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MS024980 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGTCATCGGCAACACATTCCGGCGCCGGCGCCGGTTCCTCAAGCCAAGGCGAAATCGCTCTGTTCTCGAATCTGACTCGCGACGATCCCTCCGAAATCCCCGCCGGAGTTGGAGGGTTGGCTCCGCCGCGACATCGCGTTCCGGTGTTCGAATTGCAACCTTGGGAGCCGGACGACGCGTCGATCCCGGCGCGTTTCGACGGCCGGATTCTGGAATCCTGTTCCTACTGCAAGAACGAAATCGGCCGAAAGGAGAACGTGTTTATGTACGGGTAAGTGAGAGTGAGGGTATCGTTTTGATGTTTATTATAATCTGAAAAAGGTTTTGATTTGGAATAATCGGATGTTTTTGCAGTTGTATGCAAGCCTTCTGCTCTACACTGTGCCGAGCCCAACAGATTCTGCTCGACGGTTTCATGAATTTGGAGGATTTGGATGATTCGTTTTTCGAGGATGCTCAGACCAAGAAAAAAGGACCTTGA ATGTCGTCATCGGCAACACATTCCGGCGCCGGCGCCGGTTCCTCAAGCCAAGGCGAAATCGCTCTGTTCTCGAATCTGACTCGCGACGATCCCTCCGAAATCCCCGCCGGAGTTGGAGGGTTGGCTCCGCCGCGACATCGCGTTCCGGTGTTCGAATTGCAACCTTGGGAGCCGGACGACGCGTCGATCCCGGCGCGTTTCGACGGCCGGATTCTGGAATCCTGTTCCTACTGCAAGAACGAAATCGGCCGAAAGGAGAACGTGTTTATGTACGGTTGTATGCAAGCCTTCTGCTCTACACTGTGCCGAGCCCAACAGATTCTGCTCGACGGTTTCATGAATTTGGAGGATTTGGATGATTCGTTTTTCGAGGATGCTCAGACCAAGAAAAAAGGACCTTGA ATGTCGTCATCGGCAACACATTCCGGCGCCGGCGCCGGTTCCTCAAGCCAAGGCGAAATCGCTCTGTTCTCGAATCTGACTCGCGACGATCCCTCCGAAATCCCCGCCGGAGTTGGAGGGTTGGCTCCGCCGCGACATCGCGTTCCGGTGTTCGAATTGCAACCTTGGGAGCCGGACGACGCGTCGATCCCGGCGCGTTTCGACGGCCGGATTCTGGAATCCTGTTCCTACTGCAAGAACGAAATCGGCCGAAAGGAGAACGTGTTTATGTACGGTTGTATGCAAGCCTTCTGCTCTACACTGTGCCGAGCCCAACAGATTCTGCTCGACGGTTTCATGAATTTGGAGGATTTGGATGATTCGTTTTTCGAGGATGCTCAGACCAAGAAAAAAGGACCTTGA MSSSATHSGAGAGSSSQGEIALFSNLTRDDPSEIPAGVGGLAPPRHRVPVFELQPWEPDDASIPARFDGRILESCSYCKNEIGRKENVFMYGCMQAFCSTLCRAQQILLDGFMNLEDLDDSFFEDAQTKKKGP Homology
BLAST of MS024980 vs. NCBI nr
Match: XP_042516912.1 (uncharacterized protein LOC122091140 [Macadamia integrifolia]) HSP 1 Score: 66.2 bits (160), Expect = 2.4e-07 Identity = 49/120 (40.83%), Postives = 62/120 (51.67%), Query Frame = 0
BLAST of MS024980 vs. NCBI nr
Match: XP_021802168.1 (protein MARD1-like, partial [Prunus avium]) HSP 1 Score: 62.4 bits (150), Expect = 3.4e-06 Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = 0
BLAST of MS024980 vs. NCBI nr
Match: XP_020423177.1 (protein MARD1-like [Prunus persica]) HSP 1 Score: 62.4 bits (150), Expect = 3.4e-06 Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 0
BLAST of MS024980 vs. NCBI nr
Match: VVA20948.1 (PREDICTED: senescence-associated (DUF581) [Prunus dulcis]) HSP 1 Score: 60.8 bits (146), Expect = 1.0e-05 Identity = 39/119 (32.77%), Postives = 54/119 (45.38%), Query Frame = 0
BLAST of MS024980 vs. NCBI nr
Match: XP_020534232.1 (FCS-Like Zinc finger 2 [Jatropha curcas] >KDP40208.1 hypothetical protein JCGZ_02206 [Jatropha curcas]) HSP 1 Score: 60.5 bits (145), Expect = 1.3e-05 Identity = 40/121 (33.06%), Postives = 60/121 (49.59%), Query Frame = 0
BLAST of MS024980 vs. ExPASy Swiss-Prot
Match: Q4PSK3 (FCS-Like Zinc finger 16 OS=Arabidopsis thaliana OX=3702 GN=FLZ16 PE=1 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 7.9e-06 Identity = 25/58 (43.10%), Postives = 32/58 (55.17%), Query Frame = 0
BLAST of MS024980 vs. ExPASy Swiss-Prot
Match: Q9LYE4 (FCS-Like Zinc finger 10 OS=Arabidopsis thaliana OX=3702 GN=FLZ10 PE=1 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 5.7e-04 Identity = 28/89 (31.46%), Postives = 46/89 (51.69%), Query Frame = 0
BLAST of MS024980 vs. ExPASy TrEMBL
Match: A0A6P5RJW1 (protein MARD1-like OS=Prunus avium OX=42229 GN=LOC110746270 PE=3 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 1.7e-06 Identity = 31/80 (38.75%), Postives = 46/80 (57.50%), Query Frame = 0
BLAST of MS024980 vs. ExPASy TrEMBL
Match: A0A5E4F596 (PREDICTED: senescence-associated (DUF581) OS=Prunus dulcis OX=3755 GN=ALMOND_2B012138 PE=3 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 4.8e-06 Identity = 39/119 (32.77%), Postives = 54/119 (45.38%), Query Frame = 0
BLAST of MS024980 vs. ExPASy TrEMBL
Match: A0A067KZ57 (FLZ-type domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_02206 PE=3 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 6.3e-06 Identity = 40/121 (33.06%), Postives = 60/121 (49.59%), Query Frame = 0
BLAST of MS024980 vs. ExPASy TrEMBL
Match: A0A5C7ISB3 (FLZ-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000674 PE=3 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 1.8e-05 Identity = 41/135 (30.37%), Postives = 65/135 (48.15%), Query Frame = 0
BLAST of MS024980 vs. ExPASy TrEMBL
Match: A0A5E4ESQ3 (PREDICTED: MARD1 OS=Prunus dulcis OX=3755 GN=ALMOND_2B000487 PE=3 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 2.4e-05 Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 0
BLAST of MS024980 vs. TAIR 10
Match: AT3G63230.1 (Protein of unknown function (DUF581) ) HSP 1 Score: 51.6 bits (122), Expect = 5.6e-07 Identity = 25/58 (43.10%), Postives = 32/58 (55.17%), Query Frame = 0
BLAST of MS024980 vs. TAIR 10
Match: AT3G63230.2 (Protein of unknown function (DUF581) ) HSP 1 Score: 51.6 bits (122), Expect = 5.6e-07 Identity = 25/58 (43.10%), Postives = 32/58 (55.17%), Query Frame = 0
BLAST of MS024980 vs. TAIR 10
Match: AT5G11460.1 (Protein of unknown function (DUF581) ) HSP 1 Score: 45.4 bits (106), Expect = 4.0e-05 Identity = 28/89 (31.46%), Postives = 46/89 (51.69%), Query Frame = 0
BLAST of MS024980 vs. TAIR 10
Match: AT3G63210.1 (Protein of unknown function (DUF581) ) HSP 1 Score: 40.8 bits (94), Expect = 9.9e-04 Identity = 15/39 (38.46%), Postives = 26/39 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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