MS024628 (gene) Bitter gourd (TR) v1

Overview
NameMS024628
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAuxin-responsive protein
Locationscaffold127: 536389 .. 536643 (-)
RNA-Seq ExpressionMS024628
SyntenyMS024628
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTCGGAAACCGCCCCACAGTCACCGGAATCTGATTTGACCCACGTCAATTTCGATGAAACAGAGCTCACCTTGGGCCTTCCGGGCGCCGAGTTCCGGCCAGCGGAGGGGAACAAAGTATATCACAGACCCAACGCAGCCAAACGTGGCTTCCATGACACCATTGATTCCAGCGTCGGGAGCTCGACAAGTGAGCAGTGTGGCAGTTGCGACAAGGCGAAACTCATCTCCTCCGCCGATGGTAAAGTTTAA

mRNA sequence

ATGCCGTCGGAAACCGCCCCACAGTCACCGGAATCTGATTTGACCCACGTCAATTTCGATGAAACAGAGCTCACCTTGGGCCTTCCGGGCGCCGAGTTCCGGCCAGCGGAGGGGAACAAAGTATATCACAGACCCAACGCAGCCAAACGTGGCTTCCATGACACCATTGATTCCAGCGTCGGGAGCTCGACAAGTGAGCAGTGTGGCAGTTGCGACAAGGCGAAACTCATCTCCTCCGCCGATGGTAAAGTTTAA

Coding sequence (CDS)

ATGCCGTCGGAAACCGCCCCACAGTCACCGGAATCTGATTTGACCCACGTCAATTTCGATGAAACAGAGCTCACCTTGGGCCTTCCGGGCGCCGAGTTCCGGCCAGCGGAGGGGAACAAAGTATATCACAGACCCAACGCAGCCAAACGTGGCTTCCATGACACCATTGATTCCAGCGTCGGGAGCTCGACAAGTGAGCAGTGTGGCAGTTGCGACAAGGCGAAACTCATCTCCTCCGCCGATGGTAAAGTTTAA

Protein sequence

MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQCGSCDKAKLISSADGKV
Homology
BLAST of MS024628 vs. NCBI nr
Match: XP_022145003.1 (auxin-responsive protein IAA16-like isoform X1 [Momordica charantia])

HSP 1 Score: 165.6 bits (418), Expect = 1.8e-37
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0

Query: 1  MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSV 60
          MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSV
Sbjct: 1  MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSV 60

Query: 61 GSSTSEQCGSCDKAKLISSADGK 84
          GSS SEQCGSCDKAKLISSADG+
Sbjct: 61 GSSISEQCGSCDKAKLISSADGQ 83

BLAST of MS024628 vs. NCBI nr
Match: XP_022145004.1 (auxin-responsive protein IAA4-like isoform X2 [Momordica charantia])

HSP 1 Score: 165.6 bits (418), Expect = 1.8e-37
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0

Query: 1  MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSV 60
          MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSV
Sbjct: 1  MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSV 60

Query: 61 GSSTSEQCGSCDKAKLISSADGK 84
          GSS SEQCGSCDKAKLISSADG+
Sbjct: 61 GSSISEQCGSCDKAKLISSADGQ 83

BLAST of MS024628 vs. NCBI nr
Match: KAG6587938.1 (Auxin-induced protein AUX22, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.5 bits (249), Expect = 7.2e-18
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 3  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGS 62
          +ET P+SPESDLTH+NFDETELTLGLPGAEFRP + NKVYH+PNA +R FH+  D+  G+
Sbjct: 4  AETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKVYHKPNANRRAFHEADDAGAGN 63

Query: 63 STSEQ 68
          ST ++
Sbjct: 64 STRKK 68

BLAST of MS024628 vs. NCBI nr
Match: XP_022932835.1 (auxin-responsive protein IAA1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 100.5 bits (249), Expect = 7.2e-18
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 3  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGS 62
          +ET P+SPESDLTH+NFDETELTLGLPGAEFRP + NKVYH+PNA +R FH+  D+  G+
Sbjct: 4  AETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKVYHKPNANRRAFHEADDAGAGN 63

Query: 63 STSEQ 68
          ST ++
Sbjct: 64 STRKK 68

BLAST of MS024628 vs. NCBI nr
Match: XP_022932838.1 (auxin-responsive protein IAA1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 100.5 bits (249), Expect = 7.2e-18
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 3  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGS 62
          +ET P+SPESDLTH+NFDETELTLGLPGAEFRP + NKVYH+PNA +R FH+  D+  G+
Sbjct: 4  AETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKVYHKPNANRRAFHEADDAGAGN 63

Query: 63 STSEQ 68
          ST ++
Sbjct: 64 STRKK 68

BLAST of MS024628 vs. ExPASy TrEMBL
Match: A0A6J1CUS1 (Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111014532 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.8e-38
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0

Query: 1  MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSV 60
          MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSV
Sbjct: 1  MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSV 60

Query: 61 GSSTSEQCGSCDKAKLISSADGK 84
          GSS SEQCGSCDKAKLISSADG+
Sbjct: 61 GSSISEQCGSCDKAKLISSADGQ 83

BLAST of MS024628 vs. ExPASy TrEMBL
Match: A0A6J1CTX7 (Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111014532 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.8e-38
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 0

Query: 1  MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSV 60
          MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSV
Sbjct: 1  MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSV 60

Query: 61 GSSTSEQCGSCDKAKLISSADGK 84
          GSS SEQCGSCDKAKLISSADG+
Sbjct: 61 GSSISEQCGSCDKAKLISSADGQ 83

BLAST of MS024628 vs. ExPASy TrEMBL
Match: A0A6J1KGU6 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111495646 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.5e-18
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 3  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGS 62
          +ET  +SPESDLTH+NFDETELTLGLPGAEFRP + NKVYH+PNA +R FHD +D+  G+
Sbjct: 4  AETVLESPESDLTHINFDETELTLGLPGAEFRPTQPNKVYHKPNANRRAFHDAVDAGAGN 63

Query: 63 STSEQ 68
          ST ++
Sbjct: 64 STRKK 68

BLAST of MS024628 vs. ExPASy TrEMBL
Match: A0A6J1F2V8 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111439311 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.5e-18
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 3  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGS 62
          +ET P+SPESDLTH+NFDETELTLGLPGAEFRP + NKVYH+PNA +R FH+  D+  G+
Sbjct: 4  AETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKVYHKPNANRRAFHEADDAGAGN 63

Query: 63 STSEQ 68
          ST ++
Sbjct: 64 STRKK 68

BLAST of MS024628 vs. ExPASy TrEMBL
Match: A0A6J1F375 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111439311 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.5e-18
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 3  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGS 62
          +ET P+SPESDLTH+NFDETELTLGLPGAEFRP + NKVYH+PNA +R FH+  D+  G+
Sbjct: 4  AETVPESPESDLTHINFDETELTLGLPGAEFRPTQPNKVYHKPNANRRAFHEADDAGAGN 63

Query: 63 STSEQ 68
          ST ++
Sbjct: 64 STRKK 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022145003.11.8e-3797.59auxin-responsive protein IAA16-like isoform X1 [Momordica charantia][more]
XP_022145004.11.8e-3797.59auxin-responsive protein IAA4-like isoform X2 [Momordica charantia][more]
KAG6587938.17.2e-1867.69Auxin-induced protein AUX22, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022932835.17.2e-1867.69auxin-responsive protein IAA1-like isoform X1 [Cucurbita moschata][more]
XP_022932838.17.2e-1867.69auxin-responsive protein IAA1-like isoform X2 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CUS18.8e-3897.59Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111014532 PE=3 SV=... [more]
A0A6J1CTX78.8e-3897.59Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111014532 PE=3 SV=... [more]
A0A6J1KGU63.5e-1867.69Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111495646 PE=3 SV=1[more]
A0A6J1F2V83.5e-1867.69Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111439311 PE=3 SV=1[more]
A0A6J1F3753.5e-1867.69Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111439311 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS024628.1MS024628.1mRNA