MS023655 (gene) Bitter gourd (TR) v1

Overview


Name	MS023655
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DEAD-box ATP-dependent RNA helicase 17
Location	scaffold570: 24313 .. 24983 (+)
RNA-Seq Expression	MS023655
Synteny	MS023655

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAGCAGCACCAAATTTATGAACGAAGAGGTGAAGACGACGAAGAAGAAAATGGGTAGGGAGAGCGAGATTTTTGCTTCTTGTACTTTCTCTAGCCTCGGTCTGCACTCTACTTTATGCGACCAACTCCAAGGTGTGTTGGGTGCCGACTTTATTCTACTTCCTCCACCGCCTCCATTTGTTATCTGCCTTCTGTTATGCTAATCACCCTAGAACTTTACTTTAGTAGTTTTTGCGAACCTACCGTCTCCGGTTAATTGCATTGATAATAATATCGGCCTGCATCTTTCGGTGTGGTTTTTTTTCTTCGATTGCGACAGAGAAAATGGGATTTGAAGTACCAACCCTTGTACAGGCTCAAGCAATTCCGGCTATCTTGTCCGGGCGTCACGTGTATCCTTTGCGCATAACTATTTTAATTGATATATACGTGCTTGCGCATGCGTGAGTGTTTATATTGATTCTTTCTTTACCATGTAGAAATTCATGAAATGGCGTATCTTTCTTTGATATTTGTAGTGGTTCTGTAGGTTTTCTTAACTTCATTCAATAGCATTGTTAATGCGGCCACGGGTACTGGCAAAACTATTGCGTATTTGGTTCCAATCATCCATCACTTGCAGAAGTCCGGTCGTAGGATTCAGCGGGCTGATGGAACTTTCGGTACG

mRNA sequence

ATGAATAGCAGCACCAAATTTATGAACGAAGAGGTGAAGACGACGAAGAAGAAAATGGGTAGGGAGAGCGAGATTTTTGCTTCTTGTACTTTCTCTAGCCTCGGTCTGCACTCTACTTTATGCGACCAACTCCAAGAGAAAATGGGATTTGAAGTACCAACCCTTGTACAGGCTCAAGCAATTCCGGCTATCTTGTCCGGGCGTCACGTCATTGTTAATGCGGCCACGGGTACTGGCAAAACTATTGCGTATTTGGTTCCAATCATCCATCACTTGCAGAAGTCCGGTCGTAGGATTCAGCGGGCTGATGGAACTTTCGGTACG

Coding sequence (CDS)

ATGAATAGCAGCACCAAATTTATGAACGAAGAGGTGAAGACGACGAAGAAGAAAATGGGTAGGGAGAGCGAGATTTTTGCTTCTTGTACTTTCTCTAGCCTCGGTCTGCACTCTACTTTATGCGACCAACTCCAAGAGAAAATGGGATTTGAAGTACCAACCCTTGTACAGGCTCAAGCAATTCCGGCTATCTTGTCCGGGCGTCACGTCATTGTTAATGCGGCCACGGGTACTGGCAAAACTATTGCGTATTTGGTTCCAATCATCCATCACTTGCAGAAGTCCGGTCGTAGGATTCAGCGGGCTGATGGAACTTTCGGTACG

Protein sequence

MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTFGT

Homology

[Close]

BLAST of MS023655 vs. NCBI nr
Match: XP_022154763.1 (DEAD-box ATP-dependent RNA helicase 17 [Momordica charantia])

HSP 1 Score: 207.2 bits (526), Expect = 7.0e-50
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQA 60
           MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQA
Sbjct: 1   MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQA 60

Query: 61  IPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF 107
           I AILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF
Sbjct: 61  IRAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF 106

[Close]

BLAST of MS023655 vs. NCBI nr
Match: XP_022975312.1 (DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita maxima])

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40
Identity = 85/99 (85.86%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 8   MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSG 67
           MNE +KTT KKM +E EIFASCTF+SLGLH+TLCD+L++KMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEVMKTTTKKMVKEDEIFASCTFASLGLHTTLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 68  RHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF 107
           RHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]

BLAST of MS023655 vs. NCBI nr
Match: XP_022946513.1 (DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita moschata] >XP_023546293.1 DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40
Identity = 85/99 (85.86%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 8   MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSG 67
           MNE +KTT KKM +E EIFASCTF+SLGLH+TLCD+L++KMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEGMKTTTKKMVKEDEIFASCTFASLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 68  RHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF 107
           RHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]

BLAST of MS023655 vs. NCBI nr
Match: XP_022946514.1 (DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita moschata] >XP_023546294.1 DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40
Identity = 85/99 (85.86%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 8   MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSG 67
           MNE +KTT KKM +E EIFASCTF+SLGLH+TLCD+L++KMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEGMKTTTKKMVKEDEIFASCTFASLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 68  RHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF 107
           RHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]

BLAST of MS023655 vs. NCBI nr
Match: XP_022975310.1 (DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita maxima])

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40
Identity = 85/99 (85.86%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 8   MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSG 67
           MNE +KTT KKM +E EIFASCTF+SLGLH+TLCD+L++KMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEVMKTTTKKMVKEDEIFASCTFASLGLHTTLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 68  RHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF 107
           RHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]

BLAST of MS023655 vs. ExPASy Swiss-Prot
Match: Q7XJN0 (DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana OX=3702 GN=RH17 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.0e-27
Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 1   MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQA 60
           M  + +   E  +  K     +S +FASC+FSSLGL + L DQL+E+MGFE PTLVQAQA
Sbjct: 1   MKRAQQSARETKQEAKDASKAKSGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQA 60

Query: 61  IPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF 107
           IP ILSGR V+VNA TGTGKTIAYL P+IHHLQ    ++ R+ GTF
Sbjct: 61  IPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTF 106

[Close]

BLAST of MS023655 vs. ExPASy Swiss-Prot
Match: Q0DLB9 (DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica OX=39947 GN=RH17 PE=2 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 7.3e-26
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 13  KTTKKKMGRESE---IFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRH 72
           K  K  + +E +   +FASC+F+ LGLH TLC  LQ+KMGF+ PT +QAQAIP  +SG+H
Sbjct: 4   KLGKSPVAKEEDKEGLFASCSFTDLGLHPTLCAHLQDKMGFQAPTRIQAQAIPVAMSGQH 63

Query: 73  VIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF 107
           ++V AATGTGKT+AYL PI+H LQ    R++R DGTF
Sbjct: 64  MLVKAATGTGKTLAYLAPIVHLLQMREPRVERTDGTF 100

[Close]

BLAST of MS023655 vs. ExPASy Swiss-Prot
Match: Q9H8H2 (Probable ATP-dependent RNA helicase DDX31 OS=Homo sapiens OX=9606 GN=DDX31 PE=1 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-12
Identity = 33/85 (38.82%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 22  ESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKT 81
           + ++F S  F  LGLH  L   +   +     T VQ Q+IP +L GR  +V + TG+GKT
Sbjct: 223 QEKVFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKT 282

Query: 82  IAYLVPIIHHLQKSGRRIQRADGTF 107
           +AY +P++  LQ    +IQR+DG +
Sbjct: 283 LAYCIPVVQSLQAMESKIQRSDGPY 307

[Close]

BLAST of MS023655 vs. ExPASy Swiss-Prot
Match: A5DDF4 (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=PRP5 PE=3 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 4.6e-12
Identity = 32/77 (41.56%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 31  FSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIH 90
           ++ LGL S++   L+EK+G++ P+ +Q+QA+PAI+SGR +I  A TG+GKT+A+++P+I 
Sbjct: 268 WAQLGLPSSIMTVLEEKLGYDTPSPIQSQALPAIMSGRDIIGVANTGSGKTLAFVIPLIR 327

Query: 91  HLQKSGRRIQRADGTFG 108
           H+      ++  DG  G
Sbjct: 328 HIMDQ-PPLKSGDGPIG 343

[Close]

BLAST of MS023655 vs. ExPASy Swiss-Prot
Match: Q8W4E1 (DEAD-box ATP-dependent RNA helicase 47, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH47 PE=1 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 4.6e-12
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 9   NEEVKTTKKKMGRE--SEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILS 68
           N+++K  K+K   E  S +F++ +F  LGL  +L D L E+ GF VPT VQ+ A+PAI+ 
Sbjct: 88  NDKMKVVKEKKPAEIVSPLFSAKSFEELGLPDSLLDSL-EREGFSVPTDVQSAAVPAIIK 147

Query: 69  GRHVIVNAATGTGKTIAYLVPIIHHL 93
           G   ++ + TG+GKT+AYL+PI+  +
Sbjct: 148 GHDAVIQSYTGSGKTLAYLLPILSEI 172

[Close]

BLAST of MS023655 vs. ExPASy TrEMBL
Match: A0A6J1DL75 (DEAD-box ATP-dependent RNA helicase 17 OS=Momordica charantia OX=3673 GN=LOC111021936 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.4e-50
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQA 60
           MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQA
Sbjct: 1   MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQA 60

Query: 61  IPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF 107
           I AILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF
Sbjct: 61  IRAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF 106

[Close]

BLAST of MS023655 vs. ExPASy TrEMBL
Match: A0A0A0LKK2 (Q_MOTIF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000050 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.2e-41
Identity = 88/107 (82.24%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQA 60
           M+SS K+ NE VKTT KKM +E E+FASCTF+SLGL STLCDQL++KMGFEVPTLVQAQA
Sbjct: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60

Query: 61  IPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTFG 108
           IPAILS RHV+VNAATGTGKT+AYLVPIIHHLQKS RR QRADGTFG
Sbjct: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFG 107

[Close]

BLAST of MS023655 vs. ExPASy TrEMBL
Match: A0A6J1ICQ6 (DEAD-box ATP-dependent RNA helicase 17 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111474473 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 85/99 (85.86%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 8   MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSG 67
           MNE +KTT KKM +E EIFASCTF+SLGLH+TLCD+L++KMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEVMKTTTKKMVKEDEIFASCTFASLGLHTTLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 68  RHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF 107
           RHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]

BLAST of MS023655 vs. ExPASy TrEMBL
Match: A0A6J1IGD1 (DEAD-box ATP-dependent RNA helicase 17 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111474473 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 85/99 (85.86%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 8   MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSG 67
           MNE +KTT KKM +E EIFASCTF+SLGLH+TLCD+L++KMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEVMKTTTKKMVKEDEIFASCTFASLGLHTTLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 68  RHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF 107
           RHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]

BLAST of MS023655 vs. ExPASy TrEMBL
Match: A0A6J1G427 (DEAD-box ATP-dependent RNA helicase 17 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450551 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 85/99 (85.86%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 8   MNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSG 67
           MNE +KTT KKM +E EIFASCTF+SLGLH+TLCD+L++KMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEGMKTTTKKMVKEDEIFASCTFASLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 68  RHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF 107
           RHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]

BLAST of MS023655 vs. TAIR 10
Match: AT2G40700.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-28
Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 1   MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQA 60
           M  + +   E  +  K     +S +FASC+FSSLGL + L DQL+E+MGFE PTLVQAQA
Sbjct: 1   MKRAQQSARETKQEAKDASKAKSGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQA 60

Query: 61  IPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF 107
           IP ILSGR V+VNA TGTGKTIAYL P+IHHLQ    ++ R+ GTF
Sbjct: 61  IPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTF 106

[Close]

BLAST of MS023655 vs. TAIR 10
Match: AT1G12770.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 3.3e-13
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 9   NEEVKTTKKKMGRE--SEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILS 68
           N+++K  K+K   E  S +F++ +F  LGL  +L D L E+ GF VPT VQ+ A+PAI+ 
Sbjct: 88  NDKMKVVKEKKPAEIVSPLFSAKSFEELGLPDSLLDSL-EREGFSVPTDVQSAAVPAIIK 147

Query: 69  GRHVIVNAATGTGKTIAYLVPIIHHL 93
           G   ++ + TG+GKT+AYL+PI+  +
Sbjct: 148 GHDAVIQSYTGSGKTLAYLLPILSEI 172

[Close]

BLAST of MS023655 vs. TAIR 10
Match: AT4G34910.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-11
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 10  EEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRH 69
           EE +  +++   + E  A  +F  LGL S L   L +K G E PTL+Q  AIP IL G+ 
Sbjct: 27  EEQRNDREQEEEQKEEEAPKSFEELGLDSRLIRALTKK-GIEKPTLIQQSAIPYILEGKD 86

Query: 70  VIVNAATGTGKTIAYLVPIIHHL 93
           V+  A TG+GKT+AYL+P++  L
Sbjct: 87  VVARAKTGSGKTLAYLLPLLQKL 108

[Close]

BLAST of MS023655 vs. TAIR 10
Match: AT2G47330.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-10
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 30  TFSSLGLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPII 89
           TF   G  S +   + +K  +E PT +Q QA+P +LSGR VI  A TG+GKT A+++P+I
Sbjct: 229 TFEDCGFSSQIMSAI-KKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMI 288

Query: 90  HHLQKSGRRIQRADGTFG 108
            H+      +QR +G  G
Sbjct: 289 VHIMDQ-PELQRDEGPIG 304

[Close]

BLAST of MS023655 vs. TAIR 10
Match: AT3G09620.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 2.9e-09
Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 35  GLHSTLCDQLQEKMGFEVPTLVQAQAIPAILSGRHVIVNAATGTGKTIAYLVPIIHHLQK 94
           GL S + D L +K+ +E P  +QAQA+P I+SGR  I  A TG+GKT+ +++P++ H+ K
Sbjct: 402 GLTSKILDTL-KKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI-K 461

Query: 95  SGRRIQRADGTFG 108
               ++  DG  G
Sbjct: 462 DQPPVEAGDGPIG 472

The following BLAST results are available for this feature:

BLAST of MS023655 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154763.1	7.0e-50	99.06	DEAD-box ATP-dependent RNA helicase 17 [Momordica charantia]	[more]
XP_022975312.1	2.3e-40	85.86	DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita maxima]	[more]
XP_022946513.1	2.3e-40	85.86	DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita moschata] >XP_02354...	[more]
XP_022946514.1	2.3e-40	85.86	DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita moschata] >XP_02354...	[more]
XP_022975310.1	2.3e-40	85.86	DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita maxima]	[more]

BLAST of MS023655 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XJN0	3.0e-27	58.49	DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana OX=3702 GN=RH17 P...	[more]
Q0DLB9	7.3e-26	56.70	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q9H8H2	1.2e-12	38.82	Probable ATP-dependent RNA helicase DDX31 OS=Homo sapiens OX=9606 GN=DDX31 PE=1 ...	[more]
A5DDF4	4.6e-12	41.56	Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Meyerozyma guilliermondii...	[more]
Q8W4E1	4.6e-12	43.02	DEAD-box ATP-dependent RNA helicase 47, mitochondrial OS=Arabidopsis thaliana OX...	[more]

BLAST of MS023655 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DL75	3.4e-50	99.06	DEAD-box ATP-dependent RNA helicase 17 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A0A0LKK2	2.2e-41	82.24	Q_MOTIF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000050 PE=...	[more]
A0A6J1ICQ6	1.1e-40	85.86	DEAD-box ATP-dependent RNA helicase 17 isoform X2 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1IGD1	1.1e-40	85.86	DEAD-box ATP-dependent RNA helicase 17 isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1G427	1.1e-40	85.86	DEAD-box ATP-dependent RNA helicase 17 isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]

BLAST of MS023655 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40700.1	2.1e-28	58.49	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G12770.1	3.3e-13	43.02	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT4G34910.1	2.3e-11	43.37	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT2G47330.1	4.4e-10	41.03	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT3G09620.1	2.9e-09	41.10	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 55..94 e-value: 6.7E-12 score: 45.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..107 e-value: 5.5E-26 score: 93.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 24..95
None	No IPR available	PANTHER	PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	coord: 10..98
IPR014014	RNA helicase, DEAD-box type, Q motif	PROSITE	PS51195	Q_MOTIF	coord: 29..58 score: 9.729445

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023655.1	MS023655.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003724	RNA helicase activity