MS026247 (gene) Bitter gourd (TR) v1

Overview
NameMS026247
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold63: 415467 .. 415862 (-)
RNA-Seq ExpressionMS026247
SyntenyMS026247
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAATCCGAGTCCGAAGATCGATTTCTCCATTCCCAAGCTCTCTCTGTTCAATCGGATCGAATCCAGATGCAGAATCCTCCCTCCAAACCACACTCTTATCAATCCCTCCGCCTTCCCGATTTCCCGCTGCGATTCCGTGCTTTTCGCCGTGATTCTGAAGAACGGCCCCAAGGTTTGGAGCCGGAGGTCCAGATTCTGGGCCGCGCCGGCCGCCAAAATCTCACGCATCGTCGGTATGTTATCTTCTCTGGATTTCAGTGGTTTTGGCGATTTTGAAGGGGCTGGTAATTGGGAATTAGGGCATTTGGATGAGGAAGAGGAGGAGGCGTGGATTTTACTAAGGAATCTTGGAATTGGCGAGAAATTTTGGGGGATTCGGGAAATTGTTTGA

mRNA sequence

ATGAACAATCCGAGTCCGAAGATCGATTTCTCCATTCCCAAGCTCTCTCTGTTCAATCGGATCGAATCCAGATGCAGAATCCTCCCTCCAAACCACACTCTTATCAATCCCTCCGCCTTCCCGATTTCCCGCTGCGATTCCGTGCTTTTCGCCGTGATTCTGAAGAACGGCCCCAAGGTTTGGAGCCGGAGGTCCAGATTCTGGGCCGCGCCGGCCGCCAAAATCTCACGCATCGTCGGTATGTTATCTTCTCTGGATTTCAGTGGTTTTGGCGATTTTGAAGGGGCTGGTAATTGGGAATTAGGGCATTTGGATGAGGAAGAGGAGGAGGCGTGGATTTTACTAAGGAATCTTGGAATTGGCGAGAAATTTTGGGGGATTCGGGAAATTGTTTGA

Coding sequence (CDS)

ATGAACAATCCGAGTCCGAAGATCGATTTCTCCATTCCCAAGCTCTCTCTGTTCAATCGGATCGAATCCAGATGCAGAATCCTCCCTCCAAACCACACTCTTATCAATCCCTCCGCCTTCCCGATTTCCCGCTGCGATTCCGTGCTTTTCGCCGTGATTCTGAAGAACGGCCCCAAGGTTTGGAGCCGGAGGTCCAGATTCTGGGCCGCGCCGGCCGCCAAAATCTCACGCATCGTCGGTATGTTATCTTCTCTGGATTTCAGTGGTTTTGGCGATTTTGAAGGGGCTGGTAATTGGGAATTAGGGCATTTGGATGAGGAAGAGGAGGAGGCGTGGATTTTACTAAGGAATCTTGGAATTGGCGAGAAATTTTGGGGGATTCGGGAAATTGTTTGA

Protein sequence

MNNPSPKIDFSIPKLSLFNRIESRCRILPPNHTLINPSAFPISRCDSVLFAVILKNGPKVWSRRSRFWAAPAAKISRIVGMLSSLDFSGFGDFEGAGNWELGHLDEEEEEAWILLRNLGIGEKFWGIREIV
Homology
[Close]
BLAST of MS026247 vs. NCBI nr
Match: ERN02758.1 (hypothetical protein AMTR_s00086p00036940 [Amborella trichopoda])

HSP 1 Score: 68.6 bits (166), Expect = 4.7e-08
Identity = 45/92 (48.91%), Postives = 50/92 (54.35%), Query Frame = 0 

Query: 2   NNPSPKIDFSIPKLSLFNRIESRCR----ILPPNHTLINPSAFPISRCDSVLFAVILKNG 61
           N PSPKID SIP +SL   IESRC+    IL  N +L+ PSA P S   + L AV LK G
Sbjct: 23  NKPSPKIDLSIPIVSLLILIESRCKILSIILSLNQSLMKPSALPSSCWVAKLVAVTLKKG 82

Query: 62  PKVWSRRSRFWAAPAAKISRIVGMLSSLDFSG 90
           PKV      FW    A  S I GM S L   G
Sbjct: 83  PKVLRWSFMFWLREEAINSDIEGMGSLLQTVG 114

[Close]
BLAST of MS026247 vs. NCBI nr
Match: KAG9129828.1 (hypothetical protein Leryth_016016 [Lithospermum erythrorhizon])

HSP 1 Score: 54.3 bits (129), Expect = 9.2e-04
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 0 

Query: 27 ILPPNHTLINPSAFPISRCDSVLFAVILKNGPKVWSRRSRFWAAPAAKISRIVG 81
          I P NHTL +PSA P S   S+L AV  KNGPKV + RSRF A   + IS I G
Sbjct: 16 IFPSNHTLSSPSALPSSLPVSILLAVTRKNGPKVCNCRSRFCALDVSMISDIDG 69

[Close]
BLAST of MS026247 vs. ExPASy TrEMBL
Match: W1P4B8 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00086p00036940 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.3e-08
Identity = 45/92 (48.91%), Postives = 50/92 (54.35%), Query Frame = 0 

Query: 2   NNPSPKIDFSIPKLSLFNRIESRCR----ILPPNHTLINPSAFPISRCDSVLFAVILKNG 61
           N PSPKID SIP +SL   IESRC+    IL  N +L+ PSA P S   + L AV LK G
Sbjct: 23  NKPSPKIDLSIPIVSLLILIESRCKILSIILSLNQSLMKPSALPSSCWVAKLVAVTLKKG 82

Query: 62  PKVWSRRSRFWAAPAAKISRIVGMLSSLDFSG 90
           PKV      FW    A  S I GM S L   G
Sbjct: 83  PKVLRWSFMFWLREEAINSDIEGMGSLLQTVG 114

The following BLAST results are available for this feature:
BLAST of MS026247 vs. NCBI nr
Match NameE-valueIdentityDescription
ERN02758.14.7e-0848.91hypothetical protein AMTR_s00086p00036940 [Amborella trichopoda][more]
KAG9129828.19.2e-0455.56hypothetical protein Leryth_016016 [Lithospermum erythrorhizon][more]
BLAST of MS026247 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS026247 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
W1P4B82.3e-0848.91Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00086p00036940... [more]
BLAST of MS026247 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS026247.1MS026247.1mRNA