MS024172 (gene) Bitter gourd (TR) v1

Overview
NameMS024172
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAutophagy-related 18
Locationscaffold36: 3542772 .. 3543450 (-)
RNA-Seq ExpressionMS024172
SyntenyMS024172
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAAGTCTAAGATGAAGAGAGCGTCGATCGGTTCTCGTAAATCCGCCATTGTTCATGAAGAATCGGAAGCAAGGCGTAAATATCAAATTCTGCTGCAAGATTTCTTGGAAGTCCAGAAGGTTCGGTTTCTTCTCTCTCGAATTGCAGAGTGTGTTGAGGAACGAGGAGCGATTATATCACAGTTTTGAAATTTCATTTTATTTTTTCTGCAGGATTTTGTTTCGAAGAAGAGAAAATTGCAGGTTCTAAGACAGAGGAAGGAGACTCATGGAGCAGAAGTTAGGTAATGATTCTTCGGACTTTCATAAGCTTTCCGAAAATCTATCGATTATAATTAGTTCTCTAATGGCGGGTTTCATTTTCTCTGAACAGATTTTTGAGACAAAGGCTCGAATATCTGCAGAAGTTGCAGAATCGTAAACATGATTCAATTTCAGAGGACCTGCCCATGGTTTTGGAAACGAAGCAGAATCTGGTAAAGAAATCGATATGGAATTTTTTTTCTTTATGGAGGATTGATTAAGAAAATTTAGATTGGCAATAAATGGAGGATTGTGATTGTAGGATGGTGTGGAAGAGGAGAAGTTTCAGAATAAGGCCTTAGGCATCAACAAAATGGTGGGAAAAATTAAAACTTTAGGGCAAGCGCGAGATATTAACTCGGTTCCTTCGTGA

mRNA sequence

ATGTCAAAGTCTAAGATGAAGAGAGCGTCGATCGGTTCTCGTAAATCCGCCATTGTTCATGAAGAATCGGAAGCAAGGCGTAAATATCAAATTCTGCTGCAAGATTTCTTGGAAGTCCAGAAGGATTTTGTTTCGAAGAAGAGAAAATTGCAGGTTCTAAGACAGAGGAAGGAGACTCATGGAGCAGAAGTTAGATTTTTGAGACAAAGGCTCGAATATCTGCAGAAGTTGCAGAATCGTAAACATGATTCAATTTCAGAGGACCTGCCCATGGTTTTGGAAACGAAGCAGAATCTGGATGGTGTGGAAGAGGAGAAGTTTCAGAATAAGGCCTTAGGCATCAACAAAATGGTGGGAAAAATTAAAACTTTAGGGCAAGCGCGAGATATTAACTCGGTTCCTTCGTGA

Coding sequence (CDS)

ATGTCAAAGTCTAAGATGAAGAGAGCGTCGATCGGTTCTCGTAAATCCGCCATTGTTCATGAAGAATCGGAAGCAAGGCGTAAATATCAAATTCTGCTGCAAGATTTCTTGGAAGTCCAGAAGGATTTTGTTTCGAAGAAGAGAAAATTGCAGGTTCTAAGACAGAGGAAGGAGACTCATGGAGCAGAAGTTAGATTTTTGAGACAAAGGCTCGAATATCTGCAGAAGTTGCAGAATCGTAAACATGATTCAATTTCAGAGGACCTGCCCATGGTTTTGGAAACGAAGCAGAATCTGGATGGTGTGGAAGAGGAGAAGTTTCAGAATAAGGCCTTAGGCATCAACAAAATGGTGGGAAAAATTAAAACTTTAGGGCAAGCGCGAGATATTAACTCGGTTCCTTCGTGA

Protein sequence

MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNLDGVEEEKFQNKALGINKMVGKIKTLGQARDINSVPS
Homology
BLAST of MS024172 vs. NCBI nr
Match: XP_022132126.1 (uncharacterized protein LOC111005070 [Momordica charantia])

HSP 1 Score: 245.4 bits (625), Expect = 2.9e-61
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0

Query: 1   MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETH 60
           MS+SKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKET 
Sbjct: 1   MSESKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETL 60

Query: 61  GAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNLDGVEEEKFQNKALGINKMVGK 120
           GAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNLDGVEEEKFQNKALGINKMVGK
Sbjct: 61  GAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNLDGVEEEKFQNKALGINKMVGK 120

Query: 121 IKTLGQARDINSVPS 136
           IKTLGQARDINSVPS
Sbjct: 121 IKTLGQARDINSVPS 135

BLAST of MS024172 vs. NCBI nr
Match: XP_038884216.1 (uncharacterized protein LOC120075114 isoform X1 [Benincasa hispida])

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-14
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 37  LEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETK 96
           LE+QK+ VSK RKL+VL+QRKET   EV FLR+RL YLQKLQNR HD   E+LPMVLE+K
Sbjct: 47  LEIQKELVSKNRKLKVLKQRKETLEDEVGFLRRRLWYLQKLQNRSHD--LENLPMVLESK 106

Query: 97  QNLDGVEEEK 107
           QNLDGVEE+K
Sbjct: 107 QNLDGVEEDK 114

BLAST of MS024172 vs. NCBI nr
Match: XP_038884217.1 (uncharacterized protein LOC120075114 isoform X2 [Benincasa hispida])

HSP 1 Score: 77.8 bits (190), Expect = 8.0e-11
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 37  LEVQKDFVSKKRKLQVLRQRKETHGAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETK 96
           LE+QK+ VSK RKL+VL+QRKET   EV FLR+RL YLQKLQNR HD   E+LPMVLE+K
Sbjct: 47  LEIQKELVSKNRKLKVLKQRKETLEDEVGFLRRRLWYLQKLQNRSHD--LENLPMVLESK 106

Query: 97  QNL 100
           QNL
Sbjct: 107 QNL 107

BLAST of MS024172 vs. NCBI nr
Match: KAG6772902.1 (hypothetical protein POTOM_024331 [Populus tomentosa])

HSP 1 Score: 77.8 bits (190), Expect = 8.0e-11
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 0

Query: 1  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETH 60
          MSK+  KR ++ S +S  V+E +  R KYQ LL+DFLE+QKDFVSKKRKL+ + Q++E  
Sbjct: 1  MSKNNKKRVAVNSHQSQFVNEGAINRVKYQNLLEDFLELQKDFVSKKRKLRTVEQKREIL 60

Query: 61 GAEVRFLRQRLEYLQKLQ 79
           AEVRFLRQR E+  K+Q
Sbjct: 61 SAEVRFLRQRHEFFMKMQ 78

BLAST of MS024172 vs. NCBI nr
Match: XP_002308710.2 (uncharacterized protein LOC7489157 [Populus trichocarpa] >PNT33918.1 hypothetical protein POPTR_006G264900 [Populus trichocarpa])

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-10
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 0

Query: 1  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETH 60
          MSK+  KR ++ S +S  V E +  R KYQ LL+DFLE+QKDFVSKKRKL+ + Q++E  
Sbjct: 1  MSKNNKKRVAVNSHQSQFVDEGAINRVKYQNLLEDFLELQKDFVSKKRKLRTVEQKREIL 60

Query: 61 GAEVRFLRQRLEYLQKLQN 80
           AEVRFLRQR E+  K+Q+
Sbjct: 61 SAEVRFLRQRHEFFMKMQS 79

BLAST of MS024172 vs. ExPASy TrEMBL
Match: A0A6J1BRD5 (uncharacterized protein LOC111005070 OS=Momordica charantia OX=3673 GN=LOC111005070 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-61
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0

Query: 1   MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETH 60
           MS+SKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKET 
Sbjct: 1   MSESKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETL 60

Query: 61  GAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNLDGVEEEKFQNKALGINKMVGK 120
           GAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNLDGVEEEKFQNKALGINKMVGK
Sbjct: 61  GAEVRFLRQRLEYLQKLQNRKHDSISEDLPMVLETKQNLDGVEEEKFQNKALGINKMVGK 120

Query: 121 IKTLGQARDINSVPS 136
           IKTLGQARDINSVPS
Sbjct: 121 IKTLGQARDINSVPS 135

BLAST of MS024172 vs. ExPASy TrEMBL
Match: A0A2K2A8R5 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G264900 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.1e-11
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 0

Query: 1  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETH 60
          MSK+  KR ++ S +S  V E +  R KYQ LL+DFLE+QKDFVSKKRKL+ + Q++E  
Sbjct: 1  MSKNNKKRVAVNSHQSQFVDEGAINRVKYQNLLEDFLELQKDFVSKKRKLRTVEQKREIL 60

Query: 61 GAEVRFLRQRLEYLQKLQN 80
           AEVRFLRQR E+  K+Q+
Sbjct: 61 SAEVRFLRQRHEFFMKMQS 79

BLAST of MS024172 vs. ExPASy TrEMBL
Match: A0A6M2FAA9 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.1e-11
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 0

Query: 1  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETH 60
          MSK+  KR ++ S +S  V+E +  R KYQ LL+DFLE+QKDFVSKKRKL+ + Q++E  
Sbjct: 1  MSKNDKKRVAVNSHQSQFVNEGAINRVKYQNLLEDFLELQKDFVSKKRKLRTVEQKREIL 60

Query: 61 GAEVRFLRQRLEYLQKLQ 79
           AEVRFLRQR E+  K+Q
Sbjct: 61 SAEVRFLRQRHEFFMKMQ 78

BLAST of MS024172 vs. ExPASy TrEMBL
Match: A0A4U5QM20 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000068340 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.1e-11
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 0

Query: 1  MSKSKMKRASIGSRKSAIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETH 60
          MSK+  KR ++ S +S  V+E +  R KYQ LL+DFLE+QKDFVSKKRKL+ + Q++E  
Sbjct: 1  MSKNDKKRVAVNSHQSQFVNEGAINRVKYQNLLEDFLELQKDFVSKKRKLRTVEQKREIL 60

Query: 61 GAEVRFLRQRLEYLQKLQ 79
           AEVRFLRQR E+  K+Q
Sbjct: 61 SAEVRFLRQRHEFFMKMQ 78

BLAST of MS024172 vs. ExPASy TrEMBL
Match: A0A1R3J7E0 (Ubiquitin OS=Corchorus olitorius OX=93759 GN=COLO4_18958 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 6.6e-11
Identity = 46/85 (54.12%), Postives = 67/85 (78.82%), Query Frame = 0

Query: 6  MKRASIGSRKS-AIVHEESEARRKYQILLQDFLEVQKDFVSKKRKLQVLRQRKETHGAEV 65
          MKRASI SR+    V EE++AR K+Q LLQ+FLE+QK+FV KKRKLQ ++Q++ET  AEV
Sbjct: 1  MKRASINSRQQYNSVDEEAKARLKHQNLLQEFLELQKEFVGKKRKLQAVKQKRETLLAEV 60

Query: 66 RFLRQRLEYLQKLQNRKHDSISEDL 90
          +FLRQR  YL  +++++++ + +DL
Sbjct: 61 QFLRQRYSYLSMIKSQEYE-VEQDL 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022132126.12.9e-6198.52uncharacterized protein LOC111005070 [Momordica charantia][more]
XP_038884216.12.0e-1472.86uncharacterized protein LOC120075114 isoform X1 [Benincasa hispida][more]
XP_038884217.18.0e-1171.43uncharacterized protein LOC120075114 isoform X2 [Benincasa hispida][more]
KAG6772902.18.0e-1156.41hypothetical protein POTOM_024331 [Populus tomentosa][more]
XP_002308710.21.0e-1055.70uncharacterized protein LOC7489157 [Populus trichocarpa] >PNT33918.1 hypothetica... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BRD51.4e-6198.52uncharacterized protein LOC111005070 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A2K2A8R55.1e-1155.70Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G264900 PE=4 ... [more]
A0A6M2FAA95.1e-1156.41Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1[more]
A0A4U5QM205.1e-1156.41Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000068340 PE=4 SV=1[more]
A0A1R3J7E06.6e-1154.12Ubiquitin OS=Corchorus olitorius OX=93759 GN=COLO4_18958 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34807OS08G0270800 PROTEINcoord: 3..110
NoneNo IPR availablePANTHERPTHR34807:SF6SUBFAMILY NOT NAMEDcoord: 3..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS024172.1MS024172.1mRNA