MS024320 (gene) Bitter gourd (TR) v1

Overview
NameMS024320
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransmembrane protein 230
Locationscaffold30: 3167465 .. 3167814 (-)
RNA-Seq ExpressionMS024320
SyntenyMS024320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGATTCGCCGTTCGCGGTGAACAACCGGCCACCATTCAAGGAGATCGCTCTCGCCGTCGCTCTTCTCGTTTTCGGCACCATTGGAATCGTCGTTGGAATCGTCATGGCCAGTAATCGAGTCGGTGGTGATCGTGCTCACGGTACTTTTCTTGCCTTTCTTTTTCCGCTGCAATTTTGCCCTAGTTCAACTTTAATTTTCTGCCTCTTTCTTGAAAATTTTCAGGGGTGTTTTTCTCTTTGTTGGGAGGTCTCTTGTTTATTCCGGGTTTCTATTACACGCGGATTGCCTACTACGCTTATAAGGGTTTCAAAGGCTTCTCCTTCTCCAACATACCCCCTGTCTAA

mRNA sequence

ATGATGGATTCGCCGTTCGCGGTGAACAACCGGCCACCATTCAAGGAGATCGCTCTCGCCGTCGCTCTTCTCGTTTTCGGCACCATTGGAATCGTCGTTGGAATCGTCATGGCCAGTAATCGAGTCGGTGGTGATCGTGCTCACGGGGTGTTTTTCTCTTTGTTGGGAGGTCTCTTGTTTATTCCGGGTTTCTATTACACGCGGATTGCCTACTACGCTTATAAGGGTTTCAAAGGCTTCTCCTTCTCCAACATACCCCCTGTCTAA

Coding sequence (CDS)

ATGATGGATTCGCCGTTCGCGGTGAACAACCGGCCACCATTCAAGGAGATCGCTCTCGCCGTCGCTCTTCTCGTTTTCGGCACCATTGGAATCGTCGTTGGAATCGTCATGGCCAGTAATCGAGTCGGTGGTGATCGTGCTCACGGGGTGTTTTTCTCTTTGTTGGGAGGTCTCTTGTTTATTCCGGGTTTCTATTACACGCGGATTGCCTACTACGCTTATAAGGGTTTCAAAGGCTTCTCCTTCTCCAACATACCCCCTGTCTAA

Protein sequence

MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRIAYYAYKGFKGFSFSNIPPV
Homology
BLAST of MS024320 vs. NCBI nr
Match: XP_022134647.1 (transmembrane protein 230 [Momordica charantia])

HSP 1 Score: 176.8 bits (447), Expect = 8.2e-41
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1   MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLF 60
           MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLF
Sbjct: 16  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLF 75

Query: 61  IPGFYYTRIAYYAYKGFKGFSFSNIPPV 89
           IPGFYYTRIAYYAYKGFKGFSFSNIPPV
Sbjct: 76  IPGFYYTRIAYYAYKGFKGFSFSNIPPV 103

BLAST of MS024320 vs. NCBI nr
Match: XP_008453547.1 (PREDICTED: transmembrane protein 230-like [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 5.5e-37
Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 0

Query: 1   MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLF 60
           MMDSPF VNNRPP KEIALAV+LLVFG IGI+VG  MASNRVGGDRAHGVFFSLLGGLLF
Sbjct: 16  MMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGDRAHGVFFSLLGGLLF 75

Query: 61  IPGFYYTRIAYYAYKGFKGFSFSNIPPV 89
           IPGFYYTRIAYYAYKG+KGFSFSNIPPV
Sbjct: 76  IPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

BLAST of MS024320 vs. NCBI nr
Match: XP_004146339.1 (transmembrane protein 230 [Cucumis sativus] >KGN65495.1 hypothetical protein Csa_019721 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 1.6e-36
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 0

Query: 1   MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLF 60
           MMDSPF VNNRPP KEIALAV+LLVFG IGI+VG  MASNRVGGDR HGVFFSLLGGLLF
Sbjct: 16  MMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGDRVHGVFFSLLGGLLF 75

Query: 61  IPGFYYTRIAYYAYKGFKGFSFSNIPPV 89
           IPGFYYTRIAYYAYKG+KGFSFSNIPPV
Sbjct: 76  IPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

BLAST of MS024320 vs. NCBI nr
Match: XP_038879685.1 (transmembrane protein 230 [Benincasa hispida])

HSP 1 Score: 162.2 bits (409), Expect = 2.1e-36
Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = 0

Query: 1   MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLF 60
           MMDSPF VNNRPP KEIALAV+LLVFG IGIVVG  MASNRVGGDRAHGVFFSLLG LLF
Sbjct: 16  MMDSPFTVNNRPPIKEIALAVSLLVFGMIGIVVGAFMASNRVGGDRAHGVFFSLLGALLF 75

Query: 61  IPGFYYTRIAYYAYKGFKGFSFSNIPPV 89
           IPGFYYTRIAYYAYKG+KGFSFSNIPPV
Sbjct: 76  IPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

BLAST of MS024320 vs. NCBI nr
Match: KAG7021684.1 (Transmembrane protein-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.2 bits (409), Expect = 2.1e-36
Identity = 80/88 (90.91%), Postives = 82/88 (93.18%), Query Frame = 0

Query: 1   MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLF 60
           MMDSPF VNNRPP KEIALAV+LL FG IGIVVGI MASNRVGGDRAHGVFFSLLG LLF
Sbjct: 16  MMDSPFTVNNRPPIKEIALAVSLLFFGMIGIVVGIFMASNRVGGDRAHGVFFSLLGALLF 75

Query: 61  IPGFYYTRIAYYAYKGFKGFSFSNIPPV 89
           IPGFYYTRIAYYAYKG+KGFSFSNIPPV
Sbjct: 76  IPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

BLAST of MS024320 vs. ExPASy Swiss-Prot
Match: Q5ZLH4 (Transmembrane protein 230 OS=Gallus gallus OX=9031 GN=TMEM230 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.1e-11
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 0

Query: 13  PFKEIALAVALLVFGTIGIVVGIVMASNRV---GGDRAHGVFFSLLGGLLFIPGFYYTRI 72
           P+K IALAV L + GT  I++G ++ +  +   G DRA  V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALAVVLFMIGTFLIIIGALLLAGYISKGGTDRAIPVL--IIGILVFLPGFYHLRI 101

Query: 73  AYYAYKGFKGFSFSNIP 87
           AYYA KG++G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

BLAST of MS024320 vs. ExPASy Swiss-Prot
Match: Q8CIB6 (Transmembrane protein 230 OS=Mus musculus OX=10090 GN=Tmem230 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.1e-11
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 0

Query: 13  PFKEIALAVALLVFGTIGIVVGIVMASNRV---GGDRAHGVFFSLLGGLLFIPGFYYTRI 72
           P+K IALA  L + GT  I++G ++ S  +   G DRA  V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 101

Query: 73  AYYAYKGFKGFSFSNIP 87
           AYYA KG++G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

BLAST of MS024320 vs. ExPASy Swiss-Prot
Match: Q5BJP5 (Transmembrane protein 230 OS=Rattus norvegicus OX=10116 GN=Tmem230 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.1e-11
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 0

Query: 13  PFKEIALAVALLVFGTIGIVVGIVMASNRV---GGDRAHGVFFSLLGGLLFIPGFYYTRI 72
           P+K IALA  L + GT  I++G ++ S  +   G DRA  V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 101

Query: 73  AYYAYKGFKGFSFSNIP 87
           AYYA KG++G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

BLAST of MS024320 vs. ExPASy Swiss-Prot
Match: Q96A57 (Transmembrane protein 230 OS=Homo sapiens OX=9606 GN=TMEM230 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-10
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 13  PFKEIALAVALLVFGTIGIVVGIVMASNRV---GGDRAHGVFFSLLGGLLFIPGFYYTRI 72
           P+K IALA  L + G   I++G ++ S  +   G DRA  V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 101

Query: 73  AYYAYKGFKGFSFSNIP 87
           AYYA KG++G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

BLAST of MS024320 vs. ExPASy Swiss-Prot
Match: Q5R8X3 (Transmembrane protein 230 OS=Pongo abelii OX=9601 GN=TMEM230 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-10
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 13  PFKEIALAVALLVFGTIGIVVGIVMASNRV---GGDRAHGVFFSLLGGLLFIPGFYYTRI 72
           P+K IALA  L + G   I++G ++ S  +   G DRA  V   ++G L+F+PGFY+ RI
Sbjct: 42  PYKAIALATGLFLIGAFLIIIGSLLLSGYISKGGADRAIPVL--IIGILVFLPGFYHLRI 101

Query: 73  AYYAYKGFKGFSFSNIP 87
           AYYA KG++G+S+ +IP
Sbjct: 102 AYYASKGYRGYSYDDIP 116

BLAST of MS024320 vs. ExPASy TrEMBL
Match: A0A6J1C066 (Transmembrane protein 230 OS=Momordica charantia OX=3673 GN=LOC111006871 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.0e-41
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1   MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLF 60
           MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLF
Sbjct: 16  MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLF 75

Query: 61  IPGFYYTRIAYYAYKGFKGFSFSNIPPV 89
           IPGFYYTRIAYYAYKGFKGFSFSNIPPV
Sbjct: 76  IPGFYYTRIAYYAYKGFKGFSFSNIPPV 103

BLAST of MS024320 vs. ExPASy TrEMBL
Match: A0A1S3BWL2 (Transmembrane protein 230 OS=Cucumis melo OX=3656 GN=LOC103494229 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.7e-37
Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 0

Query: 1   MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLF 60
           MMDSPF VNNRPP KEIALAV+LLVFG IGI+VG  MASNRVGGDRAHGVFFSLLGGLLF
Sbjct: 16  MMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGDRAHGVFFSLLGGLLF 75

Query: 61  IPGFYYTRIAYYAYKGFKGFSFSNIPPV 89
           IPGFYYTRIAYYAYKG+KGFSFSNIPPV
Sbjct: 76  IPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

BLAST of MS024320 vs. ExPASy TrEMBL
Match: A0A0A0LUC1 (Transmembrane protein 230 OS=Cucumis sativus OX=3659 GN=Csa_1G426960 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.8e-37
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 0

Query: 1   MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLF 60
           MMDSPF VNNRPP KEIALAV+LLVFG IGI+VG  MASNRVGGDR HGVFFSLLGGLLF
Sbjct: 16  MMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGDRVHGVFFSLLGGLLF 75

Query: 61  IPGFYYTRIAYYAYKGFKGFSFSNIPPV 89
           IPGFYYTRIAYYAYKG+KGFSFSNIPPV
Sbjct: 76  IPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

BLAST of MS024320 vs. ExPASy TrEMBL
Match: A0A6J1I4W8 (Transmembrane protein 230 OS=Cucurbita maxima OX=3661 GN=LOC111470698 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 0

Query: 1   MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLF 60
           MMDSPF VNNRPP KEIALAV+LL FG IGI+VGI MASNRVGGDRAHGVFFSLLG LLF
Sbjct: 16  MMDSPFTVNNRPPIKEIALAVSLLFFGMIGIIVGIFMASNRVGGDRAHGVFFSLLGALLF 75

Query: 61  IPGFYYTRIAYYAYKGFKGFSFSNIPPV 89
           IPGFYYTRIAYYAYKG+KGFSFSNIPPV
Sbjct: 76  IPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

BLAST of MS024320 vs. ExPASy TrEMBL
Match: A0A6J1EUE9 (Transmembrane protein 230 OS=Cucurbita moschata OX=3662 GN=LOC111437657 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 0

Query: 1   MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLF 60
           MMDSPF VNNRPP KEIALAV+LL FG IGI+VGI MASNRVGGDRAHGVFFSLLG LLF
Sbjct: 16  MMDSPFTVNNRPPIKEIALAVSLLFFGMIGIIVGIFMASNRVGGDRAHGVFFSLLGALLF 75

Query: 61  IPGFYYTRIAYYAYKGFKGFSFSNIPPV 89
           IPGFYYTRIAYYAYKG+KGFSFSNIPPV
Sbjct: 76  IPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

BLAST of MS024320 vs. TAIR 10
Match: AT4G29850.1 (Eukaryotic protein of unknown function (DUF872) )

HSP 1 Score: 145.2 bits (365), Expect = 2.5e-35
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 0

Query: 1   MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLF 60
           M+++ + VNNRPP KEIALAVALLVFGT+GIV G  MA NRVGGDR HG+FF +LG LLF
Sbjct: 16  MIETSYTVNNRPPVKEIALAVALLVFGTLGIVSGFFMAYNRVGGDRGHGIFFIVLGCLLF 75

Query: 61  IPGFYYTRIAYYAYKGFKGFSFSNIPPV 89
           IPGFYYTRIAYYAYKG+KGFSFSNIPPV
Sbjct: 76  IPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

BLAST of MS024320 vs. TAIR 10
Match: AT2G19350.1 (Eukaryotic protein of unknown function (DUF872) )

HSP 1 Score: 137.5 bits (345), Expect = 5.2e-33
Identity = 66/88 (75.00%), Postives = 76/88 (86.36%), Query Frame = 0

Query: 1   MMDSPFAVNNRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLF 60
           M+ + + V+NRPP KEI+LAV LLVFGT+GIV+G  MA NRVGGDR HG+FF +LG LLF
Sbjct: 16  MIGTSYTVSNRPPVKEISLAVGLLVFGTLGIVLGFFMAYNRVGGDRGHGIFFIVLGCLLF 75

Query: 61  IPGFYYTRIAYYAYKGFKGFSFSNIPPV 89
           IPGFYYTRIAYYAYKG+KGFSFSNIP V
Sbjct: 76  IPGFYYTRIAYYAYKGYKGFSFSNIPSV 103

BLAST of MS024320 vs. TAIR 10
Match: AT3G29170.1 (Eukaryotic protein of unknown function (DUF872) )

HSP 1 Score: 64.3 bits (155), Expect = 5.6e-11
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 0

Query: 10  NRPPFKEIALAVALLVFGTIGIVVGIVMASNRVGGDRAHGVFFSLLGGLLFIPGFYYTRI 69
           +R P+K IALAV LL  G + +++   +    + GD + G    +LG L F+PGFY TRI
Sbjct: 43  DRVPWKSIALAVFLLFLGCLLLLLSFFIFIGHMEGDSSQGYALLVLGILTFLPGFYETRI 102

Query: 70  AYYAYKGFKGFSFSNIP 87
           AYY+++G +G+ F+ IP
Sbjct: 103 AYYSWRGAEGYRFAAIP 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022134647.18.2e-41100.00transmembrane protein 230 [Momordica charantia][more]
XP_008453547.15.5e-3790.91PREDICTED: transmembrane protein 230-like [Cucumis melo][more]
XP_004146339.11.6e-3689.77transmembrane protein 230 [Cucumis sativus] >KGN65495.1 hypothetical protein Csa... [more]
XP_038879685.12.1e-3690.91transmembrane protein 230 [Benincasa hispida][more]
KAG7021684.12.1e-3690.91Transmembrane protein-like protein [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
Q5ZLH47.1e-1146.75Transmembrane protein 230 OS=Gallus gallus OX=9031 GN=TMEM230 PE=2 SV=1[more]
Q8CIB67.1e-1146.75Transmembrane protein 230 OS=Mus musculus OX=10090 GN=Tmem230 PE=1 SV=1[more]
Q5BJP57.1e-1146.75Transmembrane protein 230 OS=Rattus norvegicus OX=10116 GN=Tmem230 PE=1 SV=1[more]
Q96A572.7e-1045.45Transmembrane protein 230 OS=Homo sapiens OX=9606 GN=TMEM230 PE=1 SV=1[more]
Q5R8X32.7e-1045.45Transmembrane protein 230 OS=Pongo abelii OX=9601 GN=TMEM230 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1C0664.0e-41100.00Transmembrane protein 230 OS=Momordica charantia OX=3673 GN=LOC111006871 PE=3 SV... [more]
A0A1S3BWL22.7e-3790.91Transmembrane protein 230 OS=Cucumis melo OX=3656 GN=LOC103494229 PE=3 SV=1[more]
A0A0A0LUC17.8e-3789.77Transmembrane protein 230 OS=Cucumis sativus OX=3659 GN=Csa_1G426960 PE=3 SV=1[more]
A0A6J1I4W81.3e-3689.77Transmembrane protein 230 OS=Cucurbita maxima OX=3661 GN=LOC111470698 PE=3 SV=1[more]
A0A6J1EUE91.3e-3689.77Transmembrane protein 230 OS=Cucurbita moschata OX=3662 GN=LOC111437657 PE=3 SV=... [more]
Match NameE-valueIdentityDescription
AT4G29850.12.5e-3579.55Eukaryotic protein of unknown function (DUF872) [more]
AT2G19350.15.2e-3375.00Eukaryotic protein of unknown function (DUF872) [more]
AT3G29170.15.6e-1142.86Eukaryotic protein of unknown function (DUF872) [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008590Transmembrane protein 230/134PFAMPF05915DUF872coord: 14..86
e-value: 4.1E-16
score: 59.2
IPR044234Transmembrane protein 230PANTHERPTHR15664C20ORF30 PROTEINcoord: 1..88
NoneNo IPR availablePANTHERPTHR15664:SF18TRANSMEMBRANE PROTEIN 230-LIKEcoord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS024320.1MS024320.1mRNA