MS027351 (gene) Bitter gourd (TR) v1

Overview


Name	MS027351
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold1336: 98293 .. 98619 (+)
RNA-Seq Expression	MS027351
Synteny	MS027351

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGACGATGGTCGGGTGTTAGGGATCTCCTCGTTGGATGTTGACCATGTTGGTGTGGCTGACAAAATCAAAACCAACATTGTTATATATGGTCCGTGGCTTAGTCATTTGGGCATTTTGAAGAGTTATCAAGCACAGAATTTGAGAGGGCACTTGCCTCTGATCTCTTGGCCGGATGACTCTTCATCTCCGTTTCATCTTGGTACAGAGAACATCCATGGTCCGAGGGCAAGGAAGATGGAGCAGAAGGTGGGCAATGACAGAGGTGCAGCGACAATCGGTTCAAAATACCGTTTTGGAATTTGGGGAGTCTATCAGTCTTAA

mRNA sequence

ATGGTGGACGATGGTCGGGTGTTAGGGATCTCCTCGTTGGATGTTGACCATGTTGGTGTGGCTGACAAAATCAAAACCAACATTGTTATATATGGTCCGTGGCTTAGTCATTTGGGCATTTTGAAGAGTTATCAAGCACAGAATTTGAGAGGGCACTTGCCTCTGATCTCTTGGCCGGATGACTCTTCATCTCCGTTTCATCTTGGTACAGAGAACATCCATGGTCCGAGGGCAAGGAAGATGGAGCAGAAGGTGGGCAATGACAGAGGTGCAGCGACAATCGGTTCAAAATACCGTTTTGGAATTTGGGGAGTCTATCAGTCTTAA

Coding sequence (CDS)

ATGGTGGACGATGGTCGGGTGTTAGGGATCTCCTCGTTGGATGTTGACCATGTTGGTGTGGCTGACAAAATCAAAACCAACATTGTTATATATGGTCCGTGGCTTAGTCATTTGGGCATTTTGAAGAGTTATCAAGCACAGAATTTGAGAGGGCACTTGCCTCTGATCTCTTGGCCGGATGACTCTTCATCTCCGTTTCATCTTGGTACAGAGAACATCCATGGTCCGAGGGCAAGGAAGATGGAGCAGAAGGTGGGCAATGACAGAGGTGCAGCGACAATCGGTTCAAAATACCGTTTTGGAATTTGGGGAGTCTATCAGTCTTAA

Protein sequence

MVDDGRVLGISSLDVDHVGVADKIKTNIVIYGPWLSHLGILKSYQAQNLRGHLPLISWPDDSSSPFHLGTENIHGPRARKMEQKVGNDRGAATIGSKYRFGIWGVYQS

Homology

[Close]

BLAST of MS027351 vs. NCBI nr
Match: XP_022159860.1 (uncharacterized protein LOC111026150 [Momordica charantia])

HSP 1 Score: 64.3 bits (155), Expect = 7.3e-07
Identity = 42/101 (41.58%), Postives = 47/101 (46.53%), Query Frame = 0


Query: 1   MVDDGRVLGISSLDVDHVGVADKIKTNIVIYGPWLSHLGILKSYQAQNLRGHLPLISWPD 60
           M D   +  IS LD +   V DKIK NIV+YGPW  H  +LKSY AQN         W  
Sbjct: 1   MADSDWMSEISPLDANSAVVVDKIKANIVMYGPWHRHHDVLKSYHAQN---------W-- 60

Query: 61  DSSSPFHLGTENIHGPRARKMEQKVGNDRGAATIGSKYRFG 102
                             R MEQKVG+D GAATI S    G
Sbjct: 61  -----------------TRMMEQKVGDDGGAATIKSNTVLG 73

[Close]

BLAST of MS027351 vs. ExPASy TrEMBL
Match: A0A6J1DZZ2 (uncharacterized protein LOC111026150 OS=Momordica charantia OX=3673 GN=LOC111026150 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.5e-07
Identity = 42/101 (41.58%), Postives = 47/101 (46.53%), Query Frame = 0


Query: 1   MVDDGRVLGISSLDVDHVGVADKIKTNIVIYGPWLSHLGILKSYQAQNLRGHLPLISWPD 60
           M D   +  IS LD +   V DKIK NIV+YGPW  H  +LKSY AQN         W  
Sbjct: 1   MADSDWMSEISPLDANSAVVVDKIKANIVMYGPWHRHHDVLKSYHAQN---------W-- 60

Query: 61  DSSSPFHLGTENIHGPRARKMEQKVGNDRGAATIGSKYRFG 102
                             R MEQKVG+D GAATI S    G
Sbjct: 61  -----------------TRMMEQKVGDDGGAATIKSNTVLG 73

The following BLAST results are available for this feature:

BLAST of MS027351 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159860.1	7.3e-07	41.58	uncharacterized protein LOC111026150 [Momordica charantia]	[more]

BLAST of MS027351 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS027351 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZZ2	3.5e-07	41.58	uncharacterized protein LOC111026150 OS=Momordica charantia OX=3673 GN=LOC111026...	[more]

BLAST of MS027351 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS027351.1	MS027351.1	mRNA