MS024403 (gene) Bitter gourd (TR) v1

Overview
NameMS024403
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibonuclease H
Locationscaffold111: 101132 .. 102124 (-)
RNA-Seq ExpressionMS024403
SyntenyMS024403
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTATAACGGGGTCAGAACGAGCTTAAAACGCCAACCAGGTACAACCGGGAGATTCCTGCAGCTTAGCTATGTCAAAACTAGCTTATCGGGTCCAACGGACGCCTCTAAGACCATTCCTGTCGAGAAACTAGTCAATAACGGGCTAAACGGCCTTATCGGGTACTGCCGGGATGATTCCTACCGAGATCCGGACAAGGAATGACTAAACTTGGCAACCGGGATGAGTCTTGCCGCTTCCCGGGCAAAGACTAGCTTTTTCTCACTTACCGGGTGCCCACCGATACTATAGGATGCCACCCCGAGCATCGGGATGTCATCGGGCTTTGCTGATCACTTGGGCACTCATATCGAGAACCGACCCATGGACTTGTATTTATGATCGGGACCTTTCGGACATCCATCCATCCGGACATAATCGAGGCACGTCGACTCCCACGGCCGTGTCTTGATTGTTCGAGCATACCGTACCGCATAACGGCCTCTATGTGCAACCTCTAGCCCATAGGACGAGGCGCAATGCCGGCACACCCATGCCGTTCGACACTGTCCTTGAGATTCTCATTCTCGAAAGAAGACGCACAAGACCTTGGTCTTGCAACGTTCGCCCCCGCCATGACACACGCATGTGCCATGGGGTAGCTCACTTAGGCCACAGGGCCCAAGGGTGGTGGAGAGCTGACACCATGCCTCCCCCTAAGGTACATTCTAAGGCATTATTGGTCTGTTAGGCGTGTACGTGCAAAGTGGCGAGGAGTCACTCGCCAACGTAGAGAGCACGTCTGAACTCCGATTGACACGAAACTTGGAGTGCTTGCATATCTCACTTATATGCATCTAACTCTAAAGCCGCTCGTCCAAACTCTCAATGAAACCCTTACTTCTAGGGTCATGGCCTGGGGCCCGAATTGGCCCCGCTAAGCTTGTCACCGACACCACTGACATCGCCTTCGCCTTGCATTTTGCATATGCCTTCTCTAGACATTCTTGA

mRNA sequence

ATGACCTATAACGGGGTCAGAACGAGCTTAAAACGCCAACCAGGTACAACCGGGAGATTCCTGCAGCTTAGCTATGTCAAAACTAGCTTATCGGGTCCAACGGACGCCTCTAAGACCATTCCTGTCGAGAAACTAGTCAATAACGGGCTAAACGGCCTTATCGGCCGCTCGTCCAAACTCTCAATGAAACCCTTACTTCTAGGGTCATGGCCTGGGGCCCGAATTGGCCCCGCTAAGCTTGTCACCGACACCACTGACATCGCCTTCGCCTTGCATTTTGCATATGCCTTCTCTAGACATTCTTGA

Coding sequence (CDS)

ATGACCTATAACGGGGTCAGAACGAGCTTAAAACGCCAACCAGGTACAACCGGGAGATTCCTGCAGCTTAGCTATGTCAAAACTAGCTTATCGGGTCCAACGGACGCCTCTAAGACCATTCCTGTCGAGAAACTAGTCAATAACGGGCTAAACGGCCTTATCGGCCGCTCGTCCAAACTCTCAATGAAACCCTTACTTCTAGGGTCATGGCCTGGGGCCCGAATTGGCCCCGCTAAGCTTGTCACCGACACCACTGACATCGCCTTCGCCTTGCATTTTGCATATGCCTTCTCTAGACATTCTTGA

Protein sequence

MTYNGVRTSLKRQPGTTGRFLQLSYVKTSLSGPTDASKTIPVEKLVNNGLNGLIGRSSKLSMKPLLLGSWPGARIGPAKLVTDTTDIAFALHFAYAFSRHS
Homology
[Close]
BLAST of MS024403 vs. NCBI nr
Match: XP_022136647.1 (uncharacterized protein LOC111008302 [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-08
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 22  QLSYVKTSLSGPTDASKTIPVEKLVNNGLNGLIG 56
           QLSYVKTSLSGPTDASKTIP+EKLVNNGLNGLIG
Sbjct: 527 QLSYVKTSLSGPTDASKTIPIEKLVNNGLNGLIG 560

[Close]
BLAST of MS024403 vs. ExPASy TrEMBL
Match: A0A6J1C617 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 22  QLSYVKTSLSGPTDASKTIPVEKLVNNGLNGLIG 56
           QLSYVKTSLSGPTDASKTIP+EKLVNNGLNGLIG
Sbjct: 527 QLSYVKTSLSGPTDASKTIPIEKLVNNGLNGLIG 560

The following BLAST results are available for this feature:
BLAST of MS024403 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022136647.12.8e-0897.06uncharacterized protein LOC111008302 [Momordica charantia][more]
BLAST of MS024403 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS024403 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C6171.3e-0897.06Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1[more]
BLAST of MS024403 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS024403.1MS024403.1mRNA