MS028807 (gene) Bitter gourd (TR) v1

Overview


Name	MS028807
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE
Location	scaffold207: 209963 .. 210166 (+)
RNA-Seq Expression	MS028807
Synteny	MS028807

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAAGTTTTATAGCGTGTTCTCCGGCGTGGTTCTGGTGCTGTGCACGGCGTCGCTGGTGGTGCTGCCGCTGGTGCTGCCGCCGCTTCCTCCGCCGCCATTGCCGGTCCTTCTTGTGCCTGTTTTTATTTTGGGGATTCTCCTTTTCTTCGCTCTCTCCACTTCTCAACTCCCCGATTCCCCCCTCATTTACTCCACCTGA

mRNA sequence

ATGGTCAAGTTTTATAGCGTGTTCTCCGGCGTGGTTCTGGTGCTGTGCACGGCGTCGCTGGTGGTGCTGCCGCTGGTGCTGCCGCCGCTTCCTCCGCCGCCATTGCCGGTCCTTCTTGTGCCTGTTTTTATTTTGGGGATTCTCCTTTTCTTCGCTCTCTCCACTTCTCAACTCCCCGATTCCCCCCTCATTTACTCCACCTGA

Coding sequence (CDS)

ATGGTCAAGTTTTATAGCGTGTTCTCCGGCGTGGTTCTGGTGCTGTGCACGGCGTCGCTGGTGGTGCTGCCGCTGGTGCTGCCGCCGCTTCCTCCGCCGCCATTGCCGGTCCTTCTTGTGCCTGTTTTTATTTTGGGGATTCTCCTTTTCTTCGCTCTCTCCACTTCTCAACTCCCCGATTCCCCCCTCATTTACTCCACCTGA

Protein sequence

MVKFYSVFSGVVLVLCTASLVVLPLVLPPLPPPPLPVLLVPVFILGILLFFALSTSQLPDSPLIYST

Homology

[Close]

BLAST of MS028807 vs. NCBI nr
Match: RQO91248.1 (hypothetical protein POPTR_006G037801 [Populus trichocarpa])

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-06
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 1  MVKFYSVFSGVVLVLCTASLVVLPLVLPPLPPPPLPVLLVPVFILGILLFFALSTSQLPD 60
          M +++   + +V+V+ T  L+VLPLVLPPLPPPPL +L VPVFI+ +L+F A S S+LPD
Sbjct: 1  MFRYFKSIAVMVMVVLTVFLLVLPLVLPPLPPPPLVLLFVPVFIMSLLVFLAFSPSKLPD 60

Query: 61 SP 63
          +P
Sbjct: 61 TP 62

[Close]

BLAST of MS028807 vs. NCBI nr
Match: ERN18453.1 (hypothetical protein AMTR_s00190p00037690 [Amborella trichopoda])

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-06
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MVKFYSVFSGVVLVLCTASLVVLPLVLPPLPPPPLPVLLVPVFILGILLFFALSTSQL 59
           MV+++S+ S VVL+  TASLVVLPLVLPPLPPPP  +LL+PV IL +LLFFALS+S +
Sbjct: 53  MVRYFSLGSMVVLLGLTASLVVLPLVLPPLPPPPFMLLLLPVGILMVLLFFALSSSDI 110

[Close]

BLAST of MS028807 vs. NCBI nr
Match: ONH94911.1 (hypothetical protein PRUPE_7G039200 [Prunus persica])

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-06
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 1  MVKFYSVFSGVVLVLCTASLVVLPLVLPPLPPPPLPVLLVPVFILGILLFFALSTS--QL 60
          MV+F+S  SG+ +V+   +L+VLPLVLPPLPPPPL +LLVPV IL +L F ALS S  QL
Sbjct: 1  MVQFFSAVSGMFMVVFAVTLLVLPLVLPPLPPPPLALLLVPVLILLLLFFMALSPSVVQL 60

[Close]

BLAST of MS028807 vs. NCBI nr
Match: KYP31451.1 (hypothetical protein KK1_048228 [Cajanus cajan])

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 8  FSGVVLVLCTASLVVLPLVLPPLPPPPLPVLLVPVFILGILLFFALSTSQLPDSPLIYS 67
          +S ++L L T S+++LPLVLPPLPPPPL +L VPVFILG+L F A S S LP+  ++ S
Sbjct: 36 YSVLILALITLSILLLPLVLPPLPPPPLLLLFVPVFILGVLFFLAFSPSTLPNMAVLTS 94

[Close]

BLAST of MS028807 vs. NCBI nr
Match: KAF8044024.1 (hypothetical protein BT93_A2107 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 58.5 bits (140), Expect = 2.5e-05
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 1  MVKFYSVFSGVVLVLCTASLVVLPLVLPPLPPPPLPVLLVPVFILGILLFFALSTSQLPD 60
          MVKF+S  S  +L L   SL+VLPL+LPPLPPPP P+LLVPV I+ +L+  ALS   +P+
Sbjct: 34 MVKFFSARSIFLLALLAISLLVLPLILPPLPPPPAPLLLVPVLIMSVLILLALSPYHMPN 93

[Close]

BLAST of MS028807 vs. ExPASy Swiss-Prot
Match: Q7X6L2 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japonica OX=39947 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.4e-05
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 3   KFYSVFSGVVLVLCTASLVVLPLVLPPLPPPPLPVLLVPVFILGILLFFA 53
           K++SV S ++LV  TASLV+LPLVLPPLPPPP  ++LVPV +L +LL  A
Sbjct: 98  KYFSVESLLLLVCVTASLVILPLVLPPLPPPPSMLMLVPVAMLVLLLALA 147

[Close]

BLAST of MS028807 vs. ExPASy Swiss-Prot
Match: C7SFP6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis OX=51351 GN=ARGOS PE=2 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-04
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 4   FYSVFSGVVLVLCTASLVVLPLVLPPLPPPPLPVLLVPVFILGILLFFALSTS 57
           ++S+ S V+LV  TASL++LPLVLPPLPPPP  +LLVP+ I+ +L+  A   S
Sbjct: 71  YFSLESLVILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMPS 123

[Close]

BLAST of MS028807 vs. ExPASy Swiss-Prot
Match: Q8RXL7 (ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-04
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 4   FYSVFSGVVLVLCTASLVVLPLVLPPLPPPPLPVLLVPVFILGILLFFALSTS 57
           ++S+ S VVLV  TASL++LPL+LPPLPPPP  +LL+P+ I+ +L+  A   S
Sbjct: 70  YFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of MS028807 vs. ExPASy TrEMBL
Match: A0A3N7GCD6 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G037801 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.4e-07
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 1  MVKFYSVFSGVVLVLCTASLVVLPLVLPPLPPPPLPVLLVPVFILGILLFFALSTSQLPD 60
          M +++   + +V+V+ T  L+VLPLVLPPLPPPPL +L VPVFI+ +L+F A S S+LPD
Sbjct: 1  MFRYFKSIAVMVMVVLTVFLLVLPLVLPPLPPPPLVLLFVPVFIMSLLVFLAFSPSKLPD 60

Query: 61 SP 63
          +P
Sbjct: 61 TP 62

[Close]

BLAST of MS028807 vs. ExPASy TrEMBL
Match: U5DDG3 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00190p00037690 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MVKFYSVFSGVVLVLCTASLVVLPLVLPPLPPPPLPVLLVPVFILGILLFFALSTSQL 59
           MV+++S+ S VVL+  TASLVVLPLVLPPLPPPP  +LL+PV IL +LLFFALS+S +
Sbjct: 53  MVRYFSLGSMVVLLGLTASLVVLPLVLPPLPPPPFMLLLLPVGILMVLLFFALSSSDI 110

[Close]

BLAST of MS028807 vs. ExPASy TrEMBL
Match: A0A251N6D5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G039200 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 1  MVKFYSVFSGVVLVLCTASLVVLPLVLPPLPPPPLPVLLVPVFILGILLFFALSTS--QL 60
          MV+F+S  SG+ +V+   +L+VLPLVLPPLPPPPL +LLVPV IL +L F ALS S  QL
Sbjct: 1  MVQFFSAVSGMFMVVFAVTLLVLPLVLPPLPPPPLALLLVPVLILLLLFFMALSPSVVQL 60

[Close]

BLAST of MS028807 vs. ExPASy TrEMBL
Match: A0A151QMC9 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_048228 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.1e-06
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 8  FSGVVLVLCTASLVVLPLVLPPLPPPPLPVLLVPVFILGILLFFALSTSQLPDSPLIYS 67
          +S ++L L T S+++LPLVLPPLPPPPL +L VPVFILG+L F A S S LP+  ++ S
Sbjct: 36 YSVLILALITLSILLLPLVLPPLPPPPLLLLFVPVFILGVLFFLAFSPSTLPNMAVLTS 94

[Close]

BLAST of MS028807 vs. ExPASy TrEMBL
Match: A0A5B7AL58 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.1e-06
Identity = 31/60 (51.67%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 1   MVKFYSVFSGVVLVLCTASLVVLPLVLPPLPPPPLPVLLVPVFILGILLFFALSTSQLPD 60
           +V+F+S+ + V++V+ T SL+VLP+VLPPLPPPPL +L +P+ I+ +L+  A S SQLP+
Sbjct: 90  LVRFFSLRAVVIMVVLTVSLLVLPVVLPPLPPPPLMLLFIPILIMAVLILLAFSPSQLPN 149

[Close]

BLAST of MS028807 vs. TAIR 10
Match: AT2G44080.1 (ARGOS-like )

HSP 1 Score: 46.2 bits (108), Expect = 1.2e-05
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 4   FYSVFSGVVLVLCTASLVVLPLVLPPLPPPPLPVLLVPVFILGILLFFALSTS 57
           ++S+ S VVLV  TASL++LPL+LPPLPPPP  +LL+P+ I+ +L+  A   S
Sbjct: 70  YFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of MS028807 vs. TAIR 10
Match: AT3G59900.1 (auxin-regulated gene involved in organ size )

HSP 1 Score: 43.1 bits (100), Expect = 1.0e-04
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 4   FYSVFSGVVLVLCTASLVVLPLVLPPLPPPPLPVLLVPVFILGILLFFALSTS 57
           ++S+ S  +LV  TASL++LPLVLPPLPPPP  +LLVP+ I+ +L+  A   S
Sbjct: 64  YFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

The following BLAST results are available for this feature:

BLAST of MS028807 vs. NCBI nr


Match Name	E-value	Identity	Description
RQO91248.1	1.7e-06	54.84	hypothetical protein POPTR_006G037801 [Populus trichocarpa]	[more]
ERN18453.1	2.3e-06	67.24	hypothetical protein AMTR_s00190p00037690 [Amborella trichopoda]	[more]
ONH94911.1	2.9e-06	62.90	hypothetical protein PRUPE_7G039200 [Prunus persica]	[more]
KYP31451.1	1.5e-05	57.63	hypothetical protein KK1_048228 [Cajanus cajan]	[more]
KAF8044024.1	2.5e-05	56.67	hypothetical protein BT93_A2107 [Corymbia citriodora subsp. variegata]	[more]

BLAST of MS028807 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7X6L2	3.4e-05	62.00	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japon...	[more]
C7SFP6	1.3e-04	54.72	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]
Q8RXL7	1.7e-04	52.83	ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1	[more]

BLAST of MS028807 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A3N7GCD6	8.4e-07	54.84	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G037801 PE=4 ...	[more]
U5DDG3	1.1e-06	67.24	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00190p00037690...	[more]
A0A251N6D5	1.4e-06	62.90	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G039200 PE=4 SV=1	[more]
A0A151QMC9	7.1e-06	57.63	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_048228 PE=4 SV=1	[more]
A0A5B7AL58	7.1e-06	51.67	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276...	[more]

BLAST of MS028807 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44080.1	1.2e-05	52.83	ARGOS-like	[more]
AT3G59900.1	1.0e-04	52.83	auxin-regulated gene involved in organ size	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38928	ARGOS7	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS028807.1	MS028807.1	mRNA