MS024146 (gene) Bitter gourd (TR) v1

Overview
NameMS024146
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRagB/susD domain protein
Locationscaffold36: 272551 .. 273120 (-)
RNA-Seq ExpressionMS024146
SyntenyMS024146
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGGAGGAGGAGGAGAGGGAGGAAGGAGGAGGGGAGATGTTTTTGGTATATAATTTTGGAGGTGAAAGGAATGCTCTGATCTTGAAATTGAATGACGAGGGTGGAGAAGCGGCTCGATCGTACTCTTCGATGAGATTGGCGAGATCTTCGTCGGAGGTGATGGAAACTAGGGCATCCAGGTCTTCTCTTGGCAATTGGCAACGGAAGCTCACACAAACGGATGTTCCGCACAGCTGCCCGAACTTGAACAACAGCTCTGTACCGTACCATGTATTACAGTTATTGCAATTAGAATACAGAATACAGAGTACAGAACACAGAACACGAATACAGAGAAATGAAGCGGTTACCAGTAAAGGAAATGGAGCGGCTAACGGCAAGAAGGCGGGTTTCGCCACCGTGGTAGCGGAGTTTGCCGTCGGGATAGCGAGGGAGGATCTTGCCGCCGTAGCTGCAGAGGAACTTGAGGGTGAGAGCGTTGCGGTGGAGGGGAGGTCTGCCCATGTATCAGCTATTGGAATTGGATATTGGATATTGGATATTGGATATTGGATTACCAAATGA

mRNA sequence

ATGGAGGAGGAGGAGGAGGAGAGGGAGGAAGGAGGAGGGGAGATGTTTTTGGTATATAATTTTGGAGGTGAAAGGAATGCTCTGATCTTGAAATTGAATGACGAGGGTGGAGAAGCGGCTCGATCGTACTCTTCGATGAGATTGGCGAGATCTTCGTCGGAGGTGATGGAAACTAGGGCATCCAGGTCTTCTCTTGGCAATTGGCAACGGAAGCTCACACAAACGGATGTTCCGCACAGCTGCCCGAACTTGAACAACAGCTCTGTACCGTACCATGTATTACAGTTATTGCAATTAGAATACAGAATACAGAGTACAGAACACAGAACACGAATACAGAGAAATGAAGCGGTTACCAGTAAAGGAAATGGAGCGGCTAACGGCAAGAAGGCGGGTTTCGCCACCGTGGTAGCGGAGTTTGCCGTCGGGATAGCGAGGGAGGATCTTGCCGCCGTAGCTGCAGAGGAACTTGAGGGTGAGAGCGTTGCGGTGGAGGGGAGGTCTGCCCATGTATCAGCTATTGGAATTGGATATTGGATATTGGATATTGGATATTGGATTACCAAATGA

Coding sequence (CDS)

ATGGAGGAGGAGGAGGAGGAGAGGGAGGAAGGAGGAGGGGAGATGTTTTTGGTATATAATTTTGGAGGTGAAAGGAATGCTCTGATCTTGAAATTGAATGACGAGGGTGGAGAAGCGGCTCGATCGTACTCTTCGATGAGATTGGCGAGATCTTCGTCGGAGGTGATGGAAACTAGGGCATCCAGGTCTTCTCTTGGCAATTGGCAACGGAAGCTCACACAAACGGATGTTCCGCACAGCTGCCCGAACTTGAACAACAGCTCTGTACCGTACCATGTATTACAGTTATTGCAATTAGAATACAGAATACAGAGTACAGAACACAGAACACGAATACAGAGAAATGAAGCGGTTACCAGTAAAGGAAATGGAGCGGCTAACGGCAAGAAGGCGGGTTTCGCCACCGTGGTAGCGGAGTTTGCCGTCGGGATAGCGAGGGAGGATCTTGCCGCCGTAGCTGCAGAGGAACTTGAGGGTGAGAGCGTTGCGGTGGAGGGGAGGTCTGCCCATGTATCAGCTATTGGAATTGGATATTGGATATTGGATATTGGATATTGGATTACCAAATGA

Protein sequence

MEEEEEEREEGGGEMFLVYNFGGERNALILKLNDEGGEAARSYSSMRLARSSSEVMETRASRSSLGNWQRKLTQTDVPHSCPNLNNSSVPYHVLQLLQLEYRIQSTEHRTRIQRNEAVTSKGNGAANGKKAGFATVVAEFAVGIAREDLAAVAAEELEGESVAVEGRSAHVSAIGIGYWILDIGYWITK
Homology
BLAST of MS024146 vs. NCBI nr
Match: GAY36256.1 (hypothetical protein CUMW_020950, partial [Citrus unshiu])

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-07
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 0

Query: 2   EEEEEEREEGGGEMFLVYNFGGERNALILKLNDEGGEAARSYSSMRLARSSSEVMETRAS 61
           ++++EE EE G E+FL    G ER ALI K  ++GG+A RSYSSMR ARSSSEV+ET+AS
Sbjct: 47  DDDDEEEEEVGEEIFL----GSERKALIFK--EDGGDATRSYSSMRFARSSSEVIETKAS 106

Query: 62  RSSLGN 68
           RSS+GN
Sbjct: 107 RSSVGN 106

BLAST of MS024146 vs. NCBI nr
Match: EXB54451.1 (hypothetical protein L484_019010 [Morus notabilis])

HSP 1 Score: 62.4 bits (150), Expect = 4.9e-06
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 3   EEEEEREEGGGEMFLVYNFGGERNALILKLNDEGGEAARSYSSMRLARSSSEVMETRAS 62
           EE +E EEGGGE+FL+ +FGGER ALI   N +GG+AA SY SMR  RSSS+V+ET+AS
Sbjct: 239 EELKETEEGGGEIFLI-DFGGERKALI--FNADGGDAACSYFSMRFTRSSSQVIETKAS 294

BLAST of MS024146 vs. NCBI nr
Match: GER51554.1 (ragB/susD domain protein [Striga asiatica])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-05
Identity = 43/86 (50.00%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 3   EEEEEREEGGGEMFLVYNFGGERNALILKLNDEGGEAARSYSSMRLARSSSEVMETRASR 62
           EEE+E E+GG       +F  ERNALI      GG  AR YSS+R ARSSS+V +T ASR
Sbjct: 41  EEEDEAEDGGDG-----DFRAERNALIF-----GGAEARWYSSIRFARSSSDVTDTSASR 100

Query: 63  SSLGNWQRKLTQTDVPHSCPNLNNSS 89
           SS+GNW   L  T+ PH   +   SS
Sbjct: 101 SSVGNWH--LRFTEAPHISASFTTSS 114

BLAST of MS024146 vs. NCBI nr
Match: KAG5524875.1 (hypothetical protein RHGRI_031521 [Rhododendron griersonianum])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-05
Identity = 62/160 (38.75%), Postives = 79/160 (49.38%), Query Frame = 0

Query: 1   MEEEEEEREE--GGGEMFLVYNFGGERNALILKLNDEGGEAARSYSSMRLARSSSEVMET 60
           M  +E+ R E   GGE+FL  +F G   A+I +      E  R YSS+RL  SSSEV+ T
Sbjct: 1   MTTKEKSRLETVDGGEIFL-RDFRGNNTAVIFRSLFVDNE-NRLYSSIRLTSSSSEVIVT 60

Query: 61  RASRSSLGNWQRKLTQTDVPHSCPNLNNSSVPYHVLQLLQLEYRIQSTEHRTRIQRNEAV 120
           R SRSS+GN   K+ +   PHS  NL  SS                        +     
Sbjct: 61  RTSRSSVGNLHFKVMED--PHSSKNLTFSS------------------------KLENQP 120

Query: 121 TSKGNGAANGKKAGFATVVAEFAVGIAREDLAAVAAEELE 159
           T + +G  NG+ +G A  VAE AVG  RED A VA EEL+
Sbjct: 121 TCERDGTINGENSGVAADVAELAVGGPREDFATVAVEELD 132

BLAST of MS024146 vs. NCBI nr
Match: RWV81689.1 (hypothetical protein GW17_00056862 [Ensete ventricosum])

HSP 1 Score: 55.1 bits (131), Expect = 7.8e-04
Identity = 40/85 (47.06%), Postives = 49/85 (57.65%), Query Frame = 0

Query: 4   EEEEREEGGGEMFLVYNFGGERNALILKLNDEGGEAARSYSSMRLARSSSEVMETRASRS 63
           EEEE ++GG        F GE  + +          A SYSS RLARSSSEV ETRASRS
Sbjct: 56  EEEEHDDGGVRKRKARIFRGEGRSRL----------AMSYSSTRLARSSSEVTETRASRS 115

Query: 64  SLGNWQRKLTQTDVPHSCPNLNNSS 89
           S+G+W R+LT    PH+  +   SS
Sbjct: 116 SVGSWHRRLTAPH-PHNSLSFTCSS 129

BLAST of MS024146 vs. ExPASy TrEMBL
Match: A0A2H5N7S5 (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_020950 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.3e-08
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 0

Query: 2   EEEEEEREEGGGEMFLVYNFGGERNALILKLNDEGGEAARSYSSMRLARSSSEVMETRAS 61
           ++++EE EE G E+FL    G ER ALI K  ++GG+A RSYSSMR ARSSSEV+ET+AS
Sbjct: 47  DDDDEEEEEVGEEIFL----GSERKALIFK--EDGGDATRSYSSMRFARSSSEVIETKAS 106

Query: 62  RSSLGN 68
           RSS+GN
Sbjct: 107 RSSVGN 106

BLAST of MS024146 vs. ExPASy TrEMBL
Match: W9QU37 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019010 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-06
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 3   EEEEEREEGGGEMFLVYNFGGERNALILKLNDEGGEAARSYSSMRLARSSSEVMETRAS 62
           EE +E EEGGGE+FL+ +FGGER ALI   N +GG+AA SY SMR  RSSS+V+ET+AS
Sbjct: 239 EELKETEEGGGEIFLI-DFGGERKALI--FNADGGDAACSYFSMRFTRSSSQVIETKAS 294

BLAST of MS024146 vs. ExPASy TrEMBL
Match: A0A5A7R5D1 (RagB/susD domain protein OS=Striga asiatica OX=4170 GN=STAS_28942 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.9e-06
Identity = 43/86 (50.00%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 3   EEEEEREEGGGEMFLVYNFGGERNALILKLNDEGGEAARSYSSMRLARSSSEVMETRASR 62
           EEE+E E+GG       +F  ERNALI      GG  AR YSS+R ARSSS+V +T ASR
Sbjct: 41  EEEDEAEDGGDG-----DFRAERNALIF-----GGAEARWYSSIRFARSSSDVTDTSASR 100

Query: 63  SSLGNWQRKLTQTDVPHSCPNLNNSS 89
           SS+GNW   L  T+ PH   +   SS
Sbjct: 101 SSVGNWH--LRFTEAPHISASFTTSS 114

BLAST of MS024146 vs. ExPASy TrEMBL
Match: A0A444C740 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00056862 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.8e-04
Identity = 40/85 (47.06%), Postives = 49/85 (57.65%), Query Frame = 0

Query: 4   EEEEREEGGGEMFLVYNFGGERNALILKLNDEGGEAARSYSSMRLARSSSEVMETRASRS 63
           EEEE ++GG        F GE  + +          A SYSS RLARSSSEV ETRASRS
Sbjct: 56  EEEEHDDGGVRKRKARIFRGEGRSRL----------AMSYSSTRLARSSSEVTETRASRS 115

Query: 64  SLGNWQRKLTQTDVPHSCPNLNNSS 89
           S+G+W R+LT    PH+  +   SS
Sbjct: 116 SVGSWHRRLTAPH-PHNSLSFTCSS 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GAY36256.11.5e-0762.12hypothetical protein CUMW_020950, partial [Citrus unshiu][more]
EXB54451.14.9e-0664.41hypothetical protein L484_019010 [Morus notabilis][more]
GER51554.11.4e-0550.00ragB/susD domain protein [Striga asiatica][more]
KAG5524875.11.4e-0538.75hypothetical protein RHGRI_031521 [Rhododendron griersonianum][more]
RWV81689.17.8e-0447.06hypothetical protein GW17_00056862 [Ensete ventricosum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2H5N7S57.3e-0862.12Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_020950 PE=4... [more]
W9QU372.4e-0664.41Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019010 PE=4 SV=1[more]
A0A5A7R5D16.9e-0650.00RagB/susD domain protein OS=Striga asiatica OX=4170 GN=STAS_28942 PE=4 SV=1[more]
A0A444C7403.8e-0447.06Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00056862 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS024146.1MS024146.1mRNA