Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTGCATGCTTTCGCGGGTAACCCGGCTCGAGAACCACCACTCGGACCCGGTTGTGTACCGGGTAATCCGAGGACCCGGTAACTTTCTGGTACTGGAACACGAGATCCTTCCGGGCCGACATGTCGACGTTAGCCACAGCGACTTCAAAATCCGATACAACGTTAATCGTCGCGTTAAATTACGTGTGTATGTACAAGGTAGAGAAGAGGCTGAGGCTGCGACATGTTTGTCTTTGTCCACCTCTCAAATTAGGGACAATGCCAGAATTCGATTTGGGTATGTGAATGGAAAATTCTCTGTAACTGAGATCAACGGGAAATTGTTGACTAGAATCAGGTTTTTATGTTCTAATTTTTTATTTTTATTTTTTGTATTTTCCCATATAAATAATTCATGCAAGGGAATTGGAATTGGAATTGAATTCCATGGGAATTTAATTTTATCTGTTTTGTTTTGGCAGATGTGTTGTAAAGGTAAAGGACTTGAAGATGAAGATTTGGAAGAAACTTAATGGGCAGGAGATCGTAAATTGCTGA
mRNA sequence
ATGGGGTGCATGCTTTCGCGGGTAACCCGGCTCGAGAACCACCACTCGGACCCGGTTGTGTACCGGGTAATCCGAGGACCCGGTAACTTTCTGGTACTGGAACACGAGATCCTTCCGGGCCGACATGTCGACGTTAGCCACAGCGACTTCAAAATCCGATACAACGTTAATCGTCGCGTTAAATTACGTGTGTATGTACAAGGTAGAGAAGAGGCTGAGGCTGCGACATGTTTGTCTTTGTCCACCTCTCAAATTAGGGACAATGCCAGAATTCGATTTGGGTATGTGAATGGAAAATTCTCTGTAACTGAGATCAACGGGAAATTGTTGACTAGAATCAGATGTGTTGTAAAGGTAAAGGACTTGAAGATGAAGATTTGGAAGAAACTTAATGGGCAGGAGATCGTAAATTGCTGA
Coding sequence (CDS)
ATGGGGTGCATGCTTTCGCGGGTAACCCGGCTCGAGAACCACCACTCGGACCCGGTTGTGTACCGGGTAATCCGAGGACCCGGTAACTTTCTGGTACTGGAACACGAGATCCTTCCGGGCCGACATGTCGACGTTAGCCACAGCGACTTCAAAATCCGATACAACGTTAATCGTCGCGTTAAATTACGTGTGTATGTACAAGGTAGAGAAGAGGCTGAGGCTGCGACATGTTTGTCTTTGTCCACCTCTCAAATTAGGGACAATGCCAGAATTCGATTTGGGTATGTGAATGGAAAATTCTCTGTAACTGAGATCAACGGGAAATTGTTGACTAGAATCAGATGTGTTGTAAAGGTAAAGGACTTGAAGATGAAGATTTGGAAGAAACTTAATGGGCAGGAGATCGTAAATTGCTGA
Protein sequence
MGCMLSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRRVKLRVYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRIRCVVKVKDLKMKIWKKLNGQEIVNC
Homology
BLAST of MS024625 vs. NCBI nr
Match:
XP_030956942.1 (uncharacterized protein LOC115979117 [Quercus lobata] >XP_030961949.1 uncharacterized protein LOC115983418 [Quercus lobata])
HSP 1 Score: 78.6 bits (192), Expect = 4.8e-11
Identity = 48/133 (36.09%), Postives = 77/133 (57.89%), Query Frame = 0
Query: 1 MGCMLSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRRV 60
M + SR T ++N ++ +V +V R PGNF V E I G ++ + ++DF I +N +R V
Sbjct: 1 MASLWSRNTEVKNESNETMVVKVTRDPGNFKVKEFIIPAGDYIYMCYNDFGIEHNPDRPV 60
Query: 61 KLRVYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRIRCVVKVK 120
+RVYV ++ L + S+IRD+ +I GY NG + T I+ ++ RI ++K+K
Sbjct: 61 NVRVYVGDEQK------LYVRASRIRDSGKIVLGYENGMVTSTFIDIYMVARIGLIIKMK 120
Query: 121 DLKMKIWKKLNGQ 134
KI KKL G+
Sbjct: 121 GATKKI-KKLLGK 126
BLAST of MS024625 vs. NCBI nr
Match:
XP_015580975.1 (uncharacterized protein LOC8276201 [Ricinus communis] >XP_015580977.1 uncharacterized protein LOC8276201 [Ricinus communis])
HSP 1 Score: 73.9 bits (180), Expect = 1.2e-09
Identity = 45/142 (31.69%), Postives = 73/142 (51.41%), Query Frame = 0
Query: 1 MGCMLSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRRV 60
M +S + LEN H+D ++ V + G + +I PG D+ + D I N +R
Sbjct: 1 MANAISIKSELENRHTDTMILEVTKHLGTVPYVSIKIPPGEVKDLCYGDLHIEDNPDRPP 60
Query: 61 KLRVYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRIRCVVK-- 120
+ V+V+G E E S S IRD+A++ + NGK +V + G +L RI C+VK
Sbjct: 61 LVSVFVEGAAEVEKKYIFS---SFIRDHAKLVLNFENGKVTVLPVKGNVLARIGCIVKLR 120
Query: 121 --VKDLKMKIWKKLNGQEIVNC 139
+ ++ ++ KKLN V+C
Sbjct: 121 RTISEIGEQMGKKLNKSSQVSC 139
BLAST of MS024625 vs. NCBI nr
Match:
EEF33015.1 (conserved hypothetical protein [Ricinus communis])
HSP 1 Score: 72.4 bits (176), Expect = 3.4e-09
Identity = 43/132 (32.58%), Postives = 68/132 (51.52%), Query Frame = 0
Query: 1 MGC-MLSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRR 60
M C LS +T LEN + P+V R G F ++ + PG D+ + + I N +R
Sbjct: 1 MACGFLSIITELENGYDHPMVLEGTRHLGMFPMVRITVPPGEVKDICYGNLCIEENPDRP 60
Query: 61 VKLRVYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRIRCVVKV 120
+ + +++ G E E + LST IRDNA++ Y N + + G ++ RI C+V +
Sbjct: 61 ILVSIFLDGAAEEEKKKYI-LST-LIRDNAKLVLNYENSNVTCMPVEGNIMARIGCIVNL 120
Query: 121 KDLKMKIWKKLN 132
K IW+KLN
Sbjct: 121 KRFMTGIWEKLN 130
BLAST of MS024625 vs. NCBI nr
Match:
XP_035544280.1 (uncharacterized protein LOC109003737 [Juglans regia] >KAF5482104.1 hypothetical protein F2P56_002696 [Juglans regia])
HSP 1 Score: 65.1 bits (157), Expect = 5.5e-07
Identity = 44/136 (32.35%), Postives = 66/136 (48.53%), Query Frame = 0
Query: 6 SRVTRLENHHSDPVVYRVIRGPGNFL--VLEHEILPGRHVDVSHSDFKIRYNVNRRVKLR 65
SR T ++N + VI PGNFL EI G H + ++DF I NVNR V++
Sbjct: 7 SRNTMIKNKSDLTMRVDVIVHPGNFLSKASVPEIPAGEHRYICYADFGIETNVNRNVEVL 66
Query: 66 VYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRIRCVVKVKDLK 125
Y G +E + + TS+IRDN I Y+NGK + G ++ ++ +K
Sbjct: 67 AYCDGAKEKDKK---PIPTSEIRDNQGIELTYMNGKVDYHRVKGNMIEMNGVIILMKHAA 126
Query: 126 MKI----WKKLNGQEI 136
KI WK + +E+
Sbjct: 127 RKIRSILWKMEDHKEL 139
BLAST of MS024625 vs. NCBI nr
Match:
PON83623.1 (hypothetical protein TorRG33x02_205800 [Trema orientale])
HSP 1 Score: 63.9 bits (154), Expect = 1.2e-06
Identity = 36/110 (32.73%), Postives = 54/110 (49.09%), Query Frame = 0
Query: 4 MLSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRRVKLR 63
+++R TRLEN H+ P+V + + + I P RHV V +SD ++ YN +
Sbjct: 4 LITRATRLENTHNAPIVVQARKNGNIRKNFKFTIQPHRHVVVYYSDLRVEYNYS-----M 63
Query: 64 VYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRI 114
YV + + TS +RDN I FG+ NG + I GK L R+
Sbjct: 64 TYVDAFPVGQEDQGTDVDTSHLRDNEVIVFGFENGMVTANPIKGKCLARL 108
BLAST of MS024625 vs. ExPASy TrEMBL
Match:
B9STM9 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0825780 PE=4 SV=1)
HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 43/132 (32.58%), Postives = 68/132 (51.52%), Query Frame = 0
Query: 1 MGC-MLSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRR 60
M C LS +T LEN + P+V R G F ++ + PG D+ + + I N +R
Sbjct: 1 MACGFLSIITELENGYDHPMVLEGTRHLGMFPMVRITVPPGEVKDICYGNLCIEENPDRP 60
Query: 61 VKLRVYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRIRCVVKV 120
+ + +++ G E E + LST IRDNA++ Y N + + G ++ RI C+V +
Sbjct: 61 ILVSIFLDGAAEEEKKKYI-LST-LIRDNAKLVLNYENSNVTCMPVEGNIMARIGCIVNL 120
Query: 121 KDLKMKIWKKLN 132
K IW+KLN
Sbjct: 121 KRFMTGIWEKLN 130
BLAST of MS024625 vs. ExPASy TrEMBL
Match:
A0A2I4G196 (uncharacterized protein LOC109003737 OS=Juglans regia OX=51240 GN=LOC109003737 PE=4 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 44/136 (32.35%), Postives = 66/136 (48.53%), Query Frame = 0
Query: 6 SRVTRLENHHSDPVVYRVIRGPGNFL--VLEHEILPGRHVDVSHSDFKIRYNVNRRVKLR 65
SR T ++N + VI PGNFL EI G H + ++DF I NVNR V++
Sbjct: 7 SRNTMIKNKSDLTMRVDVIVHPGNFLSKASVPEIPAGEHRYICYADFGIETNVNRNVEVL 66
Query: 66 VYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRIRCVVKVKDLK 125
Y G +E + + TS+IRDN I Y+NGK + G ++ ++ +K
Sbjct: 67 AYCDGAKEKDKK---PIPTSEIRDNQGIELTYMNGKVDYHRVKGNMIEMNGVIILMKHAA 126
Query: 126 MKI----WKKLNGQEI 136
KI WK + +E+
Sbjct: 127 RKIRSILWKMEDHKEL 139
BLAST of MS024625 vs. ExPASy TrEMBL
Match:
A0A2P5EDL3 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_205800 PE=4 SV=1)
HSP 1 Score: 63.9 bits (154), Expect = 5.9e-07
Identity = 36/110 (32.73%), Postives = 54/110 (49.09%), Query Frame = 0
Query: 4 MLSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRRVKLR 63
+++R TRLEN H+ P+V + + + I P RHV V +SD ++ YN +
Sbjct: 4 LITRATRLENTHNAPIVVQARKNGNIRKNFKFTIQPHRHVVVYYSDLRVEYNYS-----M 63
Query: 64 VYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRI 114
YV + + TS +RDN I FG+ NG + I GK L R+
Sbjct: 64 TYVDAFPVGQEDQGTDVDTSHLRDNEVIVFGFENGMVTANPIKGKCLARL 108
BLAST of MS024625 vs. ExPASy TrEMBL
Match:
B9STN0 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0825890 PE=4 SV=1)
HSP 1 Score: 61.2 bits (147), Expect = 3.8e-06
Identity = 45/164 (27.44%), Postives = 73/164 (44.51%), Query Frame = 0
Query: 1 MGCMLSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRRV 60
M +S + LEN H+D ++ V + G + +I PG D+ + D I N +R
Sbjct: 1 MANAISIKSELENRHTDTMILEVTKHLGTVPYVSIKIPPGEVKDLCYGDLHIEDNPDRPP 60
Query: 61 KLRVYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRI------- 120
+ V+V+G E E S S IRD+A++ + NGK +V + G +L RI
Sbjct: 61 LVSVFVEGAAEVEKKYIFS---SFIRDHAKLVLNFENGKVTVLPVKGNVLARIGNLFFLY 120
Query: 121 ---------------RCVVK----VKDLKMKIWKKLNGQEIVNC 139
C+VK + ++ ++ KKLN V+C
Sbjct: 121 GGLWLPLPGANGGLGGCIVKLRRTISEIGEQMGKKLNKSSQVSC 161
BLAST of MS024625 vs. ExPASy TrEMBL
Match:
A0A2P5A3Z1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_358320 PE=4 SV=1)
HSP 1 Score: 60.1 bits (144), Expect = 8.5e-06
Identity = 40/109 (36.70%), Postives = 54/109 (49.54%), Query Frame = 0
Query: 5 LSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRRVKLRV 64
LS TRLEN H++P+V R + I PG V V +SD I YN ++ L
Sbjct: 3 LSMSTRLENRHTEPIVVRAKKNGFPIDEFNVTIQPGTSVHVYYSDLGIEYNYSQPHVL-A 62
Query: 65 YVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRI 114
+ +G+E L TS +R + I FG+ NG +V I GK L RI
Sbjct: 63 FPEGQENQGQTVVL---TSAVRSSEVIVFGFENGLVTVKPIKGKFLPRI 107
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_030956942.1 | 4.8e-11 | 36.09 | uncharacterized protein LOC115979117 [Quercus lobata] >XP_030961949.1 uncharacte... | [more] |
XP_015580975.1 | 1.2e-09 | 31.69 | uncharacterized protein LOC8276201 [Ricinus communis] >XP_015580977.1 uncharacte... | [more] |
EEF33015.1 | 3.4e-09 | 32.58 | conserved hypothetical protein [Ricinus communis] | [more] |
XP_035544280.1 | 5.5e-07 | 32.35 | uncharacterized protein LOC109003737 [Juglans regia] >KAF5482104.1 hypothetical ... | [more] |
PON83623.1 | 1.2e-06 | 32.73 | hypothetical protein TorRG33x02_205800 [Trema orientale] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
B9STM9 | 1.7e-09 | 32.58 | Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0825780 PE=4 SV=1 | [more] |
A0A2I4G196 | 2.7e-07 | 32.35 | uncharacterized protein LOC109003737 OS=Juglans regia OX=51240 GN=LOC109003737 P... | [more] |
A0A2P5EDL3 | 5.9e-07 | 32.73 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_205800 PE=4 SV... | [more] |
B9STN0 | 3.8e-06 | 27.44 | Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0825890 PE=4 SV=1 | [more] |
A0A2P5A3Z1 | 8.5e-06 | 36.70 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_358320 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |