MS023662 (gene) Bitter gourd (TR) v1

Overview
NameMS023662
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGuanine nucleotide-binding protein subunit gamma 3-like
Locationscaffold570: 110798 .. 110932 (-)
RNA-Seq ExpressionMS023662
SyntenyMS023662
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCTTCTACTTCTTCACTTCCATCCCTCCCGCCTCCCTACCCCAAGTCGCCCCCTGAGTATCCAGATTTGTATGGAAAGCGCCGACAAACGGCCAAGGTTCAGATGCTGGAGAGGGAGATTAGTTTTCNAGAT

mRNA sequence

TCTTCTTCTACTTCTTCACTTCCATCCCTCCCGCCTCCCTACCCCAAGTCGCCCCCTGAGTATCCAGATTTGTATGGAAAGCGCCGACAAACGGCCAAGGTTCAGATGCTGGAGAGGGAGATTAGTTTTCNAGAT

Coding sequence (CDS)

TCTTCTTCTACTTCTTCACTTCCATCCCTCCCGCCTCCCTACCCCAAGTCGCCCCCTGAGTATCCAGATTTGTATGGAAAGCGCCGACAAACGGCCAAGGTTCAGATGCTGGAGAGGGAGATTAGTTTTCNAGAT

Protein sequence

SSSTSSLPSLPPPYPKSPPEYPDLYGKRRQTAKVQMLEREISFXD
Homology
BLAST of MS023662 vs. NCBI nr
Match: XP_038889974.1 (guanine nucleotide-binding protein subunit gamma 3-like [Benincasa hispida] >XP_038889975.1 guanine nucleotide-binding protein subunit gamma 3-like [Benincasa hispida] >XP_038889976.1 guanine nucleotide-binding protein subunit gamma 3-like [Benincasa hispida])

HSP 1 Score: 81.3 bits (199), Expect = 2.4e-12
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 0

Query: 1  SSSTSSLPSLPPPYPKSPPEYPDLYGKRRQTAKVQMLEREISFXD 46
          SSS+SS+PSLPPPYPKSPPEYPDLYGKRRQ AKVQMLEREI F +
Sbjct: 9  SSSSSSIPSLPPPYPKSPPEYPDLYGKRRQAAKVQMLEREIGFLE 53

BLAST of MS023662 vs. NCBI nr
Match: XP_022999343.1 (guanine nucleotide-binding protein subunit gamma 3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 77.8 bits (190), Expect = 2.7e-11
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 0

Query: 2  SSTSSLPSLPPPYPKSPPEYPDLYGKRRQTAKVQMLEREISFXD 46
          +S+SS+PSLPPPYPKSPP+YPDLYGKRRQ AKVQMLEREI F +
Sbjct: 8  ASSSSIPSLPPPYPKSPPQYPDLYGKRRQAAKVQMLEREIGFLE 51

BLAST of MS023662 vs. NCBI nr
Match: XP_022999339.1 (guanine nucleotide-binding protein subunit gamma 3-like isoform X1 [Cucurbita maxima] >XP_022999341.1 guanine nucleotide-binding protein subunit gamma 3-like isoform X1 [Cucurbita maxima] >XP_022999342.1 guanine nucleotide-binding protein subunit gamma 3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 77.8 bits (190), Expect = 2.7e-11
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 0

Query: 2  SSTSSLPSLPPPYPKSPPEYPDLYGKRRQTAKVQMLEREISFXD 46
          +S+SS+PSLPPPYPKSPP+YPDLYGKRRQ AKVQMLEREI F +
Sbjct: 8  ASSSSIPSLPPPYPKSPPQYPDLYGKRRQAAKVQMLEREIGFLE 51

BLAST of MS023662 vs. NCBI nr
Match: XP_022946450.1 (guanine nucleotide-binding protein subunit gamma 3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 77.8 bits (190), Expect = 2.7e-11
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 0

Query: 2  SSTSSLPSLPPPYPKSPPEYPDLYGKRRQTAKVQMLEREISFXD 46
          +S+SS+PSLPPPYPKSPP+YPDLYGKRRQ AKVQMLEREI F +
Sbjct: 8  ASSSSIPSLPPPYPKSPPQYPDLYGKRRQAAKVQMLEREIGFLE 51

BLAST of MS023662 vs. NCBI nr
Match: XP_022946452.1 (guanine nucleotide-binding protein subunit gamma 3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 77.8 bits (190), Expect = 2.7e-11
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 0

Query: 2  SSTSSLPSLPPPYPKSPPEYPDLYGKRRQTAKVQMLEREISFXD 46
          +S+SS+PSLPPPYPKSPP+YPDLYGKRRQ AKVQMLEREI F +
Sbjct: 8  ASSSSIPSLPPPYPKSPPQYPDLYGKRRQAAKVQMLEREIGFLE 51

BLAST of MS023662 vs. ExPASy Swiss-Prot
Match: Q6AWT8 (Guanine nucleotide-binding protein subunit gamma 3 OS=Arabidopsis thaliana OX=3702 GN=GG3 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.2e-11
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 0

Query: 1  SSSTSSLPSLPPPYPKSPPEYPDLYGKRRQTAKVQMLEREISFXD 46
          SSS+ +  SLPPP PKSPPEYPDLYGKRR+ A+VQMLEREI F +
Sbjct: 21 SSSSLAPSSLPPPRPKSPPEYPDLYGKRREAARVQMLEREIGFLE 65

BLAST of MS023662 vs. ExPASy TrEMBL
Match: A0A6J1KGS0 (guanine nucleotide-binding protein subunit gamma 3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493745 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 0

Query: 2  SSTSSLPSLPPPYPKSPPEYPDLYGKRRQTAKVQMLEREISFXD 46
          +S+SS+PSLPPPYPKSPP+YPDLYGKRRQ AKVQMLEREI F +
Sbjct: 8  ASSSSIPSLPPPYPKSPPQYPDLYGKRRQAAKVQMLEREIGFLE 51

BLAST of MS023662 vs. ExPASy TrEMBL
Match: A0A6J1KJF9 (guanine nucleotide-binding protein subunit gamma 3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493745 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 0

Query: 2  SSTSSLPSLPPPYPKSPPEYPDLYGKRRQTAKVQMLEREISFXD 46
          +S+SS+PSLPPPYPKSPP+YPDLYGKRRQ AKVQMLEREI F +
Sbjct: 8  ASSSSIPSLPPPYPKSPPQYPDLYGKRRQAAKVQMLEREIGFLE 51

BLAST of MS023662 vs. ExPASy TrEMBL
Match: A0A6J1G3W8 (guanine nucleotide-binding protein subunit gamma 3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450505 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 0

Query: 2  SSTSSLPSLPPPYPKSPPEYPDLYGKRRQTAKVQMLEREISFXD 46
          +S+SS+PSLPPPYPKSPP+YPDLYGKRRQ AKVQMLEREI F +
Sbjct: 8  ASSSSIPSLPPPYPKSPPQYPDLYGKRRQAAKVQMLEREIGFLE 51

BLAST of MS023662 vs. ExPASy TrEMBL
Match: A0A6J1G3S6 (guanine nucleotide-binding protein subunit gamma 3-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111450505 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 0

Query: 2  SSTSSLPSLPPPYPKSPPEYPDLYGKRRQTAKVQMLEREISFXD 46
          +S+SS+PSLPPPYPKSPP+YPDLYGKRRQ AKVQMLEREI F +
Sbjct: 8  ASSSSIPSLPPPYPKSPPQYPDLYGKRRQAAKVQMLEREIGFLE 51

BLAST of MS023662 vs. ExPASy TrEMBL
Match: A0A2Z6NAF2 (G protein gamma domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_206590 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-11
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 0

Query: 1  SSSTSSLPSLPPPYPKSPPEYPDLYGKRRQTAKVQMLEREISFXD 46
          SSS+SS+PSLPPP PKSPPEYPDLYGKRR+ AKVQMLEREISF +
Sbjct: 9  SSSSSSVPSLPPPSPKSPPEYPDLYGKRREMAKVQMLEREISFLE 53

BLAST of MS023662 vs. TAIR 10
Match: AT5G20635.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: keratin filament, chloroplast; CONTAINS InterPro DOMAIN/s: Keratin, high sulphur B2 protein (InterPro:IPR002494); Has 6153 Blast hits to 2882 proteins in 265 species: Archae - 6; Bacteria - 47; Metazoa - 4777; Fungi - 68; Plants - 187; Viruses - 30; Other Eukaryotes - 1038 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 4.4e-12
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 0

Query: 1  SSSTSSLPSLPPPYPKSPPEYPDLYGKRRQTAKVQMLEREISFXD 46
          SSS+ +  SLPPP PKSPPEYPDLYGKRR+ A+VQMLEREI F +
Sbjct: 21 SSSSLAPSSLPPPRPKSPPEYPDLYGKRREAARVQMLEREIGFLE 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038889974.12.4e-1286.67guanine nucleotide-binding protein subunit gamma 3-like [Benincasa hispida] >XP_... [more]
XP_022999343.12.7e-1181.82guanine nucleotide-binding protein subunit gamma 3-like isoform X2 [Cucurbita ma... [more]
XP_022999339.12.7e-1181.82guanine nucleotide-binding protein subunit gamma 3-like isoform X1 [Cucurbita ma... [more]
XP_022946450.12.7e-1181.82guanine nucleotide-binding protein subunit gamma 3-like isoform X1 [Cucurbita mo... [more]
XP_022946452.12.7e-1181.82guanine nucleotide-binding protein subunit gamma 3-like isoform X2 [Cucurbita mo... [more]
Match NameE-valueIdentityDescription
Q6AWT86.2e-1173.33Guanine nucleotide-binding protein subunit gamma 3 OS=Arabidopsis thaliana OX=37... [more]
Match NameE-valueIdentityDescription
A0A6J1KGS01.3e-1181.82guanine nucleotide-binding protein subunit gamma 3-like isoform X1 OS=Cucurbita ... [more]
A0A6J1KJF91.3e-1181.82guanine nucleotide-binding protein subunit gamma 3-like isoform X2 OS=Cucurbita ... [more]
A0A6J1G3W81.3e-1181.82guanine nucleotide-binding protein subunit gamma 3-like isoform X1 OS=Cucurbita ... [more]
A0A6J1G3S61.3e-1181.82guanine nucleotide-binding protein subunit gamma 3-like isoform X2 OS=Cucurbita ... [more]
A0A2Z6NAF21.7e-1184.44G protein gamma domain-containing protein OS=Trifolium subterraneum OX=3900 GN=T... [more]
Match NameE-valueIdentityDescription
AT5G20635.14.4e-1273.33FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availablePANTHERPTHR32378:SF10GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT GAMMA 3coord: 2..43
NoneNo IPR availablePANTHERPTHR32378GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT GAMMA 3coord: 2..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023662.1MS023662.1mRNA