MS025316 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGTTTTTTGGGGATCTAAGAACTGAAGGGATTCTCAGATTCTGTGCGATTATTGGCCTTATTCTAACAGTTTGTTTGCTGGGTTTTGATAAACAAACTACTCAGATCTTTCATGTCGACAAAAAGGCCACTTTCAGAAGTTTGCGTTCTCTCATGTAAGTTTTCTCCCTTTAAATTTTATCTTTTACCAGTCGAGTTATACTCAAATTAGCAACGCTTCTATGGTTTGGTTCTCGCCGATAAAGCATTAATATTTCCAAATTTTATATATATGAATTGAACGAGTTAATATTAGTTAGAAATTAAGATTGAAGGTTCGATTCTCTACTCCACAATGATTGGACTAGAAAAAGTTAAAGCGTAACTCAACTAGCTAGTTGAAGTATTTTGAAAGAAAAAATCGAATAAACAGTCATATTGTATTTTTCTTTTTCTTTTTCTTTTACGAAACATATTGTTAATGATTTGTGGTTGTTTTTGGCGACAGAGTGATTATGTATGTGAACTCAGTGGCAGCTGGGTACAATCTTCTTCAACTCTGCAAGTGTTGGATCTCAGCTCAGCCAAAATTAGGAGCCTCAAAATTAGGGGCTCACTATGATATTTACATATTTTGGATTTCTTTCTTCCTTGATCAGGTATGTCTCTTCAATTAATTTAGATGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTNAATTACGTGAATGAGTTTTCCTAACTTTTATTTGGTTCATGAGTTTATTGATTTGGAAAAATTTATGAGAAAAAATCCATTACCTTCCATTTCTAAAATGTTGGTTAATTTGTATTTTTAATAAAAAAAAAGTTTAAAATATAGTTGGTTTTTTAAGTTCTTAATCATTGATTAACTTAATAATAATAATAATAATTTGTTTTCGGTTTTAACTTTTGATGATATTGGTTAGCTATGATGATCAGTCATATTGATTGAGATGACTATGGCCAGTTTATTTTATTATCAAACTTTAGAAGAAGTCAGAAATTAAAAATTGAAGCAAAATGTTTTAATATCTCTAGTTTCCCTCACCAAACAAACTTGTGGCCATAATTGCCACACATTTCGGAAAGTTCTAGGTTGGGTTTAGAGATTCTTTTTTCTTTTAACCTAATCCAATACTTCTTCATATAGTTATAAATTTTTCCAATTCAATTAGGATTGATTTTTTCAAATCATTGCTTCATATCATAAATTTAATATATATTTTAAACGAACATCACAATTTTCATCATTTTATTTAGGGCTCGTTTGGTAACTTTCCTGTTTTTTGTTTCTGTTTCTTTATTTTTAATGAAAAAAAACGTGTTGCATTGTTTTAACCTCCAAAAATTCAAATATGATAAAACAATGTTTTTATTTATATTTTGCAATAAATTGGAAATGGGAACCGGAAGAGAGAAACTTGTTTTGATTGTTCCCAAAATTTCTATACAATTGTGAGAATGTTCCAAAAAAGGAGAAACAAGAAACAAAGTTAGTTGTAAAATACCTAGATTTCTTAAGAAAATTGAAAACGAGAAACAAGAAATCGGAACGTTACCAAACAGGCCCTTATAGAATAAGCGTGACTTATTTTTCTTTTTTTTTTTATTTTACGTTATATTTGAGTTTAATTTTAATTTGAGTTTTTTTTTATTTTAAATTTTATGTTATATTTAAAAATAGATATTTATTTTAAGTTATTGATGGCTTCTTTTCCAAGAGAAAAATGAAAAACAAAAAATAAAAGTAATGTAGAGTTCATTGGATGACCTTTTTGTTTTTAAAAAACCAAAGCCAACATAAACTTAATTTAATGGTAATTGACATCTGTCTCTAATAAAAAATTATGAATTCGAATCTCCACGTCATCCTTTGGAAGAATAAAAAACCAGTATAAATTAGGGTGATAATCAACCAGACGCAGGTGAGTATAACTATCCCAAGTTAAGATATAAGTAATCTTTCACATCCTCAATCTATCCCCTTGCTTGTAATAGTCATCAACGGGTCCATAAACGCTACCAAACAAGTGCAGAAAGGTTTTAATGGTGTTCCACCTTACAAGTTGGGAGAGGTTTAAAGGTTGGGTTGAACTGGATTTTGACACAGGCAAGTGCATATGTGATATTTGCGGCGAACACGGCGGGGGTGGAGGCGGCTCTTCTGGCGATCACCGGAGCCTACAACCTTCAATGGATGAAGCTGTGCAACAGATTCACCAGATTTTGCTTCCAAGCTGGTGGAGCTTTCCTTTGTGGCTATGCAGCTTCTCTTACAATGGCTGCCATTTCCTTCATTTCTGCTTTCAATTTGTTCACCCATTACTCTCCAAGCCACTTCCTGCGACCAAAATCCAAGTGA ATGGGGTTTTTTGGGGATCTAAGAACTGAAGGGATTCTCAGATTCTGTGCGATTATTGGCCTTATTCTAACAGTTTGTTTGCTGGGTTTTGATAAACAAACTACTCAGATCTTTCATGTCGACAAAAAGGCCACTTTCAGAAGTTTGCGTTCTCTCATAGTGATTATGTATGTGAACTCAGTGGCAGCTGGGTACAATCTTCTTCAACTCTGCAAGTGTTGGATCTCAGCTCAGCCAAAATTAGGAGCCTCAAAATTAGGGGCTCACTATGATATTTACATATTTTGGATTTCTTTCTTCCTTGATCAGGCAAGTGCATATGTGATATTTGCGGCGAACACGGCGGGGGTGGAGGCGGCTCTTCTGGCGATCACCGGAGCCTACAACCTTCAATGGATGAAGCTGTGCAACAGATTCACCAGATTTTGCTTCCAAGCTGGTGGAGCTTTCCTTTGTGGCTATGCAGCTTCTCTTACAATGGCTGCCATTTCCTTCATTTCTGCTTTCAATTTGTTCACCCATTACTCTCCAAGCCACTTCCTGCGACCAAAATCCAAGTGA ATGGGGTTTTTTGGGGATCTAAGAACTGAAGGGATTCTCAGATTCTGTGCGATTATTGGCCTTATTCTAACAGTTTGTTTGCTGGGTTTTGATAAACAAACTACTCAGATCTTTCATGTCGACAAAAAGGCCACTTTCAGAAGTTTGCGTTCTCTCATAGTGATTATGTATGTGAACTCAGTGGCAGCTGGGTACAATCTTCTTCAACTCTGCAAGTGTTGGATCTCAGCTCAGCCAAAATTAGGAGCCTCAAAATTAGGGGCTCACTATGATATTTACATATTTTGGATTTCTTTCTTCCTTGATCAGGCAAGTGCATATGTGATATTTGCGGCGAACACGGCGGGGGTGGAGGCGGCTCTTCTGGCGATCACCGGAGCCTACAACCTTCAATGGATGAAGCTGTGCAACAGATTCACCAGATTTTGCTTCCAAGCTGGTGGAGCTTTCCTTTGTGGCTATGCAGCTTCTCTTACAATGGCTGCCATTTCCTTCATTTCTGCTTTCAATTTGTTCACCCATTACTCTCCAAGCCACTTCCTGCGACCAAAATCCAAGTGA MGFFGDLRTEGILRFCAIIGLILTVCLLGFDKQTTQIFHVDKKATFRSLRSLIVIMYVNSVAAGYNLLQLCKCWISAQPKLGASKLGAHYDIYIFWISFFLDQASAYVIFAANTAGVEAALLAITGAYNLQWMKLCNRFTRFCFQAGGAFLCGYAASLTMAAISFISAFNLFTHYSPSHFLRPKSK Homology
BLAST of MS025316 vs. NCBI nr
Match: XP_022153293.1 (CASP-like protein 2C1 [Momordica charantia]) HSP 1 Score: 369.4 bits (947), Expect = 1.8e-98 Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0
BLAST of MS025316 vs. NCBI nr
Match: XP_038889630.1 (CASP-like protein 2C1 [Benincasa hispida]) HSP 1 Score: 288.5 bits (737), Expect = 4.1e-74 Identity = 135/182 (74.18%), Postives = 162/182 (89.01%), Query Frame = 0
BLAST of MS025316 vs. NCBI nr
Match: XP_004149074.1 (CASP-like protein 2C1 [Cucumis sativus] >KGN61092.1 hypothetical protein Csa_021217 [Cucumis sativus]) HSP 1 Score: 286.2 bits (731), Expect = 2.0e-73 Identity = 135/182 (74.18%), Postives = 162/182 (89.01%), Query Frame = 0
BLAST of MS025316 vs. NCBI nr
Match: XP_023537147.1 (CASP-like protein 2C1 [Cucurbita pepo subsp. pepo] >KAG6586191.1 CASP-like protein 2C1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021022.1 CASP-like protein 2C1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 265.0 bits (676), Expect = 4.9e-67 Identity = 133/185 (71.89%), Postives = 154/185 (83.24%), Query Frame = 0
BLAST of MS025316 vs. NCBI nr
Match: XP_022938059.1 (CASP-like protein 2C1 [Cucurbita moschata]) HSP 1 Score: 263.1 bits (671), Expect = 1.8e-66 Identity = 132/185 (71.35%), Postives = 153/185 (82.70%), Query Frame = 0
BLAST of MS025316 vs. ExPASy Swiss-Prot
Match: B9IM09 (CASP-like protein 2C1 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_578614 PE=3 SV=2) HSP 1 Score: 179.9 bits (455), Expect = 2.7e-44 Identity = 94/177 (53.11%), Postives = 120/177 (67.80%), Query Frame = 0
BLAST of MS025316 vs. ExPASy Swiss-Prot
Match: A7Q6G6 (CASP-like protein 2C1 OS=Vitis vinifera OX=29760 GN=VIT_11s0052g01140 PE=2 SV=1) HSP 1 Score: 176.8 bits (447), Expect = 2.3e-43 Identity = 97/179 (54.19%), Postives = 126/179 (70.39%), Query Frame = 0
BLAST of MS025316 vs. ExPASy Swiss-Prot
Match: Q5K4H9 (CASP-like protein XL3 OS=Gossypium hirsutum OX=3635 GN=XL3 PE=2 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 1.3e-41 Identity = 85/177 (48.02%), Postives = 119/177 (67.23%), Query Frame = 0
BLAST of MS025316 vs. ExPASy Swiss-Prot
Match: C6SZ04 (CASP-like protein 2C1 OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 3.4e-39 Identity = 91/182 (50.00%), Postives = 120/182 (65.93%), Query Frame = 0
BLAST of MS025316 vs. ExPASy Swiss-Prot
Match: Q8L8U9 (CASP-like protein 2C1 OS=Arabidopsis thaliana OX=3702 GN=At4g25830 PE=2 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 4.6e-36 Identity = 80/177 (45.20%), Postives = 106/177 (59.89%), Query Frame = 0
BLAST of MS025316 vs. ExPASy TrEMBL
Match: A0A6J1DH36 (CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111020824 PE=3 SV=1) HSP 1 Score: 369.4 bits (947), Expect = 8.9e-99 Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0
BLAST of MS025316 vs. ExPASy TrEMBL
Match: A0A0A0LK62 (CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G048830 PE=3 SV=1) HSP 1 Score: 286.2 bits (731), Expect = 9.9e-74 Identity = 135/182 (74.18%), Postives = 162/182 (89.01%), Query Frame = 0
BLAST of MS025316 vs. ExPASy TrEMBL
Match: A0A6J1FCZ2 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111444261 PE=3 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 9.0e-67 Identity = 132/185 (71.35%), Postives = 153/185 (82.70%), Query Frame = 0
BLAST of MS025316 vs. ExPASy TrEMBL
Match: A0A6J1HQ91 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465689 PE=3 SV=1) HSP 1 Score: 259.6 bits (662), Expect = 9.9e-66 Identity = 130/185 (70.27%), Postives = 152/185 (82.16%), Query Frame = 0
BLAST of MS025316 vs. ExPASy TrEMBL
Match: A0A6J1ET65 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111436264 PE=3 SV=1) HSP 1 Score: 248.1 bits (632), Expect = 3.0e-62 Identity = 123/181 (67.96%), Postives = 146/181 (80.66%), Query Frame = 0
BLAST of MS025316 vs. TAIR 10
Match: AT4G25830.1 (Uncharacterised protein family (UPF0497) ) HSP 1 Score: 152.5 bits (384), Expect = 3.3e-37 Identity = 80/177 (45.20%), Postives = 106/177 (59.89%), Query Frame = 0
BLAST of MS025316 vs. TAIR 10
Match: AT2G35760.1 (Uncharacterised protein family (UPF0497) ) HSP 1 Score: 103.2 bits (256), Expect = 2.3e-22 Identity = 64/178 (35.96%), Postives = 93/178 (52.25%), Query Frame = 0
BLAST of MS025316 vs. TAIR 10
Match: AT4G16442.1 (Uncharacterised protein family (UPF0497) ) HSP 1 Score: 83.2 bits (204), Expect = 2.4e-16 Identity = 53/167 (31.74%), Postives = 86/167 (51.50%), Query Frame = 0
BLAST of MS025316 vs. TAIR 10
Match: AT4G15610.1 (Uncharacterised protein family (UPF0497) ) HSP 1 Score: 50.1 bits (118), Expect = 2.3e-06 Identity = 41/169 (24.26%), Postives = 76/169 (44.97%), Query Frame = 0
BLAST of MS025316 vs. TAIR 10
Match: AT4G20390.1 (Uncharacterised protein family (UPF0497) ) HSP 1 Score: 45.1 bits (105), Expect = 7.4e-05 Identity = 43/168 (25.60%), Postives = 73/168 (43.45%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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