Moc01g17260 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc01g17260
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionPentatricopeptide repeat-containing protein
Locationchr1: 11602184 .. 11604607 (+)
RNA-Seq ExpressionMoc01g17260
SyntenyMoc01g17260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCTGCTGGCTTGAAACCCAGTGTTGGAATTTTAAAACACTTAATTGATGCATACACCCATTTGGGTGCTCTGCAATTAGGGAAAGCAATACATTGTTACCTTATCCAACTCAACGGATTGGAGATCTATAATACGCAGTTAGGAACATCTATCCTTAACATGTATGTAAGATGTGGAAGCATGGTTTCTGCTATAAAATGTTTTGATTTAATCTTAATCAAAGATGTTGTGGCATGGATTTCCAATTGAAGGATATGGTGCTCATGGACTAGGTTTCGACGCCCTCAATCTGTTCCTTCAAATGATGAGAGAAGAAGTGACCCCAAATAATGTCACTTTCTTAAGTCTGTTATCTGCTTGCAGCCACTCTGGCCTTGTAAGCGAGGGCTGTCAAATCTTTTATTCAATGAGGTCAAGATTCAACATCAAGCCCGAATTAGAACACTATACTTGTCTTATTGATCTTTTGAGTAGATCAACAAGAGTAAGGGAGGCCTTTTCAATTATATTGAGAATGACAAATTTTCATGATGGCAGGATATGGGGTGCTCTTATGGGGGCGTCCTGAGTGTATGGAGACAATAAAATCGCTAACTATGCTGCACACAGGCTTCTTGAATTAGAACCTGATAATGTAGGCTATTATACTTTGTTGAGCAATGCACAGGCTATTGTTGGGCAGTGGCATGAAGTTGAAAAATTACGAAGTGTTGTGAATGAGAAAGATCTTGCCAAGAAACCGGGTTGGAGCTTCATTGGGTTAAAAGGAATAATTCATGGATTTGTTTCAGGAGATAGATCACACGATAAGACCAAGGAGATTTATGATTTATTGGTATATCTTAATAGGATAAAATAGCATAGGATATCTGTTTATCTGAGTAACAATAATCGGTCAAGGAGGCGTTCTATGAAACTTGGAATTCTTTTGGCATCTTTATGCTCCCCAGATGAAACACGAGCATATTGGTTAACCTGCCATGCGACAATAGCATGTCATGAAATCATTTGAAATGATTGAAAGACCAGTTGGGAGCGAGCATTTGGACTATGAAAGAAATCAGAAGAATAAATATTCTTTGAAGTTTGAAGCATGAACAGATTGAAGGGAGAAACCTAATTAGTTTTGATGGTCAGGTAATGCTTTTCATTCTCTCTAAATTGTGGTTTACGGTCATTGTGTTTCATGTATTCTCCAGTAATGTGAATCATCTATTAACTTGCAAATGCATCATACTAGTTTTTCATGCAAAAATCATGTATACTGTTCCCTCAAATCGCCCCCTGCAACTGATCTGACAGGTTCCTTATTTCGTGGCTGTATCTATAATATGAAAATGTTTCGAAGAAGATCAAGTTTTTCGGGCGGTAGGTCTTTCTTGGGAAAGTTAATACCTTGGATCGTATTCAAAGGATGTGGAGTTTTTGCATGGGTCCGCAGTGGTGTGTTCTCTGTAAGAGTGCCTCGGAGAACCTTGATCATTTACTGTGGACTTGTCAGTTTGTTCAGGATCTTTGGCATTGTTTCTTTTTGTGCTTTGGTATTTCTTGGGTCCGTGCCAGGAATTGTAGGGCTATGATGGAGGAGGTGCTTTTATTCCCCCCTTTTCAGGATAAGGGTCGTTTTTTGTGGCAGACTTGCTTTCTAGCTATGTTATGGGGTATTTGGCTCGAGAGGAATCATAGAGTGTTTAAGGGGTGGAAAAATTTGTGGATTATGTTTGGACATTGTTAGATTTAACACTTCGTTATGGGGCTCGGTTTCTCATCTCTTTTGTAATTATTCACTTGGCCCATCTCTTTTGTAATTATTCACTTGGCCTTATTCTTTTGGATTGGAGCCCTTTTCTTTAGGGGGCTTCCTCTTGCTGGGCTGTTTTTTGTATGCCCTTTTTAAGCTTTTTGGTGTATATTTTGTATCCTTTTCATTTTTCTCAATGAAAGTATGGTTTCGTATAAAAAAAAAATGAAAATGTTCAGAGAAATGTGTTAAAATTTGAATTTGGAACTGCAAACCATGTTTAGCAGACAAAGAATCCCTTTAAATCATAATGTAGGTTTATTTAAAGAACAATCAACCTGATTATGGTTTCACATCCATGCTTTGGCAGCTAAATTTCCTTTCTGCATGAGCTGTACATGTAAAAGAGCAAAAAATAACGTTGAAAGAATGAGTACAAATTCCATTATAACCACCTACCTATTATACCTATGATATTAATATGCTACACGTCTCTAGACAAGCAAATACTAGAAGGTCATCTAATTGTCTTGACTCCTGAGAGATTAGTCGGGATAGGTATAAGTTGACCCAAACGAAAGACAAGTAACCAAAATAATGAAAAAATCCTTATTGTTACTGTGTCATTGATGGGTGATTTTGTTTCTACAGGTGATGGTGCTCAGGCCTTAGTGTGA

mRNA sequence

ATGCAAGCTGCTGGCTTGAAACCCAGTGTTGGAATTTTAAAACACTTAATTGATGCATACACCCATTTGGGTGCTCTGCAATTAGGGAAAGCAATACATTGTTACCTTATCCAACTCAACGGATTGGAGATCTATAATACGCAGTTAGGAACATCTATCCTTAACATGTATATGTTGTGGCATGGATTTCCAATTGAAGGATATGGTGCTCATGGACTAGGTTTCGACGCCCTCAATCTGTTCCTTCAAATGATGAGAGAAGAAGTGACCCCAAATAATGTCACTTTCTTAAGTCTGTTATCTGCTTGCAGCCACTCTGGCCTTGATATGGGGTGCTCTTATGGGGGCGTCCTGAGTGCTATTGTTGGGCAGTGGCATGAAGTTGAAAAATTACGAAGTGTTGTGAATGAGAAAGATCTTGCCAAGAAACCGGACAAGCAAATACTAGAAGGTCATCTAATTGTCTTGACTCCTGAGAGATTAGTCGGGATAGGTGATGGTGCTCAGGCCTTAGTGTGA

Coding sequence (CDS)

ATGCAAGCTGCTGGCTTGAAACCCAGTGTTGGAATTTTAAAACACTTAATTGATGCATACACCCATTTGGGTGCTCTGCAATTAGGGAAAGCAATACATTGTTACCTTATCCAACTCAACGGATTGGAGATCTATAATACGCAGTTAGGAACATCTATCCTTAACATGTATATGTTGTGGCATGGATTTCCAATTGAAGGATATGGTGCTCATGGACTAGGTTTCGACGCCCTCAATCTGTTCCTTCAAATGATGAGAGAAGAAGTGACCCCAAATAATGTCACTTTCTTAAGTCTGTTATCTGCTTGCAGCCACTCTGGCCTTGATATGGGGTGCTCTTATGGGGGCGTCCTGAGTGCTATTGTTGGGCAGTGGCATGAAGTTGAAAAATTACGAAGTGTTGTGAATGAGAAAGATCTTGCCAAGAAACCGGACAAGCAAATACTAGAAGGTCATCTAATTGTCTTGACTCCTGAGAGATTAGTCGGGATAGGTGATGGTGCTCAGGCCTTAGTGTGA

Protein sequence

MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYMLWHGFPIEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSLLSACSHSGLDMGCSYGGVLSAIVGQWHEVEKLRSVVNEKDLAKKPDKQILEGHLIVLTPERLVGIGDGAQALV
Homology
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BLAST of Moc01g17260 vs. NCBI nr
Match: XP_022153922.1 (pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Momordica charantia])

HSP 1 Score: 196.4 bits (498), Expect = 2.0e-46
Identity = 125/257 (48.64%), Postives = 132/257 (51.36%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMY--- 60
           MQAAGLKPSVGILKHLIDAYTHLG LQLGKAIHCYLI+LNGLEIYNTQLGTSILNMY   
Sbjct: 329 MQAAGLKPSVGILKHLIDAYTHLGVLQLGKAIHCYLIRLNGLEIYNTQLGTSILNMYVRC 388

Query: 61  ------------------MLWHGFPIEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSL 120
                             + W    IEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSL
Sbjct: 389 GSLVSAIKCFDLILIKDVVAWTSM-IEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSL 448

Query: 121 LSACSHSGL-DMGCS--------------------------------------------- 151
           LSACSHSGL   GC                                              
Sbjct: 449 LSACSHSGLVSEGCQIFYSMRSRFNINPDLEHYTCFVDLLSRSTRVREAFAIILRMTNFR 508

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BLAST of Moc01g17260 vs. NCBI nr
Match: XP_038883286.1 (pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 166.4 bits (420), Expect = 2.2e-37
Identity = 111/257 (43.19%), Postives = 124/257 (48.25%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMY--- 60
           MQAAGLKPSVG+LKHLIDAY +LGALQLGKAIHCYLI++ GLEI NT L TS+LNMY   
Sbjct: 329 MQAAGLKPSVGVLKHLIDAYAYLGALQLGKAIHCYLIRIYGLEICNTHLETSLLNMYGRC 388

Query: 61  ------------------MLWHGFPIEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSL 120
                             ++W    I+ YGAHGLG DALNLF QMM EEV PN+VTFLSL
Sbjct: 389 GSIASARKCFDLILTKDVVVWTSM-IDVYGAHGLGIDALNLFHQMMSEEVAPNSVTFLSL 448

Query: 121 LSACSHSGL-DMGCS--------------------------------------------- 151
           LSACSHSGL   GC                                              
Sbjct: 449 LSACSHSGLVSEGCEIFYSMRSSFDIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTNLR 508

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BLAST of Moc01g17260 vs. NCBI nr
Match: XP_008457591.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Cucumis melo] >XP_008457593.1 PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Cucumis melo] >XP_016902177.1 PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Cucumis melo] >XP_016902178.1 PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Cucumis melo] >XP_016902179.1 PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Cucumis melo] >XP_016902180.1 PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-36
Identity = 109/257 (42.41%), Postives = 123/257 (47.86%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMY--- 60
           MQ AGLKPSVGILKHLIDAY +LGALQLGKAIHC+LI++ GL + NT+L TS+LNMY   
Sbjct: 329 MQVAGLKPSVGILKHLIDAYAYLGALQLGKAIHCHLIRIYGLVVCNTRLETSVLNMYVRC 388

Query: 61  ------------------MLWHGFPIEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSL 120
                             + W    IEGYGAHGLG DALNLF QM  EEVTPNNVTFLSL
Sbjct: 389 GSIASARKCFDLILIKDVVAWTSM-IEGYGAHGLGIDALNLFHQMTSEEVTPNNVTFLSL 448

Query: 121 LSACSHSGL-DMGCS--------------------------------------------- 151
           LSACSHSGL   GC                                              
Sbjct: 449 LSACSHSGLVSEGCGIFYSMRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTNLC 508

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BLAST of Moc01g17260 vs. NCBI nr
Match: XP_023526509.1 (pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.8 bits (408), Expect = 5.4e-36
Identity = 109/257 (42.41%), Postives = 120/257 (46.69%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMY--- 60
           MQAAGLKPS+GILKHLIDAY HLGALQLG+ IHCYLI++ GLEI NT L TS++NMY   
Sbjct: 394 MQAAGLKPSLGILKHLIDAYAHLGALQLGRGIHCYLIRIYGLEICNTHLETSLMNMYVRC 453

Query: 61  ------------------MLWHGFPIEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSL 120
                             + W    IEGYGAHG G +ALNL+  MM EEV PN+VTFLSL
Sbjct: 454 GSIASARKCFDLIIVKDVVAWTSM-IEGYGAHGQGINALNLYHHMMSEEVAPNSVTFLSL 513

Query: 121 LSACSHSGL-DMGCS--------------------------------------------- 151
           LSACSHSGL   GC                                              
Sbjct: 514 LSACSHSGLVSEGCEIFYSMRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTNLC 573

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BLAST of Moc01g17260 vs. NCBI nr
Match: KAG7033612.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-35
Identity = 107/257 (41.63%), Postives = 121/257 (47.08%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMY--- 60
           MQAAGLKPS+GILKHLIDAY HLGALQLG+ IHCYLI++ GLEI NT L TS++NMY   
Sbjct: 382 MQAAGLKPSLGILKHLIDAYAHLGALQLGRGIHCYLIRICGLEICNTHLETSLMNMYVRC 441

Query: 61  ------------------MLWHGFPIEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSL 120
                             + W    IEGYGAHG G +ALNL+  MM EEV PN+VTFLSL
Sbjct: 442 GSIASARKCFDLIIVKDVVAWTSM-IEGYGAHGQGINALNLYHHMMSEEVAPNSVTFLSL 501

Query: 121 LSACSHSGL-DMGCS--------------------------------------------- 151
           LSACSHSGL   GC                                              
Sbjct: 502 LSACSHSGLVSEGCEIFYSMRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTNLC 561

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BLAST of Moc01g17260 vs. ExPASy Swiss-Prot
Match: Q9SX45 (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.1e-15
Identity = 45/129 (34.88%), Postives = 70/129 (54.26%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYM-- 60
           M  + + P+   L  ++ A  H+GAL  G+ +HCY+I+ N +EI NT  GT+++++Y+  
Sbjct: 297 MLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIK-NSIEI-NTTAGTTLIDLYVKC 356

Query: 61  -------------------LWHGFPIEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSL 109
                               W    I G+ AHG   DA +LF  M+   V+PN VTF+++
Sbjct: 357 GCLEEAILVFERLHEKNVYTWTAM-INGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAV 416

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BLAST of Moc01g17260 vs. ExPASy Swiss-Prot
Match: Q9FLZ9 (Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E16 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13
Identity = 45/133 (33.83%), Postives = 67/133 (50.38%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMY--- 60
           M+   ++P++  L  L+ AY  L  L+    IHCYL +   +   +    T ++++Y   
Sbjct: 411 MRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMS--SLDAATGLVHVYSKC 470

Query: 61  ----------------------MLWHGFPIEGYGAHGLGFDALNLFLQMMREEVTPNNVT 109
                                 +LW G  I GYG HG G +AL +F++M+R  VTPN +T
Sbjct: 471 GTLESAHKIFNGIQEKHKSKDVVLW-GALISGYGMHGDGHNALQVFMEMVRSGVTPNEIT 530

[Close]
BLAST of Moc01g17260 vs. ExPASy Swiss-Prot
Match: Q56X05 (Pentatricopeptide repeat-containing protein At1g06143 OS=Arabidopsis thaliana OX=3702 GN=EMB1444 PE=2 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-13
Identity = 43/128 (33.59%), Postives = 69/128 (53.91%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMY--- 60
           M   G+ P    +  +I A  HLG L++GK +H Y +Q NG  + +  +G+++++MY   
Sbjct: 278 MMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQ-NGF-VLDVYIGSALVDMYSKC 337

Query: 61  -------MLWHGFP----------IEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSLL 109
                  +++   P          IEG  AHG   +AL +F +M  E V PN VTF+S+ 
Sbjct: 338 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVF 397

[Close]
BLAST of Moc01g17260 vs. ExPASy Swiss-Prot
Match: Q9LUS3 (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E91 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.6e-12
Identity = 43/129 (33.33%), Postives = 70/129 (54.26%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMY--- 60
           M+ +G++P +  L  ++ A +HL AL  G + H Y + ++G  + NT +  ++++MY   
Sbjct: 400 MRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCV-VHGYAV-NTSICNALMDMYTKC 459

Query: 61  ------------------MLWHGFPIEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSL 109
                             + W+   + G+G HGLG +AL+LF  M    V P+ VT L++
Sbjct: 460 GKLDVAKRVFDTMHKRDIVSWNTM-LFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAI 519

[Close]
BLAST of Moc01g17260 vs. ExPASy Swiss-Prot
Match: P93011 (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-11
Identity = 44/130 (33.85%), Postives = 66/130 (50.77%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMY--- 60
           M+ +G +P       L+ A    GA+ LG  +H Y+I   GL++ N +LGT+++N+Y   
Sbjct: 199 MRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIIS-EGLDL-NVKLGTALINLYSRC 258

Query: 61  ------------------MLWHGFPIEGYGAHGLGFDALNLFLQMMRE-EVTPNNVTFLS 109
                               W    I  YG HG G  A+ LF +M  +    PNNVTF++
Sbjct: 259 GDVGKAREVFDKMKETNVAAWTAM-ISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVA 318

[Close]
BLAST of Moc01g17260 vs. ExPASy TrEMBL
Match: A0A6J1DKA1 (pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111021322 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 9.5e-47
Identity = 125/257 (48.64%), Postives = 132/257 (51.36%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMY--- 60
           MQAAGLKPSVGILKHLIDAYTHLG LQLGKAIHCYLI+LNGLEIYNTQLGTSILNMY   
Sbjct: 329 MQAAGLKPSVGILKHLIDAYTHLGVLQLGKAIHCYLIRLNGLEIYNTQLGTSILNMYVRC 388

Query: 61  ------------------MLWHGFPIEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSL 120
                             + W    IEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSL
Sbjct: 389 GSLVSAIKCFDLILIKDVVAWTSM-IEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSL 448

Query: 121 LSACSHSGL-DMGCS--------------------------------------------- 151
           LSACSHSGL   GC                                              
Sbjct: 449 LSACSHSGLVSEGCQIFYSMRSRFNINPDLEHYTCFVDLLSRSTRVREAFAIILRMTNFR 508

[Close]
BLAST of Moc01g17260 vs. ExPASy TrEMBL
Match: A0A1S3C6I7 (pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497256 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 8.9e-37
Identity = 109/257 (42.41%), Postives = 123/257 (47.86%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMY--- 60
           MQ AGLKPSVGILKHLIDAY +LGALQLGKAIHC+LI++ GL + NT+L TS+LNMY   
Sbjct: 329 MQVAGLKPSVGILKHLIDAYAYLGALQLGKAIHCHLIRIYGLVVCNTRLETSVLNMYVRC 388

Query: 61  ------------------MLWHGFPIEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSL 120
                             + W    IEGYGAHGLG DALNLF QM  EEVTPNNVTFLSL
Sbjct: 389 GSIASARKCFDLILIKDVVAWTSM-IEGYGAHGLGIDALNLFHQMTSEEVTPNNVTFLSL 448

Query: 121 LSACSHSGL-DMGCS--------------------------------------------- 151
           LSACSHSGL   GC                                              
Sbjct: 449 LSACSHSGLVSEGCGIFYSMRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTNLC 508

[Close]
BLAST of Moc01g17260 vs. ExPASy TrEMBL
Match: A0A6J1HTH3 (pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467326 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 7.6e-36
Identity = 106/257 (41.25%), Postives = 122/257 (47.47%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMY--- 60
           MQAAGLKPS+GILKHLIDAY HLGALQLG+ IHCYLI+++GLEI NT L TS++NMY   
Sbjct: 330 MQAAGLKPSLGILKHLIDAYAHLGALQLGRGIHCYLIRIHGLEICNTHLETSLMNMYVRC 389

Query: 61  ------------------MLWHGFPIEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSL 120
                             + W    IEGYGAHG G +ALNL+  MM EEV PN+VTFLSL
Sbjct: 390 GSIASARKCFDLIIVKDVVAWTSM-IEGYGAHGQGINALNLYHHMMSEEVAPNSVTFLSL 449

Query: 121 LSACSHSGL-DMGCS--------------------------------------------- 151
           LSACSHSGL   GC                                              
Sbjct: 450 LSACSHSGLVSEGCEIFYSMRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTNLC 509

[Close]
BLAST of Moc01g17260 vs. ExPASy TrEMBL
Match: A0A6J1EYH5 (pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439622 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 3.8e-35
Identity = 105/257 (40.86%), Postives = 120/257 (46.69%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMY--- 60
           MQAAGLKPS+GILKHLIDAY HLGALQLG+ IHCYLI++ GLEI NT L TS++NMY   
Sbjct: 330 MQAAGLKPSLGILKHLIDAYAHLGALQLGRGIHCYLIRIYGLEICNTHLETSLMNMYVRC 389

Query: 61  ------------------MLWHGFPIEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSL 120
                             + W    IEGYG+HG G +ALNL+  MM EEV PN+VTFLSL
Sbjct: 390 GSIASARKCFDLIIVKDVVAWTSM-IEGYGSHGQGINALNLYHHMMSEEVAPNSVTFLSL 449

Query: 121 LSACSHSGL-DMGCS--------------------------------------------- 151
           LSACSHSGL   GC                                              
Sbjct: 450 LSACSHSGLVSEGCEIFYSMRSRFNIKPDLEHYTCFVDLLSRSTRVREAFAIILRMTNLC 509

[Close]
BLAST of Moc01g17260 vs. ExPASy TrEMBL
Match: A0A7J7DVD4 (Pentatricopeptide repeat-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW03G00597 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.7e-24
Identity = 75/137 (54.74%), Postives = 87/137 (63.50%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQL----NGLEIYNTQLGTSILNM 60
           MQAAGLKP   IL+ LIDAYT+LGALQLGK++  YLI+      G +  N QL TSILNM
Sbjct: 303 MQAAGLKPRTAILRCLIDAYTNLGALQLGKSVQAYLIRTVICRTGED--NVQLHTSILNM 362

Query: 61  Y--------------------MLWHGFPIEGYGAHGLGFDALNLFLQMMREEVTPNNVTF 113
           Y                    M+     IEGYG HGLG +ALN F QM++E +TPN+VTF
Sbjct: 363 YTRCGSIRSARLCFNHMTIKDMVTWTSMIEGYGIHGLGCEALNTFHQMVKEGMTPNDVTF 422

[Close]
BLAST of Moc01g17260 vs. TAIR 10
Match: AT1G50270.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 5.0e-16
Identity = 45/129 (34.88%), Postives = 70/129 (54.26%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMYM-- 60
           M  + + P+   L  ++ A  H+GAL  G+ +HCY+I+ N +EI NT  GT+++++Y+  
Sbjct: 297 MLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIK-NSIEI-NTTAGTTLIDLYVKC 356

Query: 61  -------------------LWHGFPIEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSL 109
                               W    I G+ AHG   DA +LF  M+   V+PN VTF+++
Sbjct: 357 GCLEEAILVFERLHEKNVYTWTAM-INGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAV 416

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BLAST of Moc01g17260 vs. TAIR 10
Match: AT5G39350.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-14
Identity = 45/133 (33.83%), Postives = 67/133 (50.38%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMY--- 60
           M+   ++P++  L  L+ AY  L  L+    IHCYL +   +   +    T ++++Y   
Sbjct: 411 MRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMS--SLDAATGLVHVYSKC 470

Query: 61  ----------------------MLWHGFPIEGYGAHGLGFDALNLFLQMMREEVTPNNVT 109
                                 +LW G  I GYG HG G +AL +F++M+R  VTPN +T
Sbjct: 471 GTLESAHKIFNGIQEKHKSKDVVLW-GALISGYGMHGDGHNALQVFMEMVRSGVTPNEIT 530

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BLAST of Moc01g17260 vs. TAIR 10
Match: AT1G06150.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-14
Identity = 43/128 (33.59%), Postives = 69/128 (53.91%), Query Frame = 0 

Query: 1    MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMY--- 60
            M   G+ P    +  +I A  HLG L++GK +H Y +Q NG  + +  +G+++++MY   
Sbjct: 1023 MMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQ-NGF-VLDVYIGSALVDMYSKC 1082

Query: 61   -------MLWHGFP----------IEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSLL 109
                   +++   P          IEG  AHG   +AL +F +M  E V PN VTF+S+ 
Sbjct: 1083 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVF 1142

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BLAST of Moc01g17260 vs. TAIR 10
Match: AT3G16610.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 71.6 bits (174), Expect = 6.8e-13
Identity = 43/129 (33.33%), Postives = 70/129 (54.26%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMY--- 60
           M+ +G++P +  L  ++ A +HL AL  G + H Y + ++G  + NT +  ++++MY   
Sbjct: 400 MRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCV-VHGYAV-NTSICNALMDMYTKC 459

Query: 61  ------------------MLWHGFPIEGYGAHGLGFDALNLFLQMMREEVTPNNVTFLSL 109
                             + W+   + G+G HGLG +AL+LF  M    V P+ VT L++
Sbjct: 460 GKLDVAKRVFDTMHKRDIVSWNTM-LFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAI 519

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BLAST of Moc01g17260 vs. TAIR 10
Match: AT2G33760.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-12
Identity = 44/130 (33.85%), Postives = 66/130 (50.77%), Query Frame = 0 

Query: 1   MQAAGLKPSVGILKHLIDAYTHLGALQLGKAIHCYLIQLNGLEIYNTQLGTSILNMY--- 60
           M+ +G +P       L+ A    GA+ LG  +H Y+I   GL++ N +LGT+++N+Y   
Sbjct: 199 MRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIIS-EGLDL-NVKLGTALINLYSRC 258

Query: 61  ------------------MLWHGFPIEGYGAHGLGFDALNLFLQMMRE-EVTPNNVTFLS 109
                               W    I  YG HG G  A+ LF +M  +    PNNVTF++
Sbjct: 259 GDVGKAREVFDKMKETNVAAWTAM-ISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVA 318

The following BLAST results are available for this feature:
BLAST of Moc01g17260 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022153922.12.0e-4648.64pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Momor... [more]
XP_038883286.12.2e-3743.19pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Benin... [more]
XP_008457591.11.8e-3642.41PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic ... [more]
XP_023526509.15.4e-3642.41pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cucur... [more]
KAG7033612.11.2e-3541.63Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... [more]
BLAST of Moc01g17260 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SX457.1e-1534.88Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana OX... [more]
Q9FLZ92.3e-1333.83Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana OX... [more]
Q56X055.1e-1333.59Pentatricopeptide repeat-containing protein At1g06143 OS=Arabidopsis thaliana OX... [more]
Q9LUS39.6e-1233.33Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana OX... [more]
P930113.6e-1133.85Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX... [more]
BLAST of Moc01g17260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DKA19.5e-4748.64pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like OS=Mom... [more]
A0A1S3C6I78.9e-3742.41pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Cucumis ... [more]
A0A6J1HTH37.6e-3641.25pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like OS=Cuc... [more]
A0A6J1EYH53.8e-3540.86pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like OS=Cuc... [more]
A0A7J7DVD41.7e-2454.74Pentatricopeptide repeat-containing protein OS=Tripterygium wilfordii OX=458696 ... [more]
BLAST of Moc01g17260 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G50270.15.0e-1634.88Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G39350.11.6e-1433.83Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G06150.13.6e-1433.59basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT3G16610.16.8e-1333.33pentatricopeptide (PPR) repeat-containing protein [more]
AT2G33760.12.6e-1233.85Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..152
e-value: 1.1E-10
score: 43.5
NoneNo IPR availablePANTHERPTHR47928:SF75REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 1..58
coord: 65..108
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 1..58
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 65..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc01g17260.1Moc01g17260.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding