MS026368 (gene) Bitter gourd (TR) v1

Overview


Name	MS026368
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Phorbol-ester/DAG-type domain-containing protein
Location	scaffold459: 805174 .. 805596 (+)
RNA-Seq Expression	MS026368
Synteny	MS026368

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCCACAAATCTTACCAATTTCCCACGAATTCTTCCCTAGTTCTTTCACATTCAAATTCCTCGGGACCTCGCCAAAGGCCTGCCACGATGAATGCAAGAGAAAGTGCAACGCTTATCGAAAGTCCATTGATGTGGATTTGTGTATCATTGCCGGAGTCAGGACTTGGACCTCCACCCCTGTTGCAAAAACCTCAAAAGAAAGTATGAAATTGAAGACGTGGAGTTCAATCTCTAGAAGAAGGTTGGAGGGAAATGCCTGTGGTGTAAGAGGAAGAGCGTTAAAGACGGGACGACAATGGATGATCCTACATATCGAAGTGCGGGGACTACCATTTCCATGTGGCATGTGTCATAGAAATAGCCTTAGAGGAATGGAACAAGAGCGAAGGCGGCGACAGCAGCAACAACAACGTGAATAA

mRNA sequence

ATGTTTCCACAAATCTTACCAATTTCCCACGAATTCTTCCCTAGTTCTTTCACATTCAAATTCCTCGGGACCTCGCCAAAGGCCTGCCACGATGAATGCAAGAGAAAGTGCAACGCTTATCGAAAGTCCATTGATGTGGATTTGTGTATCATTGCCGGAGTCAGGACTTGGACCTCCACCCCTGTTGCAAAAACCTCAAAAGAAAGTATGAAATTGAAGACGTGGAGTTCAATCTCTAGAAGAAGGTTGGAGGGAAATGCCTGTGGTGTAAGAGGAAGAGCGTTAAAGACGGGACGACAATGGATGATCCTACATATCGAAGTGCGGGGACTACCATTTCCATGTGGCATGTGTCATAGAAATAGCCTTAGAGGAATGGAACAAGAGCGAAGGCGGCGACAGCAGCAACAACAACGTGAATAA

Coding sequence (CDS)

ATGTTTCCACAAATCTTACCAATTTCCCACGAATTCTTCCCTAGTTCTTTCACATTCAAATTCCTCGGGACCTCGCCAAAGGCCTGCCACGATGAATGCAAGAGAAAGTGCAACGCTTATCGAAAGTCCATTGATGTGGATTTGTGTATCATTGCCGGAGTCAGGACTTGGACCTCCACCCCTGTTGCAAAAACCTCAAAAGAAAGTATGAAATTGAAGACGTGGAGTTCAATCTCTAGAAGAAGGTTGGAGGGAAATGCCTGTGGTGTAAGAGGAAGAGCGTTAAAGACGGGACGACAATGGATGATCCTACATATCGAAGTGCGGGGACTACCATTTCCATGTGGCATGTGTCATAGAAATAGCCTTAGAGGAATGGAACAAGAGCGAAGGCGGCGACAGCAGCAACAACAACGTGAATAA

Protein sequence

MFPQILPISHEFFPSSFTFKFLGTSPKACHDECKRKCNAYRKSIDVDLCIIAGVRTWTSTPVAKTSKESMKLKTWSSISRRRLEGNACGVRGRALKTGRQWMILHIEVRGLPFPCGMCHRNSLRGMEQERRRRQQQQQRE

Homology

[Close]

BLAST of MS026368 vs. NCBI nr
Match: KAA0037668.1 (uncharacterized protein E6C27_scaffold277G003360 [Cucumis melo var. makuwa] >TYK22811.1 uncharacterized protein E5676_scaffold311G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-06
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 1  MFPQILPISHEFFPSSFTFKFLGTSPKACHDECKRKCNAYRKSID 46
          MFPQ  P+ HEFFP S TFKFL T P+ACHDECKR C+A  K I+
Sbjct: 52 MFPQNSPVFHEFFPRS-TFKFLKTPPRACHDECKRICDACTKPIN 95

[Close]

BLAST of MS026368 vs. NCBI nr
Match: XP_022133598.1 (uncharacterized protein LOC111006137, partial [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 3.6e-06
Identity = 29/45 (64.44%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 1  MFPQILPISHEFFPSSFTFKFLGTSPKACHDECKRKCNAYRKSID 46
          MFPQ  P  HEFFP S TFKFL T PKACHD CK +C A R  I+
Sbjct: 39 MFPQTSPFRHEFFPGS-TFKFLRTPPKACHDHCKLQCEACRMDIN 82

[Close]

BLAST of MS026368 vs. NCBI nr
Match: XP_022133591.1 (uncharacterized protein LOC111006130 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-05
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 2  FPQILPISHEFFPSSFTFKFLGTSPKACHDECKRKCNAYRKSID 46
          FP+  PISH+FFP+S TF F    PKACHD+C+R C+A RK I+
Sbjct: 34 FPETWPISHQFFPNS-TFNFFRIPPKACHDDCRRLCDACRKPIN 76

[Close]

BLAST of MS026368 vs. NCBI nr
Match: XP_008458930.1 (PREDICTED: uncharacterized protein LOC103498190 [Cucumis melo] >KAA0037669.1 uncharacterized protein E6C27_scaffold277G003370 [Cucumis melo var. makuwa] >TYK22812.1 uncharacterized protein E5676_scaffold311G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-05
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 1  MFPQILPISHEFFPSSFTFKFLGTSPKACHDECKRKCNAYRKSID 46
          MFPQ  P  HEFFP S  F+FL T PKACHD+CK+ C+A  K+I+
Sbjct: 52 MFPQDSPTFHEFFPQS-AFEFLKTPPKACHDQCKKFCDACTKTIN 95

[Close]

BLAST of MS026368 vs. NCBI nr
Match: XP_038891268.1 (uncharacterized protein LOC120080612 [Benincasa hispida])

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-05
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 1  MFPQILPISHEFFPSSFTFKFLGTSPKACHDECKRKCNAYRKSID 46
          MFP+  PISHEFFP S TFKF    P+ACHD+C+R C+A  K I+
Sbjct: 52 MFPKNSPISHEFFPRS-TFKFFKIPPRACHDKCRRICDACTKPIN 95

[Close]

BLAST of MS026368 vs. ExPASy TrEMBL
Match: A0A5A7T4E4 (Phorbol-ester/DAG-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00540 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.0e-07
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 1  MFPQILPISHEFFPSSFTFKFLGTSPKACHDECKRKCNAYRKSID 46
          MFPQ  P+ HEFFP S TFKFL T P+ACHDECKR C+A  K I+
Sbjct: 52 MFPQNSPVFHEFFPRS-TFKFLKTPPRACHDECKRICDACTKPIN 95

[Close]

BLAST of MS026368 vs. ExPASy TrEMBL
Match: A0A6J1BZK4 (uncharacterized protein LOC111006137 OS=Momordica charantia OX=3673 GN=LOC111006137 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-06
Identity = 29/45 (64.44%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 1  MFPQILPISHEFFPSSFTFKFLGTSPKACHDECKRKCNAYRKSID 46
          MFPQ  P  HEFFP S TFKFL T PKACHD CK +C A R  I+
Sbjct: 39 MFPQTSPFRHEFFPGS-TFKFLRTPPKACHDHCKLQCEACRMDIN 82

[Close]

BLAST of MS026368 vs. ExPASy TrEMBL
Match: A0A6J1BVJ4 (uncharacterized protein LOC111006130 OS=Momordica charantia OX=3673 GN=LOC111006130 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 2  FPQILPISHEFFPSSFTFKFLGTSPKACHDECKRKCNAYRKSID 46
          FP+  PISH+FFP+S TF F    PKACHD+C+R C+A RK I+
Sbjct: 34 FPETWPISHQFFPNS-TFNFFRIPPKACHDDCRRLCDACRKPIN 76

[Close]

BLAST of MS026368 vs. ExPASy TrEMBL
Match: A0A5A7T8P1 (Phorbol-ester/DAG-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00550 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-05
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 1  MFPQILPISHEFFPSSFTFKFLGTSPKACHDECKRKCNAYRKSID 46
          MFPQ  P  HEFFP S  F+FL T PKACHD+CK+ C+A  K+I+
Sbjct: 52 MFPQDSPTFHEFFPQS-AFEFLKTPPKACHDQCKKFCDACTKTIN 95

[Close]

BLAST of MS026368 vs. ExPASy TrEMBL
Match: A0A1S3C8J6 (uncharacterized protein LOC103498190 OS=Cucumis melo OX=3656 GN=LOC103498190 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-05
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 1  MFPQILPISHEFFPSSFTFKFLGTSPKACHDECKRKCNAYRKSID 46
          MFPQ  P  HEFFP S  F+FL T PKACHD+CK+ C+A  K+I+
Sbjct: 52 MFPQDSPTFHEFFPQS-AFEFLKTPPKACHDQCKKFCDACTKTIN 95

The following BLAST results are available for this feature:

BLAST of MS026368 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037668.1	1.2e-06	66.67	uncharacterized protein E6C27_scaffold277G003360 [Cucumis melo var. makuwa] >TYK...	[more]
XP_022133598.1	3.6e-06	64.44	uncharacterized protein LOC111006137, partial [Momordica charantia]	[more]
XP_022133591.1	2.3e-05	59.09	uncharacterized protein LOC111006130 [Momordica charantia]	[more]
XP_008458930.1	4.0e-05	60.00	PREDICTED: uncharacterized protein LOC103498190 [Cucumis melo] >KAA0037669.1 unc...	[more]
XP_038891268.1	5.2e-05	60.00	uncharacterized protein LOC120080612 [Benincasa hispida]	[more]

BLAST of MS026368 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS026368 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T4E4	6.0e-07	66.67	Phorbol-ester/DAG-type domain-containing protein OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1BZK4	1.7e-06	64.44	uncharacterized protein LOC111006137 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1BVJ4	1.1e-05	59.09	uncharacterized protein LOC111006130 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A5A7T8P1	1.9e-05	60.00	Phorbol-ester/DAG-type domain-containing protein OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3C8J6	1.9e-05	60.00	uncharacterized protein LOC103498190 OS=Cucumis melo OX=3656 GN=LOC103498190 PE=...	[more]

BLAST of MS026368 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS026368.1	MS026368.1	mRNA