Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCATGATACCGACTCCTGGTTCTAGTCAGTATCACACACCATCTTTGCCGCCGCAGTATGGCTATGGAGGGGGCCATGGACGTGGACGTGGAGAGCATGGACAATACTTCAACCCTACGGAAGATCGAGACCCTACAGAGAGTCAAGAGACACCAGCGGCACCACTAGTTCGTCGTCAGCCACATCGTAACCGGCGACGTCCCCATTGTGGAACGGATTAG mRNA sequence
ATGGTCATGATACCGACTCCTGGTTCTAGTCAGTATCACACACCATCTTTGCCGCCGCAGTATGGCTATGGAGGGGGCCATGGACGTGGACGTGGAGAGCATGGACAATACTTCAACCCTACGGAAGATCGAGACCCTACAGAGAGTCAAGAGACACCAGCGGCACCACTAGTTCGTCGTCAGCCACATCGTAACCGGCGACGTCCCCATTGTGGAACGGATTAG Coding sequence (CDS)
ATGGTCATGATACCGACTCCTGGTTCTAGTCAGTATCACACACCATCTTTGCCGCCGCAGTATGGCTATGGAGGGGGCCATGGACGTGGACGTGGAGAGCATGGACAATACTTCAACCCTACGGAAGATCGAGACCCTACAGAGAGTCAAGAGACACCAGCGGCACCACTAGTTCGTCGTCAGCCACATCGTAACCGGCGACGTCCCCATTGTGGAACGGATTAG Protein sequence
MVMIPTPGSSQYHTPSLPPQYGYGGGHGRGRGEHGQYFNPTEDRDPTESQETPAAPLVRRQPHRNRRRPHCGTD
Homology
BLAST of MS025295 vs. NCBI nr
Match:
XP_022152034.1 (disease resistance protein RGA2-like [Momordica charantia])
HSP 1 Score: 55.1 bits (131), Expect = 3.0e-04
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 0
Query: 1 MVMIPTPGSSQYHTPSLPPQYGYGGGHGRGRGEHGQYFNPTEDRDPTESQETP 54 MVMIPTP SS HT P QYGY G G GRGE+GQY NP ED+ +E+ P Sbjct: 923 MVMIPTPSSSHVHT---PVQYGY-DGDGCGRGEYGQYLNPIEDQQTSETLRAP 971
BLAST of MS025295 vs. ExPASy TrEMBL
Match:
A0A6J1DEU3 (disease resistance protein RGA2-like OS=Momordica charantia OX=3673 GN=LOC111019843 PE=4 SV=1)
HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 0
Query: 1 MVMIPTPGSSQYHTPSLPPQYGYGGGHGRGRGEHGQYFNPTEDRDPTESQETP 54 MVMIPTP SS HT P QYGY G G GRGE+GQY NP ED+ +E+ P Sbjct: 923 MVMIPTPSSSHVHT---PVQYGY-DGDGCGRGEYGQYLNPIEDQQTSETLRAP 971
The following BLAST results are available for this feature:
Match Name E-value Identity Description
XP_022152034.1 3.0e-04 58.49 disease resistance protein RGA2-like [Momordica charantia] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A6J1DEU3 1.5e-04 58.49 disease resistance protein RGA2-like OS=Momordica charantia OX=3673 GN=LOC111019... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
A T G G T C A T G A T A C C G A C T C C T G G T T C T A G T C A G T A T C A C A C A C C A T C T T T G C C G C C G C A G T A T G G C T A T G G A G G G G G C C A T G G A C G T G G A C G T G G A G A G C A T G G A C A A T A C T T C A A C C C T A C G G A A G A T C G A G A C C C T A C A G A G A G T C A A G A G A C A C C A G C G G C A C C A C T A G T T C G T C G T C A G C C A C A T C G T A A C C G G C G A C G T C C C C A T T G T G G A A C G G A T T A G 20 40 60 80 100 120 140 160 180 200 220 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..74
Relationships
The following mRNA feature(s) are a part of this gene:
Feature Name Unique Name Type
MS025295.1 MS025295.1 mRNA