MS023744 (gene) Bitter gourd (TR) v1

Overview


Name	MS023744
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold570: 699772 .. 699909 (+)
RNA-Seq Expression	MS023744
Synteny	MS023744

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAGGATGGCGGAGTTGCCTTTGATGGTGAGTGCTGCCACGTCATGCGCACGCGCCGCCATTTCGGGGGTGGCGAAGGTGCCGAGCCAGATCCGGCTCTTTTTCTTCGGCTCGCGAATCTCGGAAACCCATTTTCCC

mRNA sequence

TTGAGGATGGCGGAGTTGCCTTTGATGGTGAGTGCTGCCACGTCATGCGCACGCGCCGCCATTTCGGGGGTGGCGAAGGTGCCGAGCCAGATCCGGCTCTTTTTCTTCGGCTCGCGAATCTCGGAAACCCATTTTCCC

Coding sequence (CDS)

TTGAGGATGGCGGAGTTGCCTTTGATGGTGAGTGCTGCCACGTCATGCGCACGCGCCGCCATTTCGGGGGTGGCGAAGGTGCCGAGCCAGATCCGGCTCTTTTTCTTCGGCTCGCGAATCTCGGAAACCCATTTTCCC

Protein sequence

LRMAELPLMVSAATSCARAAISGVAKVPSQIRLFFFGSRISETHFP

Homology

[Close]

BLAST of MS023744 vs. NCBI nr
Match: CAA2616491.1 (unnamed protein product [Spirodela intermedia] >CAA7391632.1 unnamed protein product [Spirodela intermedia])

HSP 1 Score: 73.9 bits (180), Expect = 3.9e-10
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  LRMAELPLMVSAATSCARAAISGVAKVPSQIRLFFFGSRISETHFP 47
          LR A+ PL+VSAATSCARAAIS VAKVPSQIR FF GSRIS+THFP
Sbjct: 20 LRQADWPLIVSAATSCARAAISAVAKVPSQIRDFFLGSRISDTHFP 65

[Close]

BLAST of MS023744 vs. NCBI nr
Match: KAF5776266.1 (hypothetical protein HanXRQr2_Chr12g0522381 [Helianthus annuus])

HSP 1 Score: 72.8 bits (177), Expect = 8.8e-10
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  LRMAELPLMVSAATSCARAAISGVAKVPSQIRLFFFGSRISETHFP 47
          LRMA+ PLM SAATSCARAAISG+ KVPSQIR FF GSRIS+TH P
Sbjct: 20 LRMADFPLMESAATSCARAAISGLEKVPSQIRDFFLGSRISDTHLP 65

[Close]

BLAST of MS023744 vs. NCBI nr
Match: RYQ98407.1 (hypothetical protein Ahy_B08g094447 [Arachis hypogaea])

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 39/46 (84.78%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   LRMAELPLMVSAATSCARAAISGVAKVPSQIRLFFFGSRISETHFP 47
           LRMA LPLM  AATSCARAAISGVAKVPSQIR F  GSRISETH P
Sbjct: 135 LRMAALPLMHKAATSCARAAISGVAKVPSQIRDFLRGSRISETHLP 180

[Close]

BLAST of MS023744 vs. NCBI nr
Match: PPD82210.1 (hypothetical protein GOBAR_DD20833 [Gossypium barbadense])

HSP 1 Score: 70.5 bits (171), Expect = 4.4e-09
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  LRMAELPLMVSAATSCARAAISGVAKVPSQIRLFFFGSRISETHFP 47
          LRMAELPL++ AATSCARAAISGV KVPSQ+R F  GSRIS+TH P
Sbjct: 47 LRMAELPLILKAATSCARAAISGVGKVPSQMRDFLRGSRISDTHLP 92

[Close]

BLAST of MS023744 vs. NCBI nr
Match: KYP54164.1 (hypothetical protein KK1_000338 [Cajanus cajan])

HSP 1 Score: 70.1 bits (170), Expect = 5.7e-09
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  LRMAELPLMVSAATSCARAAISGVAKVPSQIRLFFFGSRISETHFP 47
          LRMAE PLMV AATS ARAAISGVAKVPSQ+R F  GSRIS+THFP
Sbjct: 20 LRMAEWPLMVRAATSWARAAISGVAKVPSQMRDFLRGSRISDTHFP 65

[Close]

BLAST of MS023744 vs. ExPASy TrEMBL
Match: A0A7I8K3J4 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02002710 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  LRMAELPLMVSAATSCARAAISGVAKVPSQIRLFFFGSRISETHFP 47
          LR A+ PL+VSAATSCARAAIS VAKVPSQIR FF GSRIS+THFP
Sbjct: 20 LRQADWPLIVSAATSCARAAISAVAKVPSQIRDFFLGSRISDTHFP 65

[Close]

BLAST of MS023744 vs. ExPASy TrEMBL
Match: A0A7C9DWE3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-10
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1  LRMAELPLMVSAATSCARAAISGVAKVPSQIRLFFFGSRISETHFP 47
          LRMAE PLM++AATSCARAAISG+ KVPSQ+R FF GSRIS+THFP
Sbjct: 51 LRMAESPLMLNAATSCARAAISGLGKVPSQMRDFFRGSRISDTHFP 96

[Close]

BLAST of MS023744 vs. ExPASy TrEMBL
Match: A0A251SY65 (Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0355091 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-10
Identity = 37/46 (80.43%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  LRMAELPLMVSAATSCARAAISGVAKVPSQIRLFFFGSRISETHFP 47
          LRMA+ PLM SAATSCARAAISG+ KVPSQIR FF GSRIS+TH P
Sbjct: 20 LRMADFPLMESAATSCARAAISGLEKVPSQIRDFFLGSRISDTHLP 65

[Close]

BLAST of MS023744 vs. ExPASy TrEMBL
Match: A0A444Y984 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g094447 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.2e-10
Identity = 39/46 (84.78%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   LRMAELPLMVSAATSCARAAISGVAKVPSQIRLFFFGSRISETHFP 47
           LRMA LPLM  AATSCARAAISGVAKVPSQIR F  GSRISETH P
Sbjct: 135 LRMAALPLMHKAATSCARAAISGVAKVPSQIRDFLRGSRISETHLP 180

[Close]

BLAST of MS023744 vs. ExPASy TrEMBL
Match: A0A151SH45 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_000338 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.8e-09
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  LRMAELPLMVSAATSCARAAISGVAKVPSQIRLFFFGSRISETHFP 47
          LRMAE PLMV AATS ARAAISGVAKVPSQ+R F  GSRIS+THFP
Sbjct: 20 LRMAEWPLMVRAATSWARAAISGVAKVPSQMRDFLRGSRISDTHFP 65

The following BLAST results are available for this feature:

BLAST of MS023744 vs. NCBI nr


Match Name	E-value	Identity	Description
CAA2616491.1	3.9e-10	82.61	unnamed protein product [Spirodela intermedia] >CAA7391632.1 unnamed protein pro...	[more]
KAF5776266.1	8.8e-10	80.43	hypothetical protein HanXRQr2_Chr12g0522381 [Helianthus annuus]	[more]
RYQ98407.1	1.5e-09	84.78	hypothetical protein Ahy_B08g094447 [Arachis hypogaea]	[more]
PPD82210.1	4.4e-09	78.26	hypothetical protein GOBAR_DD20833 [Gossypium barbadense]	[more]
KYP54164.1	5.7e-09	82.61	hypothetical protein KK1_000338 [Cajanus cajan]	[more]

BLAST of MS023744 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS023744 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7I8K3J4	1.9e-10	82.61	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02002710 PE=4 SV...	[more]
A0A7C9DWE3	2.5e-10	80.43	Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1	[more]
A0A251SY65	4.2e-10	80.43	Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0355091 PE...	[more]
A0A444Y984	7.2e-10	84.78	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g094447 PE=4 SV=1	[more]
A0A151SH45	2.8e-09	82.61	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_000338 PE=4 SV=1	[more]

BLAST of MS023744 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023744.1	MS023744.1	mRNA