MS026294 (gene) Bitter gourd (TR) v1

Overview
NameMS026294
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold317: 208149 .. 208918 (-)
RNA-Seq ExpressionMS026294
SyntenyMS026294
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGGGAAAATCCTGTAACAAAAGAAAGAGACAAAGGGAAGAAGATTGTAGACGATCCGCTAGAAGAAGAAGTTTGGGAAGAGGCCCGTCCAGTTGGCGATGGCGTGACCGACGAAGAAGGAAATGACGGGCAAGCGCCATACAAGAAAACGAGAAAGAATAAATTCAAGAAGAGGATCAGTAGACGGTTGAGGATGCTCGGTGATCAAGTTGGTACTATTGAGGCCACCTTGGGTGGCATTGAAGACACCTTAAAAGATATCCAGAGGTACCTTAAGAAAATGCCAAAGGTATGATTTTATTATATAAATCTAAATCAGTTTAGTTTTTACTATTTTACCACAATAACTCTTGTTGATCGATTTTTTTGTTCAGGGTAAGTTCCCCCATCCGAGCAAATATTTTGGAGGTAGGGGTGGGCCAGATGAAGATGGTCTCTCGGGTGAAAGGCCTGATGAGGACCCGAAGATAGGTGGGGGTCCGAGCAATATGGATGAGGACCGCTTCTTCATCCCTGCGAATCTCAGTGTGTACCTGTTCCACATCAGGCTCAGACTCTTCATTAAGTGTATTGTCATTGTCACCATTCCCATATTCTGCTTCAGATACTCCTTCTTCTGACTCTCCCAACGAGTCATATGATTCATCACTTTCATCTACGTTATCATTCCACAATCCCAGCACATCCCAATCACATACCCTGTCATCTCTCAAGTTACATGGAACAACATCTTATCCCAATGGTGTTAAACCCGCTATATCATGA

mRNA sequence

ATGAAAAGGGAAAATCCTGTAACAAAAGAAAGAGACAAAGGGAAGAAGATTGTAGACGATCCGCTAGAAGAAGAAGTTTGGGAAGAGGCCCGTCCAGTTGGCGATGGCGTGACCGACGAAGAAGGAAATGACGGGCAAGCGCCATACAAGAAAACGAGAAAGAATAAATTCAAGAAGAGGATCAGTAGACGGTTGAGGATGCTCGGTGATCAAGTTGGTACTATTGAGGCCACCTTGGGTGGCATTGAAGACACCTTAAAAGATATCCAGAGGTACCTTAAGAAAATGCCAAAGGGTAAGTTCCCCCATCCGAGCAAATATTTTGGAGGTAGGGGTGGGCCAGATGAAGATGGTCTCTCGGGTGAAAGGCCTGATGAGGACCCGAAGATAGGTGGGGGTCCGAGCAATATGGATGAGGACCGCTTCTTCATCCCTGCGAATCTCAATACTCCTTCTTCTGACTCTCCCAACGAGTCATATGATTCATCACTTTCATCTACGTTATCATTCCACAATCCCAGCACATCCCAATCACATACCCTGTCATCTCTCAAGTTACATGGAACAACATCTTATCCCAATGGTGTTAAACCCGCTATATCATGA

Coding sequence (CDS)

ATGAAAAGGGAAAATCCTGTAACAAAAGAAAGAGACAAAGGGAAGAAGATTGTAGACGATCCGCTAGAAGAAGAAGTTTGGGAAGAGGCCCGTCCAGTTGGCGATGGCGTGACCGACGAAGAAGGAAATGACGGGCAAGCGCCATACAAGAAAACGAGAAAGAATAAATTCAAGAAGAGGATCAGTAGACGGTTGAGGATGCTCGGTGATCAAGTTGGTACTATTGAGGCCACCTTGGGTGGCATTGAAGACACCTTAAAAGATATCCAGAGGTACCTTAAGAAAATGCCAAAGGGTAAGTTCCCCCATCCGAGCAAATATTTTGGAGGTAGGGGTGGGCCAGATGAAGATGGTCTCTCGGGTGAAAGGCCTGATGAGGACCCGAAGATAGGTGGGGGTCCGAGCAATATGGATGAGGACCGCTTCTTCATCCCTGCGAATCTCAATACTCCTTCTTCTGACTCTCCCAACGAGTCATATGATTCATCACTTTCATCTACGTTATCATTCCACAATCCCAGCACATCCCAATCACATACCCTGTCATCTCTCAAGTTACATGGAACAACATCTTATCCCAATGGTGTTAAACCCGCTATATCATGA

Protein sequence

MKRENPVTKERDKGKKIVDDPLEEEVWEEARPVGDGVTDEEGNDGQAPYKKTRKNKFKKRISRRLRMLGDQVGTIEATLGGIEDTLKDIQRYLKKMPKGKFPHPSKYFGGRGGPDEDGLSGERPDEDPKIGGGPSNMDEDRFFIPANLNTPSSDSPNESYDSSLSSTLSFHNPSTSQSHTLSSLKLHGTTSYPNGVKPAIS
Homology
BLAST of MS026294 vs. NCBI nr
Match: XP_022153201.1 (uncharacterized protein LOC111020757 [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-22
Identity = 71/140 (50.71%), Postives = 86/140 (61.43%), Query Frame = 0

Query: 6   PVTKERDKGKKIVDDPLEEEVWEEARPVGDGVTDEE----GNDGQAPYKKTRKNKFKKRI 65
           P + ER     + D P + E+     PV D    +E     NDG+   K+ +KNKFKKRI
Sbjct: 321 PASPER---AAVPDPPADVEMGPLEDPVVDAHAVDEARPSANDGEGLEKRLKKNKFKKRI 380

Query: 66  SRRLRMLGDQVGTIEATLGGIEDTLKDIQRYLKKMPKGKFPHPSKYFGGRGGPDEDGLSG 125
           SRRL+ L + VG IE  LG     LK IQ YLKK+ KGKFP  SKYFGG GGPD+DG S 
Sbjct: 381 SRRLKRLDNCVGAIEDKLGDFGVALKGIQIYLKKLAKGKFPDSSKYFGGGGGPDDDGPSD 440

Query: 126 ERPDEDPKIGGGPSNMDEDR 142
           +RPDE PK  GG  +MDED+
Sbjct: 441 QRPDESPKPDGGRKSMDEDQ 457

BLAST of MS026294 vs. NCBI nr
Match: XP_022154965.1 (uncharacterized protein LOC111022110 [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-08
Identity = 59/158 (37.34%), Postives = 83/158 (52.53%), Query Frame = 0

Query: 3   RENPVTKERDKGKKIVDDPLE-EEVWEEARPVGDGVTD-----EEGNDGQAPYKKT--RK 62
           +++PVT E       V D +E ++V ++A P+ D VT+     + G D   P K T  +K
Sbjct: 173 QKSPVTSE-------VGDLVELDDVAKDASPLVDRVTEDIIGTDGGQDQLLPQKGTEKKK 232

Query: 63  NKFKKRISRRLRMLGDQVGTIEATLGGIEDTLKDIQRYLKKMPKGKFPHPSKYFGGRGGP 122
            K K + SR LR LGD+V  IE TL G+   +KDI++++K++ K      +KY    G P
Sbjct: 233 KKSKHKWSRELRRLGDRVTAIETTLTGMTTDIKDIKKFMKRLTKVMSKGQNKYDRRGGVP 292

Query: 123 DEDGLSGERP-----------DEDPKIGGGPSNMDEDR 142
           D+DG SG R            DEDPK G  P   DE R
Sbjct: 293 DQDGSSGGRDPSGRNEEDMDMDEDPKTGKEPKTGDEPR 323

BLAST of MS026294 vs. ExPASy TrEMBL
Match: A0A6J1DJX9 (uncharacterized protein LOC111020757 OS=Momordica charantia OX=3673 GN=LOC111020757 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 71/140 (50.71%), Postives = 86/140 (61.43%), Query Frame = 0

Query: 6   PVTKERDKGKKIVDDPLEEEVWEEARPVGDGVTDEE----GNDGQAPYKKTRKNKFKKRI 65
           P + ER     + D P + E+     PV D    +E     NDG+   K+ +KNKFKKRI
Sbjct: 321 PASPER---AAVPDPPADVEMGPLEDPVVDAHAVDEARPSANDGEGLEKRLKKNKFKKRI 380

Query: 66  SRRLRMLGDQVGTIEATLGGIEDTLKDIQRYLKKMPKGKFPHPSKYFGGRGGPDEDGLSG 125
           SRRL+ L + VG IE  LG     LK IQ YLKK+ KGKFP  SKYFGG GGPD+DG S 
Sbjct: 381 SRRLKRLDNCVGAIEDKLGDFGVALKGIQIYLKKLAKGKFPDSSKYFGGGGGPDDDGPSD 440

Query: 126 ERPDEDPKIGGGPSNMDEDR 142
           +RPDE PK  GG  +MDED+
Sbjct: 441 QRPDESPKPDGGRKSMDEDQ 457

BLAST of MS026294 vs. ExPASy TrEMBL
Match: A0A6J1DL40 (uncharacterized protein LOC111022110 OS=Momordica charantia OX=3673 GN=LOC111022110 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 59/158 (37.34%), Postives = 83/158 (52.53%), Query Frame = 0

Query: 3   RENPVTKERDKGKKIVDDPLE-EEVWEEARPVGDGVTD-----EEGNDGQAPYKKT--RK 62
           +++PVT E       V D +E ++V ++A P+ D VT+     + G D   P K T  +K
Sbjct: 173 QKSPVTSE-------VGDLVELDDVAKDASPLVDRVTEDIIGTDGGQDQLLPQKGTEKKK 232

Query: 63  NKFKKRISRRLRMLGDQVGTIEATLGGIEDTLKDIQRYLKKMPKGKFPHPSKYFGGRGGP 122
            K K + SR LR LGD+V  IE TL G+   +KDI++++K++ K      +KY    G P
Sbjct: 233 KKSKHKWSRELRRLGDRVTAIETTLTGMTTDIKDIKKFMKRLTKVMSKGQNKYDRRGGVP 292

Query: 123 DEDGLSGERP-----------DEDPKIGGGPSNMDEDR 142
           D+DG SG R            DEDPK G  P   DE R
Sbjct: 293 DQDGSSGGRDPSGRNEEDMDMDEDPKTGKEPKTGDEPR 323

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022153201.13.9e-2250.71uncharacterized protein LOC111020757 [Momordica charantia][more]
XP_022154965.12.5e-0837.34uncharacterized protein LOC111022110 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DJX91.9e-2250.71uncharacterized protein LOC111020757 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1DL401.2e-0837.34uncharacterized protein LOC111022110 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..201

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS026294.1MS026294.1mRNA