MS024625 (gene) Bitter gourd (TR) v1

Overview
NameMS024625
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold127: 465824 .. 466364 (-)
RNA-Seq ExpressionMS024625
SyntenyMS024625
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTGCATGCTTTCGCGGGTAACCCGGCTCGAGAACCACCACTCGGACCCGGTTGTGTACCGGGTAATCCGAGGACCCGGTAACTTTCTGGTACTGGAACACGAGATCCTTCCGGGCCGACATGTCGACGTTAGCCACAGCGACTTCAAAATCCGATACAACGTTAATCGTCGCGTTAAATTACGTGTGTATGTACAAGGTAGAGAAGAGGCTGAGGCTGCGACATGTTTGTCTTTGTCCACCTCTCAAATTAGGGACAATGCCAGAATTCGATTTGGGTATGTGAATGGAAAATTCTCTGTAACTGAGATCAACGGGAAATTGTTGACTAGAATCAGGTTTTTATGTTCTAATTTTTTATTTTTATTTTTTGTATTTTCCCATATAAATAATTCATGCAAGGGAATTGGAATTGGAATTGAATTCCATGGGAATTTAATTTTATCTGTTTTGTTTTGGCAGATGTGTTGTAAAGGTAAAGGACTTGAAGATGAAGATTTGGAAGAAACTTAATGGGCAGGAGATCGTAAATTGCTGA

mRNA sequence

ATGGGGTGCATGCTTTCGCGGGTAACCCGGCTCGAGAACCACCACTCGGACCCGGTTGTGTACCGGGTAATCCGAGGACCCGGTAACTTTCTGGTACTGGAACACGAGATCCTTCCGGGCCGACATGTCGACGTTAGCCACAGCGACTTCAAAATCCGATACAACGTTAATCGTCGCGTTAAATTACGTGTGTATGTACAAGGTAGAGAAGAGGCTGAGGCTGCGACATGTTTGTCTTTGTCCACCTCTCAAATTAGGGACAATGCCAGAATTCGATTTGGGTATGTGAATGGAAAATTCTCTGTAACTGAGATCAACGGGAAATTGTTGACTAGAATCAGATGTGTTGTAAAGGTAAAGGACTTGAAGATGAAGATTTGGAAGAAACTTAATGGGCAGGAGATCGTAAATTGCTGA

Coding sequence (CDS)

ATGGGGTGCATGCTTTCGCGGGTAACCCGGCTCGAGAACCACCACTCGGACCCGGTTGTGTACCGGGTAATCCGAGGACCCGGTAACTTTCTGGTACTGGAACACGAGATCCTTCCGGGCCGACATGTCGACGTTAGCCACAGCGACTTCAAAATCCGATACAACGTTAATCGTCGCGTTAAATTACGTGTGTATGTACAAGGTAGAGAAGAGGCTGAGGCTGCGACATGTTTGTCTTTGTCCACCTCTCAAATTAGGGACAATGCCAGAATTCGATTTGGGTATGTGAATGGAAAATTCTCTGTAACTGAGATCAACGGGAAATTGTTGACTAGAATCAGATGTGTTGTAAAGGTAAAGGACTTGAAGATGAAGATTTGGAAGAAACTTAATGGGCAGGAGATCGTAAATTGCTGA

Protein sequence

MGCMLSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRRVKLRVYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRIRCVVKVKDLKMKIWKKLNGQEIVNC
Homology
BLAST of MS024625 vs. NCBI nr
Match: XP_030956942.1 (uncharacterized protein LOC115979117 [Quercus lobata] >XP_030961949.1 uncharacterized protein LOC115983418 [Quercus lobata])

HSP 1 Score: 78.6 bits (192), Expect = 4.8e-11
Identity = 48/133 (36.09%), Postives = 77/133 (57.89%), Query Frame = 0

Query: 1   MGCMLSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRRV 60
           M  + SR T ++N  ++ +V +V R PGNF V E  I  G ++ + ++DF I +N +R V
Sbjct: 1   MASLWSRNTEVKNESNETMVVKVTRDPGNFKVKEFIIPAGDYIYMCYNDFGIEHNPDRPV 60

Query: 61  KLRVYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRIRCVVKVK 120
            +RVYV   ++      L +  S+IRD+ +I  GY NG  + T I+  ++ RI  ++K+K
Sbjct: 61  NVRVYVGDEQK------LYVRASRIRDSGKIVLGYENGMVTSTFIDIYMVARIGLIIKMK 120

Query: 121 DLKMKIWKKLNGQ 134
               KI KKL G+
Sbjct: 121 GATKKI-KKLLGK 126

BLAST of MS024625 vs. NCBI nr
Match: XP_015580975.1 (uncharacterized protein LOC8276201 [Ricinus communis] >XP_015580977.1 uncharacterized protein LOC8276201 [Ricinus communis])

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-09
Identity = 45/142 (31.69%), Postives = 73/142 (51.41%), Query Frame = 0

Query: 1   MGCMLSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRRV 60
           M   +S  + LEN H+D ++  V +  G    +  +I PG   D+ + D  I  N +R  
Sbjct: 1   MANAISIKSELENRHTDTMILEVTKHLGTVPYVSIKIPPGEVKDLCYGDLHIEDNPDRPP 60

Query: 61  KLRVYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRIRCVVK-- 120
            + V+V+G  E E     S   S IRD+A++   + NGK +V  + G +L RI C+VK  
Sbjct: 61  LVSVFVEGAAEVEKKYIFS---SFIRDHAKLVLNFENGKVTVLPVKGNVLARIGCIVKLR 120

Query: 121 --VKDLKMKIWKKLNGQEIVNC 139
             + ++  ++ KKLN    V+C
Sbjct: 121 RTISEIGEQMGKKLNKSSQVSC 139

BLAST of MS024625 vs. NCBI nr
Match: EEF33015.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 72.4 bits (176), Expect = 3.4e-09
Identity = 43/132 (32.58%), Postives = 68/132 (51.52%), Query Frame = 0

Query: 1   MGC-MLSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRR 60
           M C  LS +T LEN +  P+V    R  G F ++   + PG   D+ + +  I  N +R 
Sbjct: 1   MACGFLSIITELENGYDHPMVLEGTRHLGMFPMVRITVPPGEVKDICYGNLCIEENPDRP 60

Query: 61  VKLRVYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRIRCVVKV 120
           + + +++ G  E E    + LST  IRDNA++   Y N   +   + G ++ RI C+V +
Sbjct: 61  ILVSIFLDGAAEEEKKKYI-LST-LIRDNAKLVLNYENSNVTCMPVEGNIMARIGCIVNL 120

Query: 121 KDLKMKIWKKLN 132
           K     IW+KLN
Sbjct: 121 KRFMTGIWEKLN 130

BLAST of MS024625 vs. NCBI nr
Match: XP_035544280.1 (uncharacterized protein LOC109003737 [Juglans regia] >KAF5482104.1 hypothetical protein F2P56_002696 [Juglans regia])

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-07
Identity = 44/136 (32.35%), Postives = 66/136 (48.53%), Query Frame = 0

Query: 6   SRVTRLENHHSDPVVYRVIRGPGNFL--VLEHEILPGRHVDVSHSDFKIRYNVNRRVKLR 65
           SR T ++N     +   VI  PGNFL      EI  G H  + ++DF I  NVNR V++ 
Sbjct: 7   SRNTMIKNKSDLTMRVDVIVHPGNFLSKASVPEIPAGEHRYICYADFGIETNVNRNVEVL 66

Query: 66  VYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRIRCVVKVKDLK 125
            Y  G +E +      + TS+IRDN  I   Y+NGK     + G ++     ++ +K   
Sbjct: 67  AYCDGAKEKDKK---PIPTSEIRDNQGIELTYMNGKVDYHRVKGNMIEMNGVIILMKHAA 126

Query: 126 MKI----WKKLNGQEI 136
            KI    WK  + +E+
Sbjct: 127 RKIRSILWKMEDHKEL 139

BLAST of MS024625 vs. NCBI nr
Match: PON83623.1 (hypothetical protein TorRG33x02_205800 [Trema orientale])

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-06
Identity = 36/110 (32.73%), Postives = 54/110 (49.09%), Query Frame = 0

Query: 4   MLSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRRVKLR 63
           +++R TRLEN H+ P+V +  +        +  I P RHV V +SD ++ YN +      
Sbjct: 4   LITRATRLENTHNAPIVVQARKNGNIRKNFKFTIQPHRHVVVYYSDLRVEYNYS-----M 63

Query: 64  VYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRI 114
            YV      +      + TS +RDN  I FG+ NG  +   I GK L R+
Sbjct: 64  TYVDAFPVGQEDQGTDVDTSHLRDNEVIVFGFENGMVTANPIKGKCLARL 108

BLAST of MS024625 vs. ExPASy TrEMBL
Match: B9STM9 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0825780 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 43/132 (32.58%), Postives = 68/132 (51.52%), Query Frame = 0

Query: 1   MGC-MLSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRR 60
           M C  LS +T LEN +  P+V    R  G F ++   + PG   D+ + +  I  N +R 
Sbjct: 1   MACGFLSIITELENGYDHPMVLEGTRHLGMFPMVRITVPPGEVKDICYGNLCIEENPDRP 60

Query: 61  VKLRVYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRIRCVVKV 120
           + + +++ G  E E    + LST  IRDNA++   Y N   +   + G ++ RI C+V +
Sbjct: 61  ILVSIFLDGAAEEEKKKYI-LST-LIRDNAKLVLNYENSNVTCMPVEGNIMARIGCIVNL 120

Query: 121 KDLKMKIWKKLN 132
           K     IW+KLN
Sbjct: 121 KRFMTGIWEKLN 130

BLAST of MS024625 vs. ExPASy TrEMBL
Match: A0A2I4G196 (uncharacterized protein LOC109003737 OS=Juglans regia OX=51240 GN=LOC109003737 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 44/136 (32.35%), Postives = 66/136 (48.53%), Query Frame = 0

Query: 6   SRVTRLENHHSDPVVYRVIRGPGNFL--VLEHEILPGRHVDVSHSDFKIRYNVNRRVKLR 65
           SR T ++N     +   VI  PGNFL      EI  G H  + ++DF I  NVNR V++ 
Sbjct: 7   SRNTMIKNKSDLTMRVDVIVHPGNFLSKASVPEIPAGEHRYICYADFGIETNVNRNVEVL 66

Query: 66  VYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRIRCVVKVKDLK 125
            Y  G +E +      + TS+IRDN  I   Y+NGK     + G ++     ++ +K   
Sbjct: 67  AYCDGAKEKDKK---PIPTSEIRDNQGIELTYMNGKVDYHRVKGNMIEMNGVIILMKHAA 126

Query: 126 MKI----WKKLNGQEI 136
            KI    WK  + +E+
Sbjct: 127 RKIRSILWKMEDHKEL 139

BLAST of MS024625 vs. ExPASy TrEMBL
Match: A0A2P5EDL3 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_205800 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.9e-07
Identity = 36/110 (32.73%), Postives = 54/110 (49.09%), Query Frame = 0

Query: 4   MLSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRRVKLR 63
           +++R TRLEN H+ P+V +  +        +  I P RHV V +SD ++ YN +      
Sbjct: 4   LITRATRLENTHNAPIVVQARKNGNIRKNFKFTIQPHRHVVVYYSDLRVEYNYS-----M 63

Query: 64  VYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRI 114
            YV      +      + TS +RDN  I FG+ NG  +   I GK L R+
Sbjct: 64  TYVDAFPVGQEDQGTDVDTSHLRDNEVIVFGFENGMVTANPIKGKCLARL 108

BLAST of MS024625 vs. ExPASy TrEMBL
Match: B9STN0 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0825890 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-06
Identity = 45/164 (27.44%), Postives = 73/164 (44.51%), Query Frame = 0

Query: 1   MGCMLSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRRV 60
           M   +S  + LEN H+D ++  V +  G    +  +I PG   D+ + D  I  N +R  
Sbjct: 1   MANAISIKSELENRHTDTMILEVTKHLGTVPYVSIKIPPGEVKDLCYGDLHIEDNPDRPP 60

Query: 61  KLRVYVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRI------- 120
            + V+V+G  E E     S   S IRD+A++   + NGK +V  + G +L RI       
Sbjct: 61  LVSVFVEGAAEVEKKYIFS---SFIRDHAKLVLNFENGKVTVLPVKGNVLARIGNLFFLY 120

Query: 121 ---------------RCVVK----VKDLKMKIWKKLNGQEIVNC 139
                           C+VK    + ++  ++ KKLN    V+C
Sbjct: 121 GGLWLPLPGANGGLGGCIVKLRRTISEIGEQMGKKLNKSSQVSC 161

BLAST of MS024625 vs. ExPASy TrEMBL
Match: A0A2P5A3Z1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_358320 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.5e-06
Identity = 40/109 (36.70%), Postives = 54/109 (49.54%), Query Frame = 0

Query: 5   LSRVTRLENHHSDPVVYRVIRGPGNFLVLEHEILPGRHVDVSHSDFKIRYNVNRRVKLRV 64
           LS  TRLEN H++P+V R  +           I PG  V V +SD  I YN ++   L  
Sbjct: 3   LSMSTRLENRHTEPIVVRAKKNGFPIDEFNVTIQPGTSVHVYYSDLGIEYNYSQPHVL-A 62

Query: 65  YVQGREEAEAATCLSLSTSQIRDNARIRFGYVNGKFSVTEINGKLLTRI 114
           + +G+E       L   TS +R +  I FG+ NG  +V  I GK L RI
Sbjct: 63  FPEGQENQGQTVVL---TSAVRSSEVIVFGFENGLVTVKPIKGKFLPRI 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030956942.14.8e-1136.09uncharacterized protein LOC115979117 [Quercus lobata] >XP_030961949.1 uncharacte... [more]
XP_015580975.11.2e-0931.69uncharacterized protein LOC8276201 [Ricinus communis] >XP_015580977.1 uncharacte... [more]
EEF33015.13.4e-0932.58conserved hypothetical protein [Ricinus communis][more]
XP_035544280.15.5e-0732.35uncharacterized protein LOC109003737 [Juglans regia] >KAF5482104.1 hypothetical ... [more]
PON83623.11.2e-0632.73hypothetical protein TorRG33x02_205800 [Trema orientale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
B9STM91.7e-0932.58Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0825780 PE=4 SV=1[more]
A0A2I4G1962.7e-0732.35uncharacterized protein LOC109003737 OS=Juglans regia OX=51240 GN=LOC109003737 P... [more]
A0A2P5EDL35.9e-0732.73Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_205800 PE=4 SV... [more]
B9STN03.8e-0627.44Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0825890 PE=4 SV=1[more]
A0A2P5A3Z18.5e-0636.70Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_358320 PE=4 SV... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS024625.1MS024625.1mRNA