Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTCTACCCATGAACAGCTCTCCCCTCTTCTATCAGAAGTCCTTGCAATTCGAGAGGGTGTGCAACTGGTCAAACATTTGCAAGTGTCGTGGATTGTTGTTGAATCAAACTCTCCGGAAGCAATTTGGGCCATCAATGGCACAACGGTTTGGCAAAATGAAGCGAAAACCTGGTTCCTGGACATCCAACAAATTGCTGCCCATTTTGAATCGATAAATTCTGTGTATCACCAGAGAATTTCTAATGCTTTGACGCATTTGCTTGCCAGAAATGCAGTTCGTAGGTCTTCTTCTATTCTCTAG mRNA sequence
ATGATGTCTACCCATGAACAGCTCTCCCCTCTTCTATCAGAAGTCCTTGCAATTCGAGAGGGTGTGCAACTGGTCAAACATTTGCAAGTGTCGTGGATTGTTGTTGAATCAAACTCTCCGGAAGCAATTTGGGCCATCAATGGCACAACGGTTTGGCAAAATGAAGCGAAAACCTGGTTCCTGGACATCCAACAAATTGCTGCCCATTTTGAATCGATAAATTCTGTGTATCACCAGAGAATTTCTAATGCTTTGACGCATTTGCTTGCCAGAAATGCAGTTCGTAGGTCTTCTTCTATTCTCTAG Coding sequence (CDS)
ATGATGTCTACCCATGAACAGCTCTCCCCTCTTCTATCAGAAGTCCTTGCAATTCGAGAGGGTGTGCAACTGGTCAAACATTTGCAAGTGTCGTGGATTGTTGTTGAATCAAACTCTCCGGAAGCAATTTGGGCCATCAATGGCACAACGGTTTGGCAAAATGAAGCGAAAACCTGGTTCCTGGACATCCAACAAATTGCTGCCCATTTTGAATCGATAAATTCTGTGTATCACCAGAGAATTTCTAATGCTTTGACGCATTTGCTTGCCAGAAATGCAGTTCGTAGGTCTTCTTCTATTCTCTAG Protein sequence
MMSTHEQLSPLLSEVLAIREGVQLVKHLQVSWIVVESNSPEAIWAINGTTVWQNEAKTWFLDIQQIAAHFESINSVYHQRISNALTHLLARNAVRRSSSIL
Homology
BLAST of MS027315 vs. NCBI nr
Match:
XP_022158489.1 (uncharacterized protein LOC111024968 [Momordica charantia])
HSP 1 Score: 62.0 bits (149), Expect = 3.4e-06
Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 0
Query: 1 MMSTHEQLSPLLSEVLAIREGVQLVKHLQVSWIVVESNSPEAIWAINGTTVWQNEAKTWF 60 M+ H +PLL+++LAIREG+ L L V +VVE++S EA+ I + W+ EA +W Sbjct: 105 MVDFHMVKTPLLAKILAIREGLSLATRLGVHRVVVETDSLEALNLIGDKSPWKGEAVSWV 164 Query: 61 LDIQQIAAHFESINSVYHQRISNALTHLLARNAV 95 DI+ A F+ I + R SNA+ + L R + Sbjct: 165 EDIRAFARDFQEICFQHVFRESNAVAYHLGRETI 198
BLAST of MS027315 vs. ExPASy TrEMBL
Match:
A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)
HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 0
Query: 1 MMSTHEQLSPLLSEVLAIREGVQLVKHLQVSWIVVESNSPEAIWAINGTTVWQNEAKTWF 60 M+ H +PLL+++LAIREG+ L L V +VVE++S EA+ I + W+ EA +W Sbjct: 105 MVDFHMVKTPLLAKILAIREGLSLATRLGVHRVVVETDSLEALNLIGDKSPWKGEAVSWV 164 Query: 61 LDIQQIAAHFESINSVYHQRISNALTHLLARNAV 95 DI+ A F+ I + R SNA+ + L R + Sbjct: 165 EDIRAFARDFQEICFQHVFRESNAVAYHLGRETI 198
The following BLAST results are available for this feature:
Match Name E-value Identity Description
XP_022158489.1 3.4e-06 38.30 uncharacterized protein LOC111024968 [Momordica charantia] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A6J1DZK3 1.6e-06 38.30 uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
A T G A T G T C T A C C C A T G A A C A G C T C T C C C C T C T T C T A T C A G A A G T C C T T G C A A T T C G A G A G G G T G T G C A A C T G G T C A A A C A T T T G C A A G T G T C G T G G A T T G T T G T T G A A T C A A A C T C T C C G G A A G C A A T T T G G G C C A T C A A T G G C A C A A C G G T T T G G C A A A A T G A A G C G A A A A C C T G G T T C C T G G A C A T C C A A C A A A T T G C T G C C C A T T T T G A A T C G A T A A A T T C T G T G T A T C A C C A G A G A A T T T C T A A T G C T T T G A C G C A T T T G C T T G C C A G A A A T G C A G T T C G T A G G T C T T C T T C T A T T C T C T A G 50 100 150 200 250 300 Expect = 5.0E-6 / Score = 28.5 Expect = 3.6E-10 / Score = 39.7 Sequence G3DSA:3.30.420.10 PF13456
IPR Term IPR Description Source Source Term Source Description Alignment
IPR036397 Ribonuclease H superfamily GENE3D 3.30.420.10 coord: 4..99 e-value: 5.0E-6 score: 28.5
IPR002156 Ribonuclease H domain PFAM PF13456 RVT_3 coord: 5..93 e-value: 3.6E-10 score: 39.7
Relationships
The following mRNA feature(s) are a part of this gene:
Feature Name Unique Name Type
MS027315.1 MS027315.1 mRNA
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676
nucleic acid binding
molecular_function
GO:0004523
RNA-DNA hybrid ribonuclease activity