MS023782 (gene) Bitter gourd (TR) v1

Overview
NameMS023782
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPfkB domain-containing protein
Locationscaffold207: 203654 .. 203944 (+)
RNA-Seq ExpressionMS023782
SyntenyMS023782
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GACATGTCTTTATCGCAGTGGCTTGTAATGAGATATAGTATTTTTAACTTGGAAGTTATTCAAGTGGCTGTAAAGTTGGTCAAACAAGAGAAAGCTTTTGTGGTATATTCCTTGGCAAACCTCTATGTGCTTTTTATTTTGAAGAAGAGACTTTTGTATCATTTTAAAAGATGTGTTTAGAGGTAAATAAAGTAGCTCATATCTCTATATTTGGCCAGATGGTTCGAGATTTTAGATCTTCTCCAACTACTGGAGTCTGGGGATATAGACCTTTGCTTTGCCAACGAAAAC

mRNA sequence

GACATGTCTTTATCGCAGTGGCTTGTAATGAGATATAGTATTTTTAACTTGGAAGTTATTCAAGTGGCTGTAAAGTTGGTCAAACAAGAGAAAGCTTTTCTCATATCTCTATATTTGGCCAGATGGTTCGAGATTTTAGATCTTCTCCAACTACTGGAGTCTGGGGATATAGACCTTTGCTTTGCCAACGAAAAC

Coding sequence (CDS)

GACATGTCTTTATCGCAGTGGCTTGTAATGAGATATAGTATTTTTAACTTGGAAGTTATTCAAGTGGCTGTAAAGTTGGTCAAACAAGAGAAAGCTTTTCTCATATCTCTATATTTGGCCAGATGGTTCGAGATTTTAGATCTTCTCCAACTACTGGAGTCTGGGGATATAGACCTTTGCTTTGCCAACGAAAAC

Protein sequence

DMSLSQWLVMRYSIFNLEVIQVAVKLVKQEKAFLISLYLARWFEILDLLQLLESGDIDLCFANEN
Homology
BLAST of MS023782 vs. NCBI nr
Match: XP_022144332.1 (uncharacterized protein LOC111014039 [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 5.9e-12
Identity = 47/69 (68.12%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 1   DMSLSQWLVMRYSIFNLEVIQVAVKLVKQEKAFLISLYLARWFEILD----LLQLLESGD 60
           D   S+WLVMRYSIFNLEVIQ AVK+ KQEK F +SL LA +  + D    LLQLLESGD
Sbjct: 173 DFKGSKWLVMRYSIFNLEVIQAAVKMAKQEKVF-VSLDLASFEMVRDFRLPLLQLLESGD 232

Query: 61  IDLCFANEN 66
           IDLCFANE+
Sbjct: 233 IDLCFANED 240

BLAST of MS023782 vs. NCBI nr
Match: XP_038886551.1 (uncharacterized sugar kinase slr0537 [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 1   DMSLSQWLVMRYSIFNLEVIQVAVKLVKQEKAFLISLYLARWFEILD----LLQLLESGD 60
           D   S+WLVMRYSIFN+EVI+ AVK+ KQEK F +SL LA +  + D    LLQLLESGD
Sbjct: 172 DFKGSKWLVMRYSIFNMEVIEAAVKMAKQEKVF-VSLDLASFEMVRDFRLPLLQLLESGD 231

Query: 61  IDLCFANEN 66
           IDLCFANE+
Sbjct: 232 IDLCFANED 239

BLAST of MS023782 vs. NCBI nr
Match: XP_004152687.1 (uncharacterized protein LOC101214597 [Cucumis sativus] >KGN62617.1 hypothetical protein Csa_021844 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 1   DMSLSQWLVMRYSIFNLEVIQVAVKLVKQEKAFLISLYLARWFEILD----LLQLLESGD 60
           D   S+WLVMRYSIFN+EVI+ AVK+ KQEK F +SL LA +  + D    LLQLLESGD
Sbjct: 172 DFKGSKWLVMRYSIFNIEVIEAAVKMAKQEKVF-VSLDLASFEMVRDFRLPLLQLLESGD 231

Query: 61  IDLCFANEN 66
           IDLCFANE+
Sbjct: 232 IDLCFANED 239

BLAST of MS023782 vs. NCBI nr
Match: XP_022951670.1 (uncharacterized protein LOC111454413 [Cucurbita moschata] >KAG6585583.1 hypothetical protein SDJN03_18316, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020498.1 hypothetical protein SDJN02_17183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.4 bits (189), Expect = 5.0e-11
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 1   DMSLSQWLVMRYSIFNLEVIQVAVKLVKQEKAFLISLYLARWFEILD----LLQLLESGD 60
           D   ++WLVMRYSIFN+EVI+ AVK+ KQEK F +SL LA +  + D    LLQLLESGD
Sbjct: 172 DFKGAKWLVMRYSIFNMEVIEAAVKMAKQEKVF-VSLDLASFEMVRDFRSPLLQLLESGD 231

Query: 61  IDLCFANEN 66
           IDLCFANE+
Sbjct: 232 IDLCFANED 239

BLAST of MS023782 vs. NCBI nr
Match: XP_023538348.1 (uncharacterized protein LOC111799162 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.4 bits (189), Expect = 5.0e-11
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 1   DMSLSQWLVMRYSIFNLEVIQVAVKLVKQEKAFLISLYLARWFEILD----LLQLLESGD 60
           D   ++WLVMRYSIFN+EVI+ AVK+ KQEK F +SL LA +  + D    LLQLLESGD
Sbjct: 172 DFKGAKWLVMRYSIFNMEVIEAAVKMAKQEKVF-VSLDLASFEMVRDFRSPLLQLLESGD 231

Query: 61  IDLCFANEN 66
           IDLCFANE+
Sbjct: 232 IDLCFANED 239

BLAST of MS023782 vs. ExPASy TrEMBL
Match: A0A6J1CTD9 (uncharacterized protein LOC111014039 OS=Momordica charantia OX=3673 GN=LOC111014039 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.9e-12
Identity = 47/69 (68.12%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 1   DMSLSQWLVMRYSIFNLEVIQVAVKLVKQEKAFLISLYLARWFEILD----LLQLLESGD 60
           D   S+WLVMRYSIFNLEVIQ AVK+ KQEK F +SL LA +  + D    LLQLLESGD
Sbjct: 173 DFKGSKWLVMRYSIFNLEVIQAAVKMAKQEKVF-VSLDLASFEMVRDFRLPLLQLLESGD 232

Query: 61  IDLCFANEN 66
           IDLCFANE+
Sbjct: 233 IDLCFANED 240

BLAST of MS023782 vs. ExPASy TrEMBL
Match: A0A0A0LPB8 (PfkB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361810 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 1   DMSLSQWLVMRYSIFNLEVIQVAVKLVKQEKAFLISLYLARWFEILD----LLQLLESGD 60
           D   S+WLVMRYSIFN+EVI+ AVK+ KQEK F +SL LA +  + D    LLQLLESGD
Sbjct: 172 DFKGSKWLVMRYSIFNIEVIEAAVKMAKQEKVF-VSLDLASFEMVRDFRLPLLQLLESGD 231

Query: 61  IDLCFANEN 66
           IDLCFANE+
Sbjct: 232 IDLCFANED 239

BLAST of MS023782 vs. ExPASy TrEMBL
Match: A0A6J1GJH7 (uncharacterized protein LOC111454413 OS=Cucurbita moschata OX=3662 GN=LOC111454413 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.4e-11
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 1   DMSLSQWLVMRYSIFNLEVIQVAVKLVKQEKAFLISLYLARWFEILD----LLQLLESGD 60
           D   ++WLVMRYSIFN+EVI+ AVK+ KQEK F +SL LA +  + D    LLQLLESGD
Sbjct: 172 DFKGAKWLVMRYSIFNMEVIEAAVKMAKQEKVF-VSLDLASFEMVRDFRSPLLQLLESGD 231

Query: 61  IDLCFANEN 66
           IDLCFANE+
Sbjct: 232 IDLCFANED 239

BLAST of MS023782 vs. ExPASy TrEMBL
Match: A0A6J1KQC1 (uncharacterized protein LOC111496250 OS=Cucurbita maxima OX=3661 GN=LOC111496250 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.4e-11
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 1   DMSLSQWLVMRYSIFNLEVIQVAVKLVKQEKAFLISLYLARWFEILD----LLQLLESGD 60
           D   ++WLVMRYSIFN+EVI+ AVK+ KQ+K F +SL LA +  + D    LLQLLESGD
Sbjct: 172 DFKGAKWLVMRYSIFNMEVIEAAVKMAKQDKVF-VSLDLASFEMVRDFRSPLLQLLESGD 231

Query: 61  IDLCFANEN 66
           IDLCFANE+
Sbjct: 232 IDLCFANED 239

BLAST of MS023782 vs. ExPASy TrEMBL
Match: A0A6J1K2P0 (uncharacterized protein LOC111491853 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491853 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 0

Query: 1   DMSLSQWLVMRYSIFNLEVIQVAVKLVKQEKAF----LISLYLARWFEILDLLQLLESGD 60
           D   S+WLVMRYSIF+LEVIQ AVK+ KQE+ F    L S  + R F  L LL+LLESGD
Sbjct: 147 DFKGSKWLVMRYSIFSLEVIQAAVKMAKQERVFVSLDLASFEMVRNFR-LPLLKLLESGD 206

Query: 61  IDLCFANEN 66
           IDLCFANE+
Sbjct: 207 IDLCFANED 214

BLAST of MS023782 vs. TAIR 10
Match: AT1G19600.1 (pfkB-like carbohydrate kinase family protein )

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-10
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 0

Query: 1   DMSLSQWLVMRYSIFNLEVIQVAVKLVKQEKAFLISLYLARWFEIL-----DLLQLLESG 60
           D + S+WLV+RY++ NL+VIQ A++  KQE    +SL LA  FE++     +L QLLESG
Sbjct: 162 DFTGSKWLVLRYAVLNLQVIQAAIRFAKQE-GLSVSLDLAS-FEMVRNSKSELRQLLESG 221

Query: 61  DIDLCFANEN 66
           +IDLCFANE+
Sbjct: 222 NIDLCFANED 229

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022144332.15.9e-1268.12uncharacterized protein LOC111014039 [Momordica charantia][more]
XP_038886551.12.3e-1165.22uncharacterized sugar kinase slr0537 [Benincasa hispida][more]
XP_004152687.12.3e-1165.22uncharacterized protein LOC101214597 [Cucumis sativus] >KGN62617.1 hypothetical ... [more]
XP_022951670.15.0e-1163.77uncharacterized protein LOC111454413 [Cucurbita moschata] >KAG6585583.1 hypothet... [more]
XP_023538348.15.0e-1163.77uncharacterized protein LOC111799162 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CTD92.9e-1268.12uncharacterized protein LOC111014039 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A0A0LPB81.1e-1165.22PfkB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361810 PE=4 S... [more]
A0A6J1GJH72.4e-1163.77uncharacterized protein LOC111454413 OS=Cucurbita moschata OX=3662 GN=LOC1114544... [more]
A0A6J1KQC15.4e-1162.32uncharacterized protein LOC111496250 OS=Cucurbita maxima OX=3661 GN=LOC111496250... [more]
A0A6J1K2P01.2e-1063.77uncharacterized protein LOC111491853 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
AT1G19600.11.6e-1052.86pfkB-like carbohydrate kinase family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023782.1MS023782.1mRNA