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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCCCGTCAATCTGTTTTTGTTCTTGCTCTCATCTTCGCCGCTGTTGTCGGTGCTGTTGCTCAAGCTCCGGCAACCTCCCCCACTGGTTCTCCAACGCTGATCAGCTCGTCGTCTGGTTCCGCCTCATCTTCTCCGACCGCCTCTTCAGAGGCTTCATCGCAGTCGTCTGTATCAGCATCTGATCCGTCGTCGACGGCTCCGATGAGCTCGCTTGGTTCTTACCCTTCCATAGCTTCTTCGCCGACCGGCGAGACTCCGGCCAGTTCTCCTTCTCAGGCTCCGACCGGCTCCCCTTTCGTGGCTCGTAGATTGTTTGGAAATTATTTTCTTGGCTGA mRNA sequence ATGGCCCGTCAATCTGTTTTTGTTCTTGCTCTCATCTTCGCCGCTGTTGTCGGTGCTGTTGCTCAAGCTCCGGCAACCTCCCCCACTGGTTCTCCAACGCTGATCAGCTCGTCGTCTGGTTCCGCCTCATCTTCTCCGACCGCCTCTTCAGAGGCTTCATCGCAGTCGTCTGTATCAGCATCTGATCCGTCGTCGACGGCTCCGATGAGCTCGCTTGGTTCTTACCCTTCCATAGCTTCTTCGCCGACCGGCGAGACTCCGGCCAGTTCTCCTTCTCAGGCTCCGACCGGCTCCCCTTTCGTGGCTCGTAGATTGTTTGGAAATTATTTTCTTGGCTGA Coding sequence (CDS) ATGGCCCGTCAATCTGTTTTTGTTCTTGCTCTCATCTTCGCCGCTGTTGTCGGTGCTGTTGCTCAAGCTCCGGCAACCTCCCCCACTGGTTCTCCAACGCTGATCAGCTCGTCGTCTGGTTCCGCCTCATCTTCTCCGACCGCCTCTTCAGAGGCTTCATCGCAGTCGTCTGTATCAGCATCTGATCCGTCGTCGACGGCTCCGATGAGCTCGCTTGGTTCTTACCCTTCCATAGCTTCTTCGCCGACCGGCGAGACTCCGGCCAGTTCTCCTTCTCAGGCTCCGACCGGCTCCCCTTTCGTGGCTCGTAGATTGTTTGGAAATTATTTTCTTGGCTGA Protein sequence MARQSVFVLALIFAAVVGAVAQAPATSPTGSPTLISSSSGSASSSPTASSEASSQSSVSASDPSSTAPMSSLGSYPSIASSPTGETPASSPSQAPTGSPFVARRLFGNYFLG
Homology
BLAST of MS025841 vs. NCBI nr
Match: XP_022154166.1 (putative protein TPRXL [Momordica charantia]) HSP 1 Score: 156.4 bits (394), Expect = 1.5e-34 Identity = 102/116 (87.93%), Postives = 105/116 (90.52%), Query Frame = 0 Query: 1 MARQSVFVLALIFAAVVGAVAQAPATSPTGSPTLISSSSGSASS----SPTASSEASSQS 60 MARQS+FVL LIF AVVGAVAQAPATSPT SPTLISSSSG ASS SPTASSEASSQS Sbjct: 1 MARQSLFVLGLIFTAVVGAVAQAPATSPTDSPTLISSSSGPASSSPSLSPTASSEASSQS 60
Query: 61 SVSASDPSSTAPMSSLGSYPSIASSPTGETPASSPSQAPTGSPFVARRLFGNYFLG 113 SVSAS PSS A MSSLGSYPSIASSPTGETPASSPS+APTGSPFVAR+LFGNYFLG Sbjct: 61 SVSASAPSSMATMSSLGSYPSIASSPTGETPASSPSKAPTGSPFVARKLFGNYFLG 116
BLAST of MS025841 vs. ExPASy TrEMBL
Match: A0A6J1DMX5 (Uncharacterized protein OS=Momordica charantia OX=3673 GN=LOC111021481 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 7.1e-35 Identity = 102/116 (87.93%), Postives = 105/116 (90.52%), Query Frame = 0 Query: 1 MARQSVFVLALIFAAVVGAVAQAPATSPTGSPTLISSSSGSASS----SPTASSEASSQS 60 MARQS+FVL LIF AVVGAVAQAPATSPT SPTLISSSSG ASS SPTASSEASSQS Sbjct: 1 MARQSLFVLGLIFTAVVGAVAQAPATSPTDSPTLISSSSGPASSSPSLSPTASSEASSQS 60
Query: 61 SVSASDPSSTAPMSSLGSYPSIASSPTGETPASSPSQAPTGSPFVARRLFGNYFLG 113 SVSAS PSS A MSSLGSYPSIASSPTGETPASSPS+APTGSPFVAR+LFGNYFLG Sbjct: 61 SVSASAPSSMATMSSLGSYPSIASSPTGETPASSPSKAPTGSPFVARKLFGNYFLG 116
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022154166.1 | 1.5e-34 | 87.93 | putative protein TPRXL [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DMX5 | 7.1e-35 | 87.93 | Uncharacterized protein OS=Momordica charantia OX=3673 GN=LOC111021481 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 24..100 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 24..97 |
Relationships
The following mRNA feature(s) are a part of this gene:
Feature Name | Unique Name | Type |
MS025841.1 | MS025841.1 | mRNA |
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