MS027853 (gene) Bitter gourd (TR) v1

Overview


Name	MS027853
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RAB GTPase homolog A4D
Location	scaffold735: 366297 .. 367807 (+)
RNA-Seq Expression	MS027853
Synteny	MS027853

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAATCTGTATGGGGATTACAATCAGAAGATTGATTACGTCTTCAAAGTTGTGTTGATCGGAGATTCGGCCGTCGGCAAAACCCAACTCCTTGCGCGATTTTCCCGGAATGAATTTAGCCTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTCATTGATCAGAAAACAGTGAAAGCCCAGATATGGGACACTGCTGGACAAGAAAGGTATGTGCCCATTACTCTTTTCTCTTGTGAGGTAAATTATATTTTGCTTTCTTTCTGGTGGACTCTTCGTTGTTCAAGGTTTGGATCTGGGATGGCTCTAGAGAATGGAAATTGGAAATGTGCTCTTCAGCTTTTCTGAATGATGTATTATAAAAGATAGAATTAGACAGCAAGGATTTTTGCAGCCTGAAATACAATTAGAACTTGTTTTCCGGTTGTTTTCTCTGTACTCTTAAATCCAGAGAGAATGCAGATGTCTATTTGTGTTTGAATGCAGTTGTGGTGATTAGAATTGTGTTCAAGTTACTTTCTGTTCGTTTGGGTAGAAGATTTAAGTCGAATTTTGTAAATTAGCCTGGTCTACTTCCAATTATAGTGTTTGGATTGGAAAGGAATGTCAATCATGATGAAAAGGCAAGTCTTAGGATGATATTACGAGTATTAGTGAAAAGTTGGTGTTAGACTACAATATTTAGTTGAAGTTATTTCCCCCACATTTAGAATTGTCCTTGGGCAGATTTACTCCTCTGCTTTTGTTGTTCATATTAGGTTCTCTGTTTTTGTTATTTGTAGCTGCAGGCTTGCAGCACTCTTTCACTGATTGTCAGAGGATTGTAAGCCATAGTTTTGTTTTACGCGTTCTATAATAGGGACATGAGAATCGTGTAGCTAGAAGAAAGCTAATGAGAAGCATTTGAGCTATGTCGGACACTGAGTAGTTAGGAGTAGTCTTTTGTGATTCTGTTTTTATCAGATAGGATGCAAATACAAGGGGAGTGAGTTTAGCATAAATTTGAGAGAGAGAATAGTGTAGAGTTATGAAGAAGTGAAATCAGGGGGGGTTGAAGATCTCTCTTGAAAGTTTGGCACCTTTTGTACTTTTGGTCAGAAGATACAAAAGTTTTTTTTACTGTCTGGGAAGTTCTATCTAATTGCTTTTAGAGCACATTCTCATTAGGTATGCCTAGAGTACGAAAGATGGATAGTATAATGGAGGATGTGAATTGTAATTGGGATCGGGATTGATTATTTAGGAAGCCTAGAAGATTCTGGAGTTGGAAAAGAATATCATTGTTTGGTCGTGTGATGAATAAATTGCTACAGCAAATGGTGGTGGAACGATTGGCAACGGTTAGAGACATTCTTGATAAGGGGAAGGCAATTGTTGAACAGTGGAATGAAGGAGAGGCTTATGAGACGGTGCAGAGGAAGTCAAGACTGAATGAACTAATCTCAAGAAGACTTGAGATGCCTCAATTCAATCCAGTTGATCTGGATGGATAG

mRNA sequence

ATGTCGAATCTGTATGGGGATTACAATCAGAAGATTGATTACGTCTTCAAAGTTGTGTTGATCGGAGATTCGGCCGTCGGCAAAACCCAACTCCTTGCGCGATTTTCCCGGAATGAATTTAGCCTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTCATTGATCAGAAAACAGTGAAAGCCCAGATATGGGACACTGCTGGACAAGAAAGGAAGCCTAGAAGATTCTGGAGTTGGAAAAGAATATCATTGTTTGGTCGTGTGATGAATAAATTGCTACAGCAAATGGTGGTGGAACGATTGGCAACGGTTAGAGACATTCTTGATAAGGGGAAGGCAATTGTTGAACAGTGGAATGAAGGAGAGGCTTATGAGACGGTGCAGAGGAAGTCAAGACTGAATGAACTAATCTCAAGAAGACTTGAGATGCCTCAATTCAATCCAGTTGATCTGGATGGATAG

Coding sequence (CDS)

ATGTCGAATCTGTATGGGGATTACAATCAGAAGATTGATTACGTCTTCAAAGTTGTGTTGATCGGAGATTCGGCCGTCGGCAAAACCCAACTCCTTGCGCGATTTTCCCGGAATGAATTTAGCCTTGATTCCAAAGCTACTATTGGAGTCGAGTTTCAGACTAAAACTCTCGTCATTGATCAGAAAACAGTGAAAGCCCAGATATGGGACACTGCTGGACAAGAAAGGAAGCCTAGAAGATTCTGGAGTTGGAAAAGAATATCATTGTTTGGTCGTGTGATGAATAAATTGCTACAGCAAATGGTGGTGGAACGATTGGCAACGGTTAGAGACATTCTTGATAAGGGGAAGGCAATTGTTGAACAGTGGAATGAAGGAGAGGCTTATGAGACGGTGCAGAGGAAGTCAAGACTGAATGAACTAATCTCAAGAAGACTTGAGATGCCTCAATTCAATCCAGTTGATCTGGATGGATAG

Protein sequence

MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIWDTAGQERKPRRFWSWKRISLFGRVMNKLLQQMVVERLATVRDILDKGKAIVEQWNEGEAYETVQRKSRLNELISRRLEMPQFNPVDLDG

Homology

[Close]

BLAST of MS027853 vs. NCBI nr
Match: XP_022151622.1 (ras-related protein RABA4d-like [Momordica charantia])

HSP 1 Score: 152.1 bits (383), Expect = 3.9e-33
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQER 77
          QKTVKAQIWDTAGQER
Sbjct: 61 QKTVKAQIWDTAGQER 76

[Close]

BLAST of MS027853 vs. NCBI nr
Match: XP_004150166.1 (ras-related protein RABA4d [Cucumis sativus] >KGN53823.1 hypothetical protein Csa_014745 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 8.7e-33
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFS+DSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQER 77
          QKTVKAQIWDTAGQER
Sbjct: 61 QKTVKAQIWDTAGQER 76

[Close]

BLAST of MS027853 vs. NCBI nr
Match: XP_008460801.1 (PREDICTED: ras-related protein RABA4d [Cucumis melo] >KAA0053214.1 ras-related protein RABA4d [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 8.7e-33
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFS+DSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQER 77
          QKTVKAQIWDTAGQER
Sbjct: 61 QKTVKAQIWDTAGQER 76

[Close]

BLAST of MS027853 vs. NCBI nr
Match: XP_038881448.1 (ras-related protein RABA4d [Benincasa hispida])

HSP 1 Score: 151.0 bits (380), Expect = 8.7e-33
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFS+DSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQER 77
          QKTVKAQIWDTAGQER
Sbjct: 61 QKTVKAQIWDTAGQER 76

[Close]

BLAST of MS027853 vs. NCBI nr
Match: KAB2631400.1 (ras-related protein RABA4d [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-32
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSLDSKATIGVEFQTKTLV+D
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSLDSKATIGVEFQTKTLVLD 60

Query: 61 QKTVKAQIWDTAGQER 77
          QKTVKAQIWDTAGQER
Sbjct: 61 QKTVKAQIWDTAGQER 76

[Close]

BLAST of MS027853 vs. ExPASy Swiss-Prot
Match: Q9LH50 (Ras-related protein RABA4d OS=Arabidopsis thaliana OX=3702 GN=RABA4D PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.7e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFS+DSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQER 77
           KTVKAQIWDTAGQER
Sbjct: 61 NKTVKAQIWDTAGQER 76

[Close]

BLAST of MS027853 vs. ExPASy Swiss-Prot
Match: Q40520 (Ras-related protein Rab11C OS=Nicotiana tabacum OX=4097 GN=RAB11C PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.2e-30
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60
          M++ YGD +QKIDYVFKVVLIGDSAVGKTQ+LARF+RNEFSLDSKATIGVEFQT+TLVI 
Sbjct: 1  MASGYGDASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQ 60

Query: 61 QKTVKAQIWDTAGQER 77
           K+VKAQIWDTAGQER
Sbjct: 61 HKSVKAQIWDTAGQER 76

[Close]

BLAST of MS027853 vs. ExPASy Swiss-Prot
Match: Q40191 (Ras-related protein Rab11A OS=Lotus japonicus OX=34305 GN=RAB11A PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.4e-30
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 5  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTV 64
          YGD N KIDYVFKVVLIGDSAVGK+Q+LARF+RNEFSLDSK+TIGVEFQT+TLVID KTV
Sbjct: 7  YGDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTV 66

Query: 65 KAQIWDTAGQER 77
          KAQIWDTAGQER
Sbjct: 67 KAQIWDTAGQER 78

[Close]

BLAST of MS027853 vs. ExPASy Swiss-Prot
Match: Q9FE79 (Ras-related protein RABA4c OS=Arabidopsis thaliana OX=3702 GN=RABA4C PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.1e-29
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60
          MS    ++NQKIDYVFKVVLIGDSAVGK+QLLARFSRNEFS++SKATIGVEFQT+TL ID
Sbjct: 1  MSKFQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEID 60

Query: 61 QKTVKAQIWDTAGQER 77
          +KT+KAQIWDTAGQER
Sbjct: 61 RKTIKAQIWDTAGQER 76

[Close]

BLAST of MS027853 vs. ExPASy Swiss-Prot
Match: Q40522 (Ras-related protein Rab11D OS=Nicotiana tabacum OX=4097 GN=RAB11D PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.1e-29
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60
          M++ YGD +QKIDYVFKVVLIGDSAVGK+Q+LARF+RNEFSLDSKATIGVEFQT+TL I 
Sbjct: 1  MASGYGDASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQ 60

Query: 61 QKTVKAQIWDTAGQER 77
           K+VKAQIWDTAGQER
Sbjct: 61 HKSVKAQIWDTAGQER 76

[Close]

BLAST of MS027853 vs. ExPASy TrEMBL
Match: A0A6J1DE05 (ras-related protein RABA4d-like OS=Momordica charantia OX=3673 GN=LOC111019535 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.9e-33
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQER 77
          QKTVKAQIWDTAGQER
Sbjct: 61 QKTVKAQIWDTAGQER 76

[Close]

BLAST of MS027853 vs. ExPASy TrEMBL
Match: A0A5A7UD85 (Ras-related protein RABA4d OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192G00440 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 4.2e-33
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFS+DSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQER 77
          QKTVKAQIWDTAGQER
Sbjct: 61 QKTVKAQIWDTAGQER 76

[Close]

BLAST of MS027853 vs. ExPASy TrEMBL
Match: A0A0A0KW90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152280 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 4.2e-33
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFS+DSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQER 77
          QKTVKAQIWDTAGQER
Sbjct: 61 QKTVKAQIWDTAGQER 76

[Close]

BLAST of MS027853 vs. ExPASy TrEMBL
Match: A0A1S3CDP9 (ras-related protein RABA4d OS=Cucumis melo OX=3656 GN=LOC103499562 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 4.2e-33
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFS+DSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQER 77
          QKTVKAQIWDTAGQER
Sbjct: 61 QKTVKAQIWDTAGQER 76

[Close]

BLAST of MS027853 vs. ExPASy TrEMBL
Match: A0A5N5I156 (Ras-related protein RABA4d OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_008919 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 7.2e-33
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFSLDSKATIGVEFQTKTLV+D
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSLDSKATIGVEFQTKTLVLD 60

Query: 61 QKTVKAQIWDTAGQER 77
          QKTVKAQIWDTAGQER
Sbjct: 61 QKTVKAQIWDTAGQER 76

[Close]

BLAST of MS027853 vs. TAIR 10
Match: AT3G12160.1 (RAB GTPase homolog A4D )

HSP 1 Score: 147.9 bits (372), Expect = 6.9e-36
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60
          MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARF+RNEFS+DSKATIGVEFQTKTLVID
Sbjct: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVID 60

Query: 61 QKTVKAQIWDTAGQER 77
           KTVKAQIWDTAGQER
Sbjct: 61 NKTVKAQIWDTAGQER 76

[Close]

BLAST of MS027853 vs. TAIR 10
Match: AT5G47960.1 (RAB GTPase homolog A4C )

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-30
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MSNLYGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVID 60
          MS    ++NQKIDYVFKVVLIGDSAVGK+QLLARFSRNEFS++SKATIGVEFQT+TL ID
Sbjct: 1  MSKFQSNFNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSIESKATIGVEFQTRTLEID 60

Query: 61 QKTVKAQIWDTAGQER 77
          +KT+KAQIWDTAGQER
Sbjct: 61 RKTIKAQIWDTAGQER 76

[Close]

BLAST of MS027853 vs. TAIR 10
Match: AT5G65270.1 (RAB GTPase homolog A4A )

HSP 1 Score: 127.9 bits (320), Expect = 7.3e-30
Identity = 62/72 (86.11%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 5  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTV 64
          YGD +QKIDYVFKVVLIGDSAVGK+Q+LAR++R+EFSLDSKATIGVEFQT+TLVID K+V
Sbjct: 7  YGDPSQKIDYVFKVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVIDHKSV 66

Query: 65 KAQIWDTAGQER 77
          KAQIWDTAGQER
Sbjct: 67 KAQIWDTAGQER 78

[Close]

BLAST of MS027853 vs. TAIR 10
Match: AT4G39990.1 (RAB GTPase homolog A4B )

HSP 1 Score: 121.3 bits (303), Expect = 6.9e-28
Identity = 58/72 (80.56%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 5  YGDYNQKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTV 64
          YG  + K+DYVFKVVLIGDSAVGK+QLLARF+R+EFS+DSKATIGVEFQT+TL I+QK++
Sbjct: 7  YGGASGKVDYVFKVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKSI 66

Query: 65 KAQIWDTAGQER 77
          KAQIWDTAGQER
Sbjct: 67 KAQIWDTAGQER 78

[Close]

BLAST of MS027853 vs. TAIR 10
Match: AT1G01200.1 (RAB GTPase homolog A3 )

HSP 1 Score: 108.2 bits (269), Expect = 6.0e-24
Identity = 56/98 (57.14%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 10  QKIDYVFKVVLIGDSAVGKTQLLARFSRNEFSLDSKATIGVEFQTKTLVIDQKTVKAQIW 69
           +KIDYVFKVV+IGDSAVGKTQLL+RF+ NEF  DSK+TIGVEFQT+T+ +  K VKAQIW
Sbjct: 23  EKIDYVFKVVVIGDSAVGKTQLLSRFTHNEFCYDSKSTIGVEFQTRTITLRGKLVKAQIW 82

Query: 70  DTAGQERKPRRFWSWKRISLFGRVMNKLLQQMVVERLA 108
           DTAGQER      ++ R +L   V+  + +++  + +A
Sbjct: 83  DTAGQERYRAVTSAYYRGALGAMVVYDITKRLSFDHVA 120

The following BLAST results are available for this feature:

BLAST of MS027853 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151622.1	3.9e-33	100.00	ras-related protein RABA4d-like [Momordica charantia]	[more]
XP_004150166.1	8.7e-33	98.68	ras-related protein RABA4d [Cucumis sativus] >KGN53823.1 hypothetical protein Cs...	[more]
XP_008460801.1	8.7e-33	98.68	PREDICTED: ras-related protein RABA4d [Cucumis melo] >KAA0053214.1 ras-related p...	[more]
XP_038881448.1	8.7e-33	98.68	ras-related protein RABA4d [Benincasa hispida]	[more]
KAB2631400.1	1.5e-32	97.37	ras-related protein RABA4d [Pyrus ussuriensis x Pyrus communis]	[more]

BLAST of MS027853 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LH50	9.7e-35	96.05	Ras-related protein RABA4d OS=Arabidopsis thaliana OX=3702 GN=RABA4D PE=1 SV=1	[more]
Q40520	7.2e-30	85.53	Ras-related protein Rab11C OS=Nicotiana tabacum OX=4097 GN=RAB11C PE=2 SV=1	[more]
Q40191	9.4e-30	88.89	Ras-related protein Rab11A OS=Lotus japonicus OX=34305 GN=RAB11A PE=2 SV=1	[more]
Q9FE79	2.1e-29	82.89	Ras-related protein RABA4c OS=Arabidopsis thaliana OX=3702 GN=RABA4C PE=2 SV=1	[more]
Q40522	6.1e-29	82.89	Ras-related protein Rab11D OS=Nicotiana tabacum OX=4097 GN=RAB11D PE=2 SV=1	[more]

BLAST of MS027853 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DE05	1.9e-33	100.00	ras-related protein RABA4d-like OS=Momordica charantia OX=3673 GN=LOC111019535 P...	[more]
A0A5A7UD85	4.2e-33	98.68	Ras-related protein RABA4d OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A0A0KW90	4.2e-33	98.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152280 PE=4 SV=1	[more]
A0A1S3CDP9	4.2e-33	98.68	ras-related protein RABA4d OS=Cucumis melo OX=3656 GN=LOC103499562 PE=4 SV=1	[more]
A0A5N5I156	7.2e-33	97.37	Ras-related protein RABA4d OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D...	[more]

BLAST of MS027853 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12160.1	6.9e-36	96.05	RAB GTPase homolog A4D	[more]
AT5G47960.1	1.5e-30	82.89	RAB GTPase homolog A4C	[more]
AT5G65270.1	7.3e-30	86.11	RAB GTPase homolog A4A	[more]
AT4G39990.1	6.9e-28	80.56	RAB GTPase homolog A4B	[more]
AT1G01200.1	6.0e-24	57.14	RAB GTPase homolog A3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 57..79 score: 49.13 coord: 39..55 score: 34.83 coord: 16..37 score: 50.9
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 16..139 e-value: 1.1E-10 score: 23.7
None	No IPR available	PANTHER	PTHR47978:SF27	BNAA05G26830D PROTEIN	coord: 1..77
None	No IPR available	PANTHER	PTHR47978	FAMILY NOT NAMED	coord: 1..77
None	No IPR available	PROSITE	PS51419	RAB	coord: 11..158 score: 14.269119
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 18..115 e-value: 0.008 score: -80.6
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 17..76 e-value: 3.1E-22 score: 78.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 5..101 e-value: 1.5E-25 score: 91.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..81
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 15..77 e-value: 2.0E-15 score: 54.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS027853.1	MS027853.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding