MS023777 (gene) Bitter gourd (TR) v1

Overview
NameMS023777
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold207: 34134 .. 34337 (+)
RNA-Seq ExpressionMS023777
SyntenyMS023777
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATTTATAATATACATTAATGCCCAAAATCAAGAAGTCATAGCTCCTCCTTTCAAAATGAGTGTTTCACCTCAAAATGAGAACAATACTCCAACTTTAAAATACATAAAGAATATACAATTACAAAATAATTATTCTAACAAAATTTTACATACAATATTCAATCAGGTTGAAAGAATAGAAAACAAATTAGATAGACCAAGT

mRNA sequence

AGATTTATAATATACATTAATGCCCAAAATCAAGAAGTCATAGCTCCTCCTTTCAAAATGAGTGTTTCACCTCAAAATGAGAACAATACTCCAACTTTAAAATACATAAAGAATATACAATTACAAAATAATTATTCTAACAAAATTTTACATACAATATTCAATCAGGTTGAAAGAATAGAAAACAAATTAGATAGACCAAGT

Coding sequence (CDS)

AGATTTATAATATACATTAATGCCCAAAATCAAGAAGTCATAGCTCCTCCTTTCAAAATGAGTGTTTCACCTCAAAATGAGAACAATACTCCAACTTTAAAATACATAAAGAATATACAATTACAAAATAATTATTCTAACAAAATTTTACATACAATATTCAATCAGGTTGAAAGAATAGAAAACAAATTAGATAGACCAAGT

Protein sequence

RFIIYINAQNQEVIAPPFKMSVSPQNENNTPTLKYIKNIQLQNNYSNKILHTIFNQVERIENKLDRPS
Homology
[Close]
BLAST of MS023777 vs. NCBI nr
Match: CAN64330.1 (hypothetical protein VITISV_014666 [Vitis vinifera])

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 0 

Query: 6   INAQNQEVIAPPFKMSVSPQNENNTPTLKYIKNIQLQNNYSNKILHTIFNQVERIENKLD 65
           I  QN EVI  PFK+     +E  + TLK  KN+Q QNN++N++L TI +Q++R+E+KL+
Sbjct: 267 ITTQNMEVIXSPFKIINPKDDEKRSVTLKDCKNLQQQNNFTNQMLETILSQLDRMEDKLE 326

[Close]
BLAST of MS023777 vs. NCBI nr
Match: XP_023520850.1 (uncharacterized protein LOC111784362 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.7 bits (130), Expect = 3.7e-04
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 0 

Query: 7   NAQNQEVIAPPFKMSVSPQNENNTPTLKYIKNIQLQNNYSNKILHTIFNQVERIENKLDR 66
           N   ++V A PFK  +    E   PTLK IKNIQ QNNYSNKIL TI  Q+E IE K+ +
Sbjct: 111 NYYGEKVKASPFK-HIPEGLEKGNPTLKDIKNIQHQNNYSNKILSTIATQLESIEGKISK 170

Query: 67  PS 69
            S
Sbjct: 171 KS 171

[Close]
BLAST of MS023777 vs. ExPASy TrEMBL
Match: A5C8I5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_014666 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.9e-05
Identity = 28/60 (46.67%), Postives = 42/60 (70.00%), Query Frame = 0 

Query: 6   INAQNQEVIAPPFKMSVSPQNENNTPTLKYIKNIQLQNNYSNKILHTIFNQVERIENKLD 65
           I  QN EVI  PFK+     +E  + TLK  KN+Q QNN++N++L TI +Q++R+E+KL+
Sbjct: 267 ITTQNMEVIXSPFKIINPKDDEKRSVTLKDCKNLQQQNNFTNQMLETILSQLDRMEDKLE 326

The following BLAST results are available for this feature:
BLAST of MS023777 vs. NCBI nr
Match NameE-valueIdentityDescription
CAN64330.11.6e-0446.67hypothetical protein VITISV_014666 [Vitis vinifera][more]
XP_023520850.13.7e-0453.23uncharacterized protein LOC111784362 [Cucurbita pepo subsp. pepo][more]
BLAST of MS023777 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS023777 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A5C8I57.9e-0546.67Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_014666 PE=4 SV=1[more]
BLAST of MS023777 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023777.1MS023777.1mRNA