MS026282 (gene) Bitter gourd (TR) v1

Overview
NameMS026282
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGlycos_transf_1 domain-containing protein
Locationscaffold63: 2933298 .. 2933567 (+)
RNA-Seq ExpressionMS026282
SyntenyMS026282
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAGCGGACCATGCTCCTTAACGATGTCGAAGATGACTCTAGTAATCGTCTGCGTTTGCTCCGGTGGAGTATTTAGCTCTATCGGCTTCATCTTCGGCTTTGGCTTCGTCGCGAAATACCTTATTGCAGTCCCAAACATACTGATTTTGTTACTCAGAAAACCAGACGGAGCCGATAATCCCGCTGATTCTTCTCGTATGTGCTTCGTTTGTCGGAAAATTCCTGCCGTAGGGTTTGGGATTGAGGAGAATGGTCGCAGGCGGTGA

mRNA sequence

ATGGTTAGCGGACCATGCTCCTTAACGATGTCGAAGATGACTCTAGTAATCGTCTGCGTTTGCTCCGGTGGAGTATTTAGCTCTATCGGCTTCATCTTCGGCTTTGGCTTCGTCGCGAAATACCTTATTGCAGTCCCAAACATACTGATTTTGTTACTCAGAAAACCAGACGGAGCCGATAATCCCGCTGATTCTTCTCGTATGTGCTTCGTTTGTCGGAAAATTCCTGCCGTAGGGTTTGGGATTGAGGAGAATGGTCGCAGGCGGTGA

Coding sequence (CDS)

ATGGTTAGCGGACCATGCTCCTTAACGATGTCGAAGATGACTCTAGTAATCGTCTGCGTTTGCTCCGGTGGAGTATTTAGCTCTATCGGCTTCATCTTCGGCTTTGGCTTCGTCGCGAAATACCTTATTGCAGTCCCAAACATACTGATTTTGTTACTCAGAAAACCAGACGGAGCCGATAATCCCGCTGATTCTTCTCGTATGTGCTTCGTTTGTCGGAAAATTCCTGCCGTAGGGTTTGGGATTGAGGAGAATGGTCGCAGGCGGTGA

Protein sequence

MVSGPCSLTMSKMTLVIVCVCSGGVFSSIGFIFGFGFVAKYLIAVPNILILLLRKPDGADNPADSSRMCFVCRKIPAVGFGIEENGRRR
Homology
[Close]
BLAST of MS026282 vs. NCBI nr
Match: KAF9682247.1 (hypothetical protein SADUNF_Sadunf05G0089000 [Salix dunnii])

HSP 1 Score: 70.5 bits (171), Expect = 8.4e-09
Identity = 37/49 (75.51%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 1   MVSGPCSLTMSKMTLVIVCVCSGGVFSSIGFIFGFGFVAKYLIAVPNIL 50
           MV GPCS TMS + LVIV VCSGGVFSSIGFIFG GFV KYLIA  N++
Sbjct: 81  MVRGPCSFTMSIIALVIVWVCSGGVFSSIGFIFGLGFVEKYLIAALNMI 129

[Close]
BLAST of MS026282 vs. NCBI nr
Match: KAB5556834.1 (hypothetical protein DKX38_007743 [Salix brachista])

HSP 1 Score: 68.2 bits (165), Expect = 4.2e-08
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 1   MVSGPCSLTMSKMTLVIVCVCSGGVFSSIGFIFGFGFVAKYLIAVPNIL 50
           MV GPCS TMS + LVIV VCSGGV SSIGFIFG GFV KYLIA  N++
Sbjct: 618 MVRGPCSFTMSIIALVIVWVCSGGVLSSIGFIFGLGFVEKYLIAALNMI 666

[Close]
BLAST of MS026282 vs. ExPASy TrEMBL
Match: A0A5N5MP09 (Glycos_transf_1 domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_007743 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 1   MVSGPCSLTMSKMTLVIVCVCSGGVFSSIGFIFGFGFVAKYLIAVPNIL 50
           MV GPCS TMS + LVIV VCSGGV SSIGFIFG GFV KYLIA  N++
Sbjct: 618 MVRGPCSFTMSIIALVIVWVCSGGVLSSIGFIFGLGFVEKYLIAALNMI 666

[Close]
BLAST of MS026282 vs. ExPASy TrEMBL
Match: A0A6N2N3L7 (Glycos_transf_1 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS459961 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 1   MVSGPCSLTMSKMTLVIVCVCSGGVFSSIGFIFGFGFVAKYLIAVPNIL 50
           MV GPCS TMS + LVIV VCSGGV SSIGFIFG GFV KYLIA  N++
Sbjct: 568 MVRGPCSFTMSIIALVIVWVCSGGVLSSIGFIFGLGFVEKYLIAALNMI 616

The following BLAST results are available for this feature:
BLAST of MS026282 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF9682247.18.4e-0975.51hypothetical protein SADUNF_Sadunf05G0089000 [Salix dunnii][more]
KAB5556834.14.2e-0873.47hypothetical protein DKX38_007743 [Salix brachista][more]
BLAST of MS026282 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS026282 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5N5MP092.0e-0873.47Glycos_transf_1 domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38... [more]
A0A6N2N3L72.0e-0873.47Glycos_transf_1 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LO... [more]
BLAST of MS026282 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS026282.1MS026282.1mRNA