MS025981 (gene) Bitter gourd (TR) v1

Overview
NameMS025981
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold35: 2359351 .. 2360741 (-)
RNA-Seq ExpressionMS025981
SyntenyMS025981
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTCGGCTTTTTCTCCTTGGAGTCATGTTGGAATGCTCAAATTCCATCAACTACAGCGATAAAGACAGGGAGGGAGGGAGGGAGGGAGGGCGAGGGGAGAGCTAATAGCAGGTGCAGTGGGCAGAGAGCCTACAAAGACATATCAGTATCGAATATTGTTGCGGCAAAAGTAACGAAGGAAGCTGCATATATTCAACGGTATGTCTTTGGTCTTTACCTCTTTCATGAGCGAAAAAATATTTTATTATCCACCTAACTTCTTAACCATTCTTTACGGTTCCTAATAGATTCATTCGTTTTTAAAAAGTAAGGAATAAACTTCCTTTTTAACATTCTTAAAAAATCAGTAAATTTTACACAGGAAAGGAGTAAAACGCTCCAAACTTTTATCCGTTAGGAATTTAACTGAAATCCCGTTTGTTTTTCAGTCACTTCGAAAGTATAATGGAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTAACAGTTACTGAGCCTTCTTATGGTTAAGAATAATAGAAATCAGTAGGTCAAAACACATTTTAGTTCTTATATTTTTATTTTTGGCTTGTGTACTTATTTAAGAGAGTAATATTCTATATTAACTGATGTAATTGTATTTTTAACGTTGAAAACTTGGTATTATATTTTTAAAATTACAGAAAATAGGTAAATACAAGGATTAAAGCACTAATCAAAATATAGAAACTAGGGTTGTGTTTTATCTTTAACCAAATTAATAGAATTAGTATATAGAATGGTGATTATGGAAACAGATTCAGTAAACCAAAAACTCTTGTACTGATCAATCAAATCAAAGTTTGGCCATCTTATCCATTGATTTGTCTTCTATATCAGGCAAAGTGGAGGAACTTGATTCTCTATAGAATTTCTAGGTCATAGAGCTCTCTCACTCTCTTCATTGCCCTTTTACTTTTTCATTTACATAATAATCTCTTTTTTGTCTCACTCATCCCCTCATCTATACACCTCTCTCCATCCCATAGAATCTTGGGGTCTTTTGCTATCCCCCATTGTGCAGAACTACATGCTGCTGCAAAAGGGAGATAGGGGGATCCCTTGGCTAATGACTTGTCACTCTAGCCAACTATGCAACCTTTGTCTCCTCTTTCAATTACTTCCTGTAGGGTCATTATCCCTATAAAAAGTGGGGATAATGGTCTGGGTTTCTTCATAGGCTAAAGTCTTCCATATGACATTTTCTCATGGTGGGGTCTTATTCAGTTTCTTTAATGGGCGACCACGAGCTGGGGATAGGATAGGATTTCTGGTGGACCCCAATGCCACGTGTCTAGATCATAGGGTGGTGATGATACAGTGGGACTGA

mRNA sequence

ATGATGGTCGGCTTTTTCTCCTTGGAGTCATGTTGGAATGCTCAAATTCCATCAACTACAGCGATAAAGACAGGGAGGGAGGGAGGGAGGGAGGGCGAGGGGAGAGCTAATAGCAGGTGCAGTGGGCAGAGAGCCTACAAAGACATATCAGTATCGAATATTGTTGCGGCAAAAGTAACGAAGGAAGCTGCATATATTCAACGTTTCTTTAATGGGCGACCACGAGCTGGGGATAGGATAGGATTTCTGGTGGACCCCAATGCCACGTGTCTAGATCATAGGGTGGTGATGATACAGTGGGACTGA

Coding sequence (CDS)

ATGATGGTCGGCTTTTTCTCCTTGGAGTCATGTTGGAATGCTCAAATTCCATCAACTACAGCGATAAAGACAGGGAGGGAGGGAGGGAGGGAGGGCGAGGGGAGAGCTAATAGCAGGTGCAGTGGGCAGAGAGCCTACAAAGACATATCAGTATCGAATATTGTTGCGGCAAAAGTAACGAAGGAAGCTGCATATATTCAACGTTTCTTTAATGGGCGACCACGAGCTGGGGATAGGATAGGATTTCTGGTGGACCCCAATGCCACGTGTCTAGATCATAGGGTGGTGATGATACAGTGGGACTGA

Protein sequence

MMVGFFSLESCWNAQIPSTTAIKTGREGGREGEGRANSRCSGQRAYKDISVSNIVAAKVTKEAAYIQRFFNGRPRAGDRIGFLVDPNATCLDHRVVMIQWD
Homology
[Close]
BLAST of MS025981 vs. NCBI nr
Match: KGN49203.1 (hypothetical protein Csa_002915 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 5.2e-07
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 26 REGGREGE-------GRANSRCSGQRAYKDISVSNIVAAKVTKEAAYIQRFFNG 73
          REG  EG+       GRANS CSGQRAY+DIS+SNIVAAKVTKE  Y+QR+  G
Sbjct: 29 REGVGEGKGERERKRGRANSNCSGQRAYRDISISNIVAAKVTKEGDYVQRYVFG 82

[Close]
BLAST of MS025981 vs. ExPASy TrEMBL
Match: A0A0A0KI11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517110 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-07
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 26 REGGREGE-------GRANSRCSGQRAYKDISVSNIVAAKVTKEAAYIQRFFNG 73
          REG  EG+       GRANS CSGQRAY+DIS+SNIVAAKVTKE  Y+QR+  G
Sbjct: 29 REGVGEGKGERERKRGRANSNCSGQRAYRDISISNIVAAKVTKEGDYVQRYVFG 82

The following BLAST results are available for this feature:
BLAST of MS025981 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49203.15.2e-0764.81hypothetical protein Csa_002915 [Cucumis sativus][more]
BLAST of MS025981 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS025981 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KI112.5e-0764.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517110 PE=4 SV=1[more]
BLAST of MS025981 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS025981.1MS025981.1mRNA