MS027542 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCATTCAGGGCGGCCGTTCTTCGTCATGTTCGAGTTCCGATCCGATTCCTTGCCCTAGCTCACGGGGAATGCCAACCGCAACCATGTTCCGATGGATTGCTCCGGCTATTTTCATCACACGATGATCGTTTTACCAAGAAGGTCATTGAGAGAGTCATCGCGGTTATCAAGTGTCATCCCAAAGTGGATCCGTCCAAGGTGATTTGATCTTATCACTCATTTTCCCTTTCCTTTTTCCAGTTGGTTGAGTCGTTTTCATGACTTGCATTAGAAAAAAAGAACTAAAAAAGTTGAATGTTCGATCAAACAATCTAACCAAATATAAGAAGACACAATACATTGACTAAAGGAGAAAATTAACATATCGAAAGAGGAAAAAAACTCAAGTTTTGATGAAGAAAAGGTTGGGAGAAAGAGTAAGAAAAAACTCTTTATATAGTTGTAGAAAATAAAAAGTTACGAAACTTTTGAAATTCCTTATTAATTATAATTCAAAATAAATTATAACTTTTTAATTAATTCAGAGACAAAACCTTTCACATTCTAACTCTTTATATTCTAACCTTTAAGAGCGAGAGTTTATTAGAAAGAGAAGATTAATTTTAGAAAACTAAAATTTGTAAGGATGGAAATTATATATTTTAAAAGAAATGAAAAAAAAAAAAAGAAAAAGGAATGGGAGGGAGAGAGAAAAATGAGGAAAAATTGCCCTCAAAATATCTAAATGACAAAATTATCCTCAAAATATCTATGAGAATGTTGANCAAAACCTTTCACATTCTAACTCTTTATATTCTAACCTTTAAGAGCGAGAGTTTATTAGAAAGAGAAGATTAATTTTAGAAAACTAAAATTTGTAAGGATGGAAATTATATATTTTAAAAGAAAGGAAAAAAAAAAAAAGAAAATGGCATGGGAGGGAGAGAGAAAAATTAGGAAAAATTGCCCTCAAAATATCTATGGAAATGTTAAAATTAAAAGGGCAAAATAGGGAGAAAAAGTTTCTCCCTATAGCCCCTTTTAGATATACTATAGATATAGATATAGATATAGACTAGTGTAATACACCGGCATTTGACGTCTATTTTCTTCCTTGACTAGTGCCGAACTTGATCTCGTTTCTGAAATGGCTAAGTATAGAGACAATTCATCGCCTGGAAGAGGTTTAGCGAGGAACGGGACGACACTGGGATATTCTTTTAGTTGGGTGAATGCGTTTCGCATTGCTTGATCTATTCAAACGAGCCATTCTTTCTGAGTACTTGGAAAAATGGTAAATATTTGTCAGTAACTCGAGATATCAATTGGTTCAGTGCTGCAATTCTCCCGTTAAAGGCTATGCACTTGAATGCAAGGTTTTCGGGGAAGTAGTCTTATTTAGATATACTTATATTACCCACACGGTAAGTTTTTGGCTTGATAATTACCCCTTTCAGGATTTCTTTCCTTAGTCAATAGGAAATCCCTTCTTTTGTAGCTTGTTGTGGCCTTTCCAATTAATGAAGTACTCTTTTTCTAAAAAAAAAAATGTTTTCTCTTTATATATGGGACAAAGACCTATTAGGGTTTTGGCATTTATGACAGAATAATAAAATAAATGAAAAAGATAAAAAGAGGTACAAAAGGTAATTATAAATTTGTTGGTGGCAAGACCACATGAAGTTTGTTGTGGGATGGTTGGGTGCATCATATCCTTCCCATTCCAAAATATCATTACTATGTTTTCTTTTTATTATTTTAATATTAATAGTCAAATTAACACGAGCGCTAATTAGTAAATTGTTATTGAAAAGCGGACATATATATATATAACCTTTAATTACAACGAAACACTCGAGATCAAGAAGATGACATTGTCACACATCACATGTTATATGTTCCAATAAGGATAATCAAAACTTGAAAATTTGTGATATATAATATAAAGCTGCAATGTAAAAATATTCAACTTTTTAATCGTGGACATTGCAATAATAATAATTAATGGGTACACTAAATTCCAAATTTGGAACGTAAGGAATCACCAATTTTCCTCCTTTCAACTCTCAAATTTGAACCAACCAAACAAAACCCCATCACTTGCTTTGCTGCTAATTAATTTCTCCTCCAGCTCTCTTCCATGGCCATAGCTTTGGTCCGCTGCCGTCCTTTTGGTTTGATCTGTAGGAGATCAGTACTCTTCATTAAAAACAACCAAACTCAAACCCCATTTTCCCAAGCTTCTCGGAGGGAGAAGAACTTGAAGAGCACTTGTAATTTTCCGGAGTTTGGGTTCAAAGACTACTTGAGTTTGAAGGTAAAGCGAGTGAACGAGGCTTTGGATAGAACGGTGCCGTTGCAGCACTCGACGCAGATCCACGAGGCAATGAGATACTCTCTTTTGCTGCCTGGAAAGCGCTTTCGCCCGATTCTGTGCCTTGCTTCTTGTGAGCTTGTGGGTGGAGACGAAGCTCAAGCCATGCCCATGGCTTGTGCCACTGAGATGATCCAAACCATGTCATTGATGCTTGATGATCTTCCTTGCATGGACGATGACGATGTCCGGCCCGGGAGCCCCGCAAATCATAAGGTGTGTGTTCAACTACCACTAAACTCAAAGGTTTTTATTCATATTCTTAATATTCGTGTGGCCGGTTTGGCGATATCTAACAAATAAAGTATGCGTTCAACTACCACTAAACTTAAATGCTTTTATTTATATTCTTAACATTCTTGTGGCCGGTTTGGTGATCATCACAAGACCAACATAATAAGTGATTGTTGGGAGAAGTTTGAGTTTATTTGTGATCTTTTACATTCTAAAAGAGCACAGTGGCTTAAATGTTCTCTCAATGTTCTAACACCCACACTGAATATGGACCAAACTGTATCAAGACATCCTGAATCCAGTTCACGTACTGCCGACACTCTCTTATTAATTAAGCCTAAACGTCTTCGCTAGCTCACTCACACACAAGTCAAAAAGGTAGATCTAAAAGGAAAGAAGATGGTTCTGGGGAACAAACAAGAACAATAAAGTCAATGTCTTATCTCACGTAAAGTCAAAGACATCTAGAACTTTCATGCTGAAGTTTTAACCCAAGAGGGTACATTCTAATCTATACTAAATGTCATGCAAAATTCTTAATTGTCATCCTTCAGTTGCACTTATAGGTTTTAGGAAGTTTAACTAGTGCATTAAGATTGATCCACAAGGATTACATTATAGGAGTTTGAATATTACATGATCTCTTGATACCATTAAACTACTATTCTAACCAAATCAAATAAAATAGTATGTTTAAACTACTATTAAATTCAAAAGTTTTAGCTATTGAAAAATATAATCTTTCATATTTCATATTCTTATCAAGGTGTTTGGCGAAGAAACGGCCATACTAGCTGGAGACTCACTCCTTTGTCTAGCATTTCAACACATAGTCGAGAGAATCGAAAATGTTTCATCCGAACGAATTTTGAGAGCCATTATTGAGCTTGCTTCAACAACTGGGTTCGACGGGTTGCTCAGGGGGCAACTCCTGGATCTCCACTGCGAGGGGAAAGAAGTGAGTCTTGCGGAACTCGAGTACATTCACACGCTGAAAACATCAAGGCTGATCGAGGCATCGGCAGTCTGCGGGGCGATAATCGGGGAGGCGGCGAGGGGGAGATAA ATGGCATTCAGGGCGGCCGTTCTTCGTCATGTTCGAGTTCCGATCCGATTCCTTGCCCTAGCTCACGGGGAATGCCAACCGCAACCATGTTCCGATGGATTGCTCCGGCTATTTTCATCACACGATGATCGTTTTACCAAGAAGGTCATTGAGAGAGTCATCGCGGTTATCAAGTGTCATCCCAAAGTGGATCCGTCCAAGCTCTCTTCCATGGCCATAGCTTTGGTCCGCTGCCGTCCTTTTGGTTTGATCTGTAGGAGATCAGTACTCTTCATTAAAAACAACCAAACTCAAACCCCATTTTCCCAAGCTTCTCGGAGGGAGAAGAACTTGAAGAGCACTTGTAATTTTCCGGAGTTTGGGTTCAAAGACTACTTGAGTTTGAAGGTAAAGCGAGTGAACGAGGCTTTGGATAGAACGGTGCCGTTGCAGCACTCGACGCAGATCCACGAGGCAATGAGATACTCTCTTTTGCTGCCTGGAAAGCGCTTTCGCCCGATTCTGTGCCTTGCTTCTTGTGAGCTTGTGGGTGGAGACGAAGCTCAAGCCATGCCCATGGCTTGTGCCACTGAGATGATCCAAACCATGTCATTGATGCTTGATGATCTTCCTTGCATGGACGATGACGATGTCCGGCCCGGGAGCCCCGCAAATCATAAGGTGTTTGGCGAAGAAACGGCCATACTAGCTGGAGACTCACTCCTTTGTCTAGCATTTCAACACATAGTCGAGAGAATCGAAAATGTTTCATCCGAACGAATTTTGAGAGCCATTATTGAGCTTGCTTCAACAACTGGGTTCGACGGGTTGCTCAGGGGGCAACTCCTGGATCTCCACTGCGAGGGGAAAGAAGTGAGTCTTGCGGAACTCGAGTACATTCACACGCTGAAAACATCAAGGCTGATCGAGGCATCGGCAGTCTGCGGGGCGATAATCGGGGAGGCGGCGAGGGGGAGATAA ATGGCATTCAGGGCGGCCGTTCTTCGTCATGTTCGAGTTCCGATCCGATTCCTTGCCCTAGCTCACGGGGAATGCCAACCGCAACCATGTTCCGATGGATTGCTCCGGCTATTTTCATCACACGATGATCGTTTTACCAAGAAGGTCATTGAGAGAGTCATCGCGGTTATCAAGTGTCATCCCAAAGTGGATCCGTCCAAGCTCTCTTCCATGGCCATAGCTTTGGTCCGCTGCCGTCCTTTTGGTTTGATCTGTAGGAGATCAGTACTCTTCATTAAAAACAACCAAACTCAAACCCCATTTTCCCAAGCTTCTCGGAGGGAGAAGAACTTGAAGAGCACTTGTAATTTTCCGGAGTTTGGGTTCAAAGACTACTTGAGTTTGAAGGTAAAGCGAGTGAACGAGGCTTTGGATAGAACGGTGCCGTTGCAGCACTCGACGCAGATCCACGAGGCAATGAGATACTCTCTTTTGCTGCCTGGAAAGCGCTTTCGCCCGATTCTGTGCCTTGCTTCTTGTGAGCTTGTGGGTGGAGACGAAGCTCAAGCCATGCCCATGGCTTGTGCCACTGAGATGATCCAAACCATGTCATTGATGCTTGATGATCTTCCTTGCATGGACGATGACGATGTCCGGCCCGGGAGCCCCGCAAATCATAAGGTGTTTGGCGAAGAAACGGCCATACTAGCTGGAGACTCACTCCTTTGTCTAGCATTTCAACACATAGTCGAGAGAATCGAAAATGTTTCATCCGAACGAATTTTGAGAGCCATTATTGAGCTTGCTTCAACAACTGGGTTCGACGGGTTGCTCAGGGGGCAACTCCTGGATCTCCACTGCGAGGGGAAAGAAGTGAGTCTTGCGGAACTCGAGTACATTCACACGCTGAAAACATCAAGGCTGATCGAGGCATCGGCAGTCTGCGGGGCGATAATCGGGGAGGCGGCGAGGGGGAGATAA MAFRAAVLRHVRVPIRFLALAHGECQPQPCSDGLLRLFSSHDDRFTKKVIERVIAVIKCHPKVDPSKLSSMAIALVRCRPFGLICRRSVLFIKNNQTQTPFSQASRREKNLKSTCNFPEFGFKDYLSLKVKRVNEALDRTVPLQHSTQIHEAMRYSLLLPGKRFRPILCLASCELVGGDEAQAMPMACATEMIQTMSLMLDDLPCMDDDDVRPGSPANHKVFGEETAILAGDSLLCLAFQHIVERIENVSSERILRAIIELASTTGFDGLLRGQLLDLHCEGKEVSLAELEYIHTLKTSRLIEASAVCGAIIGEAARGR Homology
BLAST of MS027542 vs. NCBI nr
Match: XP_021603532.1 (geranylgeranyl pyrophosphate synthase 7, chloroplastic-like [Manihot esculenta] >OAY57164.1 hypothetical protein MANES_02G076100v8 [Manihot esculenta]) HSP 1 Score: 271.6 bits (693), Expect = 8.9e-69 Identity = 128/227 (56.39%), Postives = 169/227 (74.45%), Query Frame = 0
BLAST of MS027542 vs. NCBI nr
Match: OMO95617.1 (Polyprenyl synthetase [Corchorus olitorius]) HSP 1 Score: 271.6 bits (693), Expect = 8.9e-69 Identity = 130/194 (67.01%), Postives = 158/194 (81.44%), Query Frame = 0
BLAST of MS027542 vs. NCBI nr
Match: XP_042038450.1 (geranylgeranyl pyrophosphate synthase 7, chloroplastic-like [Salvia splendens] >KAG6387598.1 hypothetical protein SASPL_152790 [Salvia splendens]) HSP 1 Score: 271.2 bits (692), Expect = 1.2e-68 Identity = 136/219 (62.10%), Postives = 165/219 (75.34%), Query Frame = 0
BLAST of MS027542 vs. NCBI nr
Match: XP_023890982.1 (geranylgeranyl pyrophosphate synthase, chloroplastic-like [Quercus suber]) HSP 1 Score: 271.2 bits (692), Expect = 1.2e-68 Identity = 128/196 (65.31%), Postives = 160/196 (81.63%), Query Frame = 0
BLAST of MS027542 vs. NCBI nr
Match: OMP05123.1 (Polyprenyl synthetase [Corchorus olitorius]) HSP 1 Score: 270.8 bits (691), Expect = 1.5e-68 Identity = 134/220 (60.91%), Postives = 168/220 (76.36%), Query Frame = 0
BLAST of MS027542 vs. ExPASy Swiss-Prot
Match: Q94ID7 (Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=3981 GN=GGPS PE=1 SV=1) HSP 1 Score: 231.1 bits (588), Expect = 1.8e-59 Identity = 119/225 (52.89%), Postives = 158/225 (70.22%), Query Frame = 0
BLAST of MS027542 vs. ExPASy Swiss-Prot
Match: P34802 (Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGPPS1 PE=1 SV=2) HSP 1 Score: 229.9 bits (585), Expect = 3.9e-59 Identity = 124/259 (47.88%), Postives = 168/259 (64.86%), Query Frame = 0
BLAST of MS027542 vs. ExPASy Swiss-Prot
Match: Q42698 (Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Catharanthus roseus OX=4058 GN=GGPS1 PE=3 SV=1) HSP 1 Score: 229.6 bits (584), Expect = 5.1e-59 Identity = 127/259 (49.03%), Postives = 166/259 (64.09%), Query Frame = 0
BLAST of MS027542 vs. ExPASy Swiss-Prot
Match: Q43133 (Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic OS=Sinapis alba OX=3728 GN=GGPS1 PE=1 SV=1) HSP 1 Score: 225.7 bits (574), Expect = 7.4e-58 Identity = 120/244 (49.18%), Postives = 163/244 (66.80%), Query Frame = 0
BLAST of MS027542 vs. ExPASy Swiss-Prot
Match: P80042 (Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum annuum OX=4072 GN=GGPS1 PE=3 SV=1) HSP 1 Score: 218.8 bits (556), Expect = 9.0e-56 Identity = 109/210 (51.90%), Postives = 147/210 (70.00%), Query Frame = 0
BLAST of MS027542 vs. ExPASy TrEMBL
Match: A0A1R3JLJ6 (Polyprenyl synthetase OS=Corchorus olitorius OX=93759 GN=COLO4_15753 PE=3 SV=1) HSP 1 Score: 271.6 bits (693), Expect = 4.3e-69 Identity = 130/194 (67.01%), Postives = 158/194 (81.44%), Query Frame = 0
BLAST of MS027542 vs. ExPASy TrEMBL
Match: A0A2C9WC84 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G076100 PE=3 SV=1) HSP 1 Score: 271.6 bits (693), Expect = 4.3e-69 Identity = 128/227 (56.39%), Postives = 169/227 (74.45%), Query Frame = 0
BLAST of MS027542 vs. ExPASy TrEMBL
Match: A0A4D8ZW25 (Geranylgeranyl diphosphate synthase, type II OS=Salvia splendens OX=180675 GN=GGPS PE=3 SV=1) HSP 1 Score: 271.2 bits (692), Expect = 5.6e-69 Identity = 136/219 (62.10%), Postives = 165/219 (75.34%), Query Frame = 0
BLAST of MS027542 vs. ExPASy TrEMBL
Match: A0A1R3KDG3 (Polyprenyl synthetase OS=Corchorus olitorius OX=93759 GN=COLO4_09040 PE=3 SV=1) HSP 1 Score: 270.8 bits (691), Expect = 7.4e-69 Identity = 134/220 (60.91%), Postives = 168/220 (76.36%), Query Frame = 0
BLAST of MS027542 vs. ExPASy TrEMBL
Match: A0A5J5BXS7 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_004148 PE=3 SV=1) HSP 1 Score: 270.8 bits (691), Expect = 7.4e-69 Identity = 137/233 (58.80%), Postives = 174/233 (74.68%), Query Frame = 0
BLAST of MS027542 vs. TAIR 10
Match: AT4G36810.1 (geranylgeranyl pyrophosphate synthase 1 ) HSP 1 Score: 229.9 bits (585), Expect = 2.8e-60 Identity = 124/259 (47.88%), Postives = 168/259 (64.86%), Query Frame = 0
BLAST of MS027542 vs. TAIR 10
Match: AT2G18640.1 (geranylgeranyl pyrophosphate synthase 4 ) HSP 1 Score: 216.9 bits (551), Expect = 2.4e-56 Identity = 112/197 (56.85%), Postives = 140/197 (71.07%), Query Frame = 0
BLAST of MS027542 vs. TAIR 10
Match: AT2G23800.1 (geranylgeranyl pyrophosphate synthase 2 ) HSP 1 Score: 211.5 bits (537), Expect = 1.0e-54 Identity = 113/209 (54.07%), Postives = 143/209 (68.42%), Query Frame = 0
BLAST of MS027542 vs. TAIR 10
Match: AT2G18620.1 (Terpenoid synthases superfamily protein ) HSP 1 Score: 211.1 bits (536), Expect = 1.3e-54 Identity = 114/226 (50.44%), Postives = 149/226 (65.93%), Query Frame = 0
BLAST of MS027542 vs. TAIR 10
Match: AT3G29430.1 (Terpenoid synthases superfamily protein ) HSP 1 Score: 209.1 bits (531), Expect = 5.1e-54 Identity = 113/207 (54.59%), Postives = 144/207 (69.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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