGGATTGACAATGGATACTACAACCACGTACGAAGAATTTCTAGGTCACGATATATCATCTCTAACACCATTGGATTCAGATGTTGTTCCATGTAATCTGGGAGATGACCAGAAAGAAGGAGACGATGAAGCAGAATATTGGAATGAGGTTGACGATGATGATGCACTTGATGAAGAACCTAATGACGACTTCAATGCCACCCACTCTATTATCAAGACTCGTCATGATGGCCTCAATAGCACCAACACAATCATCGAGCCTCCTCAACCGTCTACTGATCCTCTTTTTGAAATTCGTCTTCTTCGTCCTCTTGTCTAG

Coding sequence (CDS)

ATGAAGAAGAAAGAGACTCACTCAGATCAGATGCCTCGTGTTTTTATAACATTCGGTGGAGATTGGAATGATAGTGAAAAGGATTATGTTAGTGGTCGTATGAGAGGATTGACAATGGATACTACAACCACGTACGAAGAATTTCTAGGTCACGATATATCATCTCTAACACCATTGGATTCAGATGTTGTTCCATGTAATCTGGGAGATGACCAGAAAGAAGGAGACGATGAAGCAGAATATTGGAATGAGGTTGACGATGATGATGCACTTGATGAAGAACCTAATGACGACTTCAATGCCACCCACTCTATTATCAAGACTCGTCATGATGGCCTCAATAGCACCAACACAATCATCGAGCCTCCTCAACCGTCTACTGATCCTCTTTTTGAAATTCGTCTTCTTCGTCCTCTTGTCTAG

Protein sequence

MKKKETHSDQMPRVFITFGGDWNDSEKDYVSGRMRGLTMDTTTTYEEFLGHDISSLTPLDSDVVPCNLGDDQKEGDDEAEYWNEVDDDDALDEEPNDDFNATHSIIKTRHDGLNSTNTIIEPPQPSTDPLFEIRLLRPLV

Homology

[Close]

BLAST of Moc01g19580 vs. NCBI nr
Match: XP_022154947.1 (uncharacterized protein LOC111022090 [Momordica charantia])

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-15
Identity = 65/162 (40.12%), Postives = 75/162 (46.30%), Query Frame = 0


Query: 11  MPRVFITFGGDWNDSEKDYVSGRMRGLTMDTTTTYEEF---------------------- 70
           M RVFITFGG+W DSEKDYV GR +GLT+D+TTTY EF                      
Sbjct: 1   MSRVFITFGGEWKDSEKDYVDGRTKGLTVDSTTTYREFQGQNVPSSCMPTTCIPQFQRPT 60

Query: 71  -------------------------LGHDISSLTPLDSDVVPCNLGDDQ----------- 99
                                    LGHDI+ LTPL+SDVVPCNLGDD+           
Sbjct: 61  DPIPSFPSSSSNPSSSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVPGLWN 120

[Close]

BLAST of Moc01g19580 vs. NCBI nr
Match: XP_022155970.1 (uncharacterized protein LOC111022954 [Momordica charantia])

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-12
Identity = 60/151 (39.74%), Postives = 70/151 (46.36%), Query Frame = 0


Query: 13  RVFITFGGDWNDSEKDYVSGRMRGLTMDTTTT---------------------------- 72
           RVFITFGG+WNDSEKDYV GRMRGLT+D+                               
Sbjct: 37  RVFITFGGEWNDSEKDYVGGRMRGLTVDSQNVSSSCMPIACIPSFQRPTDPIPSFPSSSS 96

Query: 73  ----------YEEFLGHDISSLTPLDSDVVPCNLGDDQ---------------------- 99
                     Y   LGHDI+ LTPL+SDVVPCNLGDD+                      
Sbjct: 97  NPSSSQQPHLYYGHLGHDIAGLTPLESDVVPCNLGDDRVCVWNMPGLWNDNQDESDESYD 156

[Close]

BLAST of Moc01g19580 vs. ExPASy TrEMBL
Match: A0A6J1DN26 (uncharacterized protein LOC111022090 OS=Momordica charantia OX=3673 GN=LOC111022090 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 9.2e-16
Identity = 65/162 (40.12%), Postives = 75/162 (46.30%), Query Frame = 0


Query: 11  MPRVFITFGGDWNDSEKDYVSGRMRGLTMDTTTTYEEF---------------------- 70
           M RVFITFGG+W DSEKDYV GR +GLT+D+TTTY EF                      
Sbjct: 1   MSRVFITFGGEWKDSEKDYVDGRTKGLTVDSTTTYREFQGQNVPSSCMPTTCIPQFQRPT 60

Query: 71  -------------------------LGHDISSLTPLDSDVVPCNLGDDQ----------- 99
                                    LGHDI+ LTPL+SDVVPCNLGDD+           
Sbjct: 61  DPIPSFPSSSSNPSSSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVPGLWN 120

[Close]

BLAST of Moc01g19580 vs. ExPASy TrEMBL
Match: A0A6J1DP00 (uncharacterized protein LOC111022954 OS=Momordica charantia OX=3673 GN=LOC111022954 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.6e-13
Identity = 60/151 (39.74%), Postives = 70/151 (46.36%), Query Frame = 0


Query: 13  RVFITFGGDWNDSEKDYVSGRMRGLTMDTTTT---------------------------- 72
           RVFITFGG+WNDSEKDYV GRMRGLT+D+                               
Sbjct: 37  RVFITFGGEWNDSEKDYVGGRMRGLTVDSQNVSSSCMPIACIPSFQRPTDPIPSFPSSSS 96

Query: 73  ----------YEEFLGHDISSLTPLDSDVVPCNLGDDQ---------------------- 99
                     Y   LGHDI+ LTPL+SDVVPCNLGDD+                      
Sbjct: 97  NPSSSQQPHLYYGHLGHDIAGLTPLESDVVPCNLGDDRVCVWNMPGLWNDNQDESDESYD 156

The following BLAST results are available for this feature:

BLAST of Moc01g19580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154947.1	1.9e-15	40.12	uncharacterized protein LOC111022090 [Momordica charantia]	[more]
XP_022155970.1	1.2e-12	39.74	uncharacterized protein LOC111022954 [Momordica charantia]	[more]

BLAST of Moc01g19580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc01g19580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DN26	9.2e-16	40.12	uncharacterized protein LOC111022090 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DP00	5.6e-13	39.74	uncharacterized protein LOC111022954 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Moc01g19580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc01g19580.1	Moc01g19580.1	mRNA