MS027913 (gene) Bitter gourd (TR) v1

Overview
NameMS027913
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCytochrome P450, family 89, subfamily A, polypeptide 3
Locationscaffold375: 212744 .. 214842 (+)
RNA-Seq ExpressionMS027913
SyntenyMS027913
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTGGAGTGTCCCGTTTATAGGTAGGGAGGGGGAACAAGGCCATTGGAACCGTTCCGACCAGCGATTACGGCCATCGTCGGGCCTGAGGTTCGATTCCTTTAGGTCAGTGAGGTCATTTTACTTCACTCAACTCGGTAATTGGTTAGGTTGGTATGGACAGCTGGCTTAGTTTTCCATAACGTTCCTGAACTGACCAAATGTGTCCACGTGTCCGTGTTCAAATTTACCCTCAACATAAGAGATTAGGGATAGAGAGAAGAGAGTAAAATGCAAATGTCAGATAATTTCTCTACTCAATTTGTATGAGATATATTTTACAAATGTTCAATACAATCACTATTTATAGGTACGTCTCTGGAGGATGGTGCACTGACAAGAGCATAAGGTATGGTATTGTGTATGAAGTTGATCTTTTTAAGGATAATAATTATGATATCCTTAAATCTTTTTTGAAATTACAATTATAAACATTGCATTAAAAACTAAAAATTAAATATTAGATCAAACAATCTAACTAAAATATAGAAAAACACACGACGTTGACAAGGAGAAAAACATAATAAAGAATGCTCAAGTTTTAGTGAGGAAAAAAAAGTTGGAGAAAGAGTAAGAAAAAGATCTTCATACACTTGCAGAACATAAATAATTATAAAATTTTTGAAATTCTTTATTAATCATTATTTTAAATTATAATTTTGTTTATAGAAAAAACCATATCTATTCTAACTCATTTTATATGATTAAATAATAAAAACAAAGAGGATGAGAGAGAAAATTTATATCTAAAGATAAAAAATATCCCAAAATAAATATAAAAATATTTAAATTAAAAGAGTAAAATAGGGAGTAAAAAATTCTCCCTATAACCCCTTCCCTAGATAACACAAAATTTAAAACTTTACATAAATACCATATTTTGTTTTGAATTCAAACTAAAATAACTACCACGTGAGGAAAAAAAAGTTAAATTTGTGACTTTTTTCTTTTAAATAAACGTACCAATATTTTAAGAAATACATATAATACTTTTGTGATCTTAATGTAGTTTCCTCTTGAAATTAAAAAAGCAAAAAAGAACAGTAATTTCCTCTTAAAATTTTAAAACTAATTAAAAAATTTAACAAAAAGGTGTTTTCCAATCAATAAACCAGCTCCTAAACTTGACAAAATAAATAGATAAAAAAATAAATAATCCATATAACACATAAATGTCCAAGATAAATGTATAACCTCCAAGGAAAAGCAAGAATAAGAGGTCTGAAATTTGGGAAATTTTCATTTGAGTGGGTGCTTTTTTTTTTTCTGTTCTTTTTAACACTTTATTTTAGGCCCCTAAACCAGTTTATTCAATTTTAATACTAAATTTTTAAAATATCTATTTTAATGCTTTTTAACTTTGAAAAAGTTATAATATACTTATTCTTAAACTTTTGAAATATCTATTTTAAATTTTAAATTCTTATAAAGCAAAGTATTTTGGTTCATGTTATTTTTTTTTCCCTCAACCAACCTATGTGACTCCAATAATTATTCATGTCAACGCTTCAAAATACATATTATTTAACAGTCATTTTAATCCAAGTAATTACACTAAAATGAAAAGAAATTTTGTCATCTCTAATATAGAGGTAAAAAAAATAGAGAGATAGAAGGAAACTCCTAATACAAAAACAATATAACCGAAAATAAATAAATAAAAAGACAAAAAAATGTTAAGGCAAAAGAAAAATTGAACAAGAAAAAAATTAAATAGAGAAAAGTTAAAATATATTTCTTAGAGATTAATATTAATACTATGTCCATATCAATTAGCTTTTGGGAGGTGAGATTGCGGCGGAGGAGGCGCCAGAGAGGGCCGTAGGAGGCGGAATTGATGTTGTGCTGGTTGCTGGAGGCGATCTTTCTGACGGGAAGAGCCGGTGGGCGGTGGGCGAAGACAGCGCCGTTGAGGACGAGGACGGCGTGGGCGATTGTGCGGTCGGCGATGAAGATGGCGGGGTGGGAGCCGACGCGGAGGGTGATGATGGGGCCGTATTTGGCGACGGCGGCGCGGAGGAGGGACTCCATTTGGAGAGGGGAGCGGCGGAGCCATAG

mRNA sequence

ATGAGGTGGAGTGTCCCGTTTATAGGTAGGGAGGGGGAACAAGGCCATTGGAACCGTTCCGACCAGCGATTACGGCCATCGTCGGGCCTGAGGTTCGATTCCTTTAGGTCAGTGAGGTCATTTTACTTCACTCAACTCGGTGAGATTGCGGCGGAGGAGGCGCCAGAGAGGGCCGTAGGAGGCGGAATTGATGTTGTGCTGGTTGCTGGAGGCGATCTTTCTGACGGGAAGAGCCGGTGGGCGGTGGGCGAAGACAGCGCCGTTGAGGACGAGGACGGCGTGGGCGATTGTGCGGTCGGCGATGAAGATGGCGGGGTGGGAGCCGACGCGGAGGGTGATGATGGGGCCGTATTTGGCGACGGCGGCGCGGAGGAGGGACTCCATTTGGAGAGGGGAGCGGCGGAGCCATAG

Coding sequence (CDS)

ATGAGGTGGAGTGTCCCGTTTATAGGTAGGGAGGGGGAACAAGGCCATTGGAACCGTTCCGACCAGCGATTACGGCCATCGTCGGGCCTGAGGTTCGATTCCTTTAGGTCAGTGAGGTCATTTTACTTCACTCAACTCGGTGAGATTGCGGCGGAGGAGGCGCCAGAGAGGGCCGTAGGAGGCGGAATTGATGTTGTGCTGGTTGCTGGAGGCGATCTTTCTGACGGGAAGAGCCGGTGGGCGGTGGGCGAAGACAGCGCCGTTGAGGACGAGGACGGCGTGGGCGATTGTGCGGTCGGCGATGAAGATGGCGGGGTGGGAGCCGACGCGGAGGGTGATGATGGGGCCGTATTTGGCGACGGCGGCGCGGAGGAGGGACTCCATTTGGAGAGGGGAGCGGCGGAGCCATAG

Protein sequence

MRWSVPFIGREGEQGHWNRSDQRLRPSSGLRFDSFRSVRSFYFTQLGEIAAEEAPERAVGGGIDVVLVAGGDLSDGKSRWAVGEDSAVEDEDGVGDCAVGDEDGGVGADAEGDDGAVFGDGGAEEGLHLERGAAEP
Homology
BLAST of MS027913 vs. NCBI nr
Match: KAG6571191.1 (hypothetical protein SDJN03_30106, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.2 bits (243), Expect = 5.8e-17
Identity = 58/89 (65.17%), Postives = 67/89 (75.28%), Query Frame = 0

Query: 48  EIAAEEAPERAVGGGIDVVLVAGGDLSDGKSRWAVGEDSAVEDEDGVGDCAVGDEDGGVG 107
           EIA EEAPE AV GG DVVLVAG DL+ G SRW VGE+S V +E  + + AVGD+DGG  
Sbjct: 32  EIATEEAPEWAVRGGADVVLVAGDDLAHGWSRWTVGEESTVLEEGFMSNRAVGDKDGGAV 91

Query: 108 ADAEGDDGAVFGDGGAEEGLHLERGAAEP 137
            DAEGDDGA+FGD  AEE  +LER +AEP
Sbjct: 92  GDAEGDDGAIFGDETAEERFNLERRSAEP 120

BLAST of MS027913 vs. NCBI nr
Match: KAG5559086.1 (hypothetical protein RHGRI_008864 [Rhododendron griersonianum])

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-09
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 47  GEIAAEEAPERAVGGGIDVVLVAGGDLSDGKSRWAVGEDSAVEDEDGVGDCAVGDEDGGV 106
           G++AAEE P  +VGGG D VLVAGGDL+ G+   +VGED AV DE  VG     DEDG  
Sbjct: 18  GQVAAEETPGGSVGGGADTVLVAGGDLAGGEGLGSVGEDDAVLDEGLVGQGGGADEDGRA 77

Query: 107 GADAEGDDGAVFGDGGAEEG 127
           G + EG+DGAVF   GAE G
Sbjct: 78  GPNTEGEDGAVFCPEGAEGG 97

BLAST of MS027913 vs. NCBI nr
Match: KAG5559079.1 (hypothetical protein RHGRI_008857 [Rhododendron griersonianum])

HSP 1 Score: 70.9 bits (172), Expect = 9.8e-09
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 0

Query: 47  GEIAAEEAPERAVGGGIDVVLVAGGDLSDGKSRWAVGEDSAVEDEDGVGDCAVGDEDGGV 106
           G++AAEE P  +VGGG D VLVAGGDL+ G+   AVG+D A+ DE  VG     DEDG  
Sbjct: 18  GQVAAEETPGGSVGGGADTVLVAGGDLAGGEGLGAVGKDGAILDEGLVGQGGGADEDGRA 77

Query: 107 GADAEGDDGAVFGDGGAEEG 127
           G D EG+D AVF   G E G
Sbjct: 78  GPDTEGEDWAVFRPEGTEGG 97

BLAST of MS027913 vs. NCBI nr
Match: OAY78818.1 (hypothetical protein ACMD2_11389 [Ananas comosus])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 52/92 (56.52%), Postives = 59/92 (64.13%), Query Frame = 0

Query: 47  GEIAAEEAPERAVGGGIDVVLVAGGDLSDGKSRWAVGEDSAVEDEDGVGDCAVGDEDG-- 106
           GE+AAE AP+ AVGGG+D  LVAG D +  + R AVGE  A  DE  VG+ AVGDEDG  
Sbjct: 391 GEVAAEGAPDGAVGGGVDAALVAGEDCAGAEGRGAVGELRAARDEGAVGEDAVGDEDGRA 450

Query: 107 GVGADAEGDDGAVFGDGGAEEGLHLE-RGAAE 136
           G G   EGDD AV     AEE L +E R AAE
Sbjct: 451 GGGQQLEGDDRAVPPAQAAEEPLDVEIRPAAE 482

BLAST of MS027913 vs. NCBI nr
Match: THU61325.1 (hypothetical protein C4D60_Mb07t22100 [Musa balbisiana])

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-08
Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = 0

Query: 47  GEIAAEEAPERAVGGGIDVVLVAGGDLSDGKSRWAVGEDSAVEDEDGVGDCAVGDEDGGV 106
           GE+AAEEAP+ A+GGG DVVL    +    +   +VGE SAV DE  VGD +V DEDGG 
Sbjct: 36  GEVAAEEAPDGAIGGGGDVVLAHAEEADCRQRGGSVGEGSAVLDESLVGDGSVRDEDGGA 95

Query: 107 GADAEGDDGAVFGDGGAEEGLHLERGAAEP 137
           GAD + DDGAV      ++ L L  G AEP
Sbjct: 96  GADVKRDDGAVPSVELPQDVLDLSEGPAEP 125

BLAST of MS027913 vs. ExPASy TrEMBL
Match: A0A199VP70 (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_11389 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.2e-09
Identity = 52/92 (56.52%), Postives = 59/92 (64.13%), Query Frame = 0

Query: 47  GEIAAEEAPERAVGGGIDVVLVAGGDLSDGKSRWAVGEDSAVEDEDGVGDCAVGDEDG-- 106
           GE+AAE AP+ AVGGG+D  LVAG D +  + R AVGE  A  DE  VG+ AVGDEDG  
Sbjct: 391 GEVAAEGAPDGAVGGGVDAALVAGEDCAGAEGRGAVGELRAARDEGAVGEDAVGDEDGRA 450

Query: 107 GVGADAEGDDGAVFGDGGAEEGLHLE-RGAAE 136
           G G   EGDD AV     AEE L +E R AAE
Sbjct: 451 GGGQQLEGDDRAVPPAQAAEEPLDVEIRPAAE 482

BLAST of MS027913 vs. ExPASy TrEMBL
Match: A0A4S8JHU5 (CAP10 domain-containing protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb07t22100 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = 0

Query: 47  GEIAAEEAPERAVGGGIDVVLVAGGDLSDGKSRWAVGEDSAVEDEDGVGDCAVGDEDGGV 106
           GE+AAEEAP+ A+GGG DVVL    +    +   +VGE SAV DE  VGD +V DEDGG 
Sbjct: 36  GEVAAEEAPDGAIGGGGDVVLAHAEEADCRQRGGSVGEGSAVLDESLVGDGSVRDEDGGA 95

Query: 107 GADAEGDDGAVFGDGGAEEGLHLERGAAEP 137
           GAD + DDGAV      ++ L L  G AEP
Sbjct: 96  GADVKRDDGAVPSVELPQDVLDLSEGPAEP 125

BLAST of MS027913 vs. ExPASy TrEMBL
Match: A0A7J0D8J7 (Cytochrome P450, family 89, subfamily A, polypeptide 3 OS=Actinidia rufa OX=165716 GN=Acr_00g0008140 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-05
Identity = 45/90 (50.00%), Postives = 53/90 (58.89%), Query Frame = 0

Query: 47  GEIAAEEAPERAVGGGIDVVLVAGGDLSDGKSRWAVGEDSAVEDEDGVGDCAVGDEDGGV 106
           GE+ AE+AP  A+ GGI+VVLVA  DL+  +  WAV E S V DE  VG    G E    
Sbjct: 58  GEVTAEDAPHGAICGGINVVLVAVYDLASRQVLWAVREYSTVLDEGLVGHLMAGHEYSRT 117

Query: 107 GADAEGDDGAVFGDGGAEEGLHLERGAAEP 137
              AEGDDGAV      E+G HL RG A+P
Sbjct: 118 RPYAEGDDGAVLIPQILEDGFHL-RGLAQP 146

BLAST of MS027913 vs. ExPASy TrEMBL
Match: A0A7J6G5L4 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_010722 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.2e-05
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 48  EIAAEEAPERAVGGGIDVVLVAGGDLSDGKSRWAVGEDSAVEDEDGVGDCAVGDEDGGVG 107
           ++AAEE P  AV GG DV L+   D + G+SR AVGE  A+ D+  VG+  V D+DG   
Sbjct: 7   DVAAEEPPCGAVLGGADVKLIIVEDSTCGESRRAVGEGGAIVDKSLVGEDTVSDDDGSAR 66

Query: 108 ADAEGDDGAVFGDGGAEEGLHLERGAAE 136
           A AE D+GAV G   AE+ L LE   AE
Sbjct: 67  AYAERDNGAVLGVEVAEDWLKLEESFAE 94

BLAST of MS027913 vs. ExPASy TrEMBL
Match: A0A7J6DXI8 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_027766 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 6.0e-04
Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = 0

Query: 48  EIAAEEAPERAVGGGIDVVLVAGGDLSDGKSRWAVGEDSAVEDEDGVGDCAVGDEDGGVG 107
           ++AAEE P  AV GG DV LV   D + G+SR AVGE   + D+  VG+  V D+DG   
Sbjct: 7   DVAAEEPPCGAVLGGADVKLVIVEDSTCGESRRAVGEGGPIVDKGLVGEDTVSDDDGSAR 66

Query: 108 ADAEGDDGAVFGDGGAEEGLHLERGAAE 136
             AE D+GAV G   AE+ L LE   AE
Sbjct: 67  PYAERDNGAVLGVEVAEDWLKLEESFAE 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6571191.15.8e-1765.17hypothetical protein SDJN03_30106, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG5559086.11.2e-0957.50hypothetical protein RHGRI_008864 [Rhododendron griersonianum][more]
KAG5559079.19.8e-0955.00hypothetical protein RHGRI_008857 [Rhododendron griersonianum][more]
OAY78818.11.3e-0856.52hypothetical protein ACMD2_11389 [Ananas comosus][more]
THU61325.14.9e-0852.22hypothetical protein C4D60_Mb07t22100 [Musa balbisiana][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A199VP706.2e-0956.52Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_11389 PE=4 SV=1[more]
A0A4S8JHU52.4e-0852.22CAP10 domain-containing protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb07t22100 ... [more]
A0A7J0D8J72.4e-0550.00Cytochrome P450, family 89, subfamily A, polypeptide 3 OS=Actinidia rufa OX=1657... [more]
A0A7J6G5L44.2e-0548.86Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_010722 PE=4 SV=1[more]
A0A7J6DXI86.0e-0447.73Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_027766 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..136

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS027913.1MS027913.1mRNA