MS023612 (gene) Bitter gourd (TR) v1

Overview
NameMS023612
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Locationscaffold155: 606444 .. 606736 (-)
RNA-Seq ExpressionMS023612
SyntenyMS023612
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCAGAAAGTTCAAATTATTCTTTGCTATGGAAGTATAAACACTTCAGATAGAATTCAAAGAAAGTTTACAAATTGGTCCCCCTCCCCTCCCATTTTCAGAATATGTTTATGGGTCAGAAGAGCCCCCATCTTTTTATTCTCTGCCCATTTGTGAATTGGTGGTATCGTCTCCTACGTGTGTTTGATGTTTCGAGCTACCTGCATATTTGCATTGACAGCTGGTTGATTGAAGGTTTTGATGGGTTTTCGTTTAAGAAAAAAGCGAAAATGCTTTGGAATTGTGTCTTTAGA

mRNA sequence

CTTCAGAAAGTTCAAATTATTCTTTGCTATGGAAGTATAAACACTTCAGATAGAATTCAAAGAAAGTTTACAAATTGGTCCCCCTCCCCTCCCATTTTCAGAATATGTTTAGGTCAGAAGAGCCCCCATCTTTTTATTCTCTGCCCATTTGTGAATTGGTGGTATCGTCTCCTACGTGTGTTTGATGTTTCGAGCTACCTGCATATTTGCATTGACAGCTGGTTGATTGAAGGTTTTGATGGGTTTTCGTTTAAGAAAAAAGCGAAAATGCTTTGGAATTGTGTCTTTAGA

Coding sequence (CDS)

CTTCAGAAAGTTCAAATTATTCTTTGCTATGGAAGTATAAACACTTCAGATAGAATTCAAAGAAAGTTTACAAATTGGTCCCCCTCCCCTCCCATTTTCAGAATATGTTTAGGTCAGAAGAGCCCCCATCTTTTTATTCTCTGCCCATTTGTGAATTGGTGGTATCGTCTCCTACGTGTGTTTGATGTTTCGAGCTACCTGCATATTTGCATTGACAGCTGGTTGATTGAAGGTTTTGATGGGTTTTCGTTTAAGAAAAAAGCGAAAATGCTTTGGAATTGTGTCTTTAGA

Protein sequence

LQKVQIILCYGSINTSDRIQRKFTNWSPSPPIFRICLGQKSPHLFILCPFVNWWYRLLRVFDVSSYLHICIDSWLIEGFDGFSFKKKAKMLWNCVFR
Homology
BLAST of MS023612 vs. NCBI nr
Match: KAA0056469.1 (uncharacterized protein E6C27_scaffold186G002430 [Cucumis melo var. makuwa] >TYK29058.1 uncharacterized protein E5676_scaffold120G001760 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-04
Identity = 31/81 (38.27%), Postives = 44/81 (54.32%), Query Frame = 0

Query: 12  SINTSDRIQRKFTNWSPSPPIFRICLGQKS--PHLFILCPFVN-WWYRLLRVFDVSSYLH 71
           S+NT +++QRKF   S S  +  +CL +K    HLF+ C   +  W     +F V SYL 
Sbjct: 128 SLNTHEKLQRKFPLRSLSLSMCCLCLKEKETLDHLFLHCEIASKGWEIRFSIFGVDSYLP 187

Query: 72  ICIDSWLIEGFDGFSFKKKAK 90
             ID W++EG DG  F  + K
Sbjct: 188 EKIDDWMMEGLDGRGFHAEEK 208

BLAST of MS023612 vs. NCBI nr
Match: KAA0032390.1 (uncharacterized protein E6C27_scaffold219G002650 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 4.0e-04
Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 0

Query: 12  SINTSDRIQRKFTNWSPSPPIFRICLGQKS--PHLFILCPFVNWWYR-LLRVFDVSSYLH 71
           S+N  +++QRKF N S SP  + +CL +     HLF+ C F +     LL  F + S   
Sbjct: 45  SLNIQEKLQRKFPNCSLSPATYCLCLRELKTVDHLFLHCDFTSKGRTVLLNPFGLDSCRP 104

Query: 72  ICIDSWLIEGFDGFSFKKKAKML 92
             ID W+++G +G SF  K K+L
Sbjct: 105 KKIDDWIMDGLNGRSFHGKGKIL 127

BLAST of MS023612 vs. NCBI nr
Match: TYK31299.1 (protein FAM91A1 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 4.0e-04
Identity = 32/84 (38.10%), Postives = 44/84 (52.38%), Query Frame = 0

Query: 8   LCYGSINTSDRIQRKFTNWSPSPPIFRICL--GQKSPHLFILCPFV-NWWYRLLRVFDVS 67
           L Y S+N  +++QRKF N S SP I  +CL   +   HLF+ C F    W R+  +F + 
Sbjct: 247 LAYRSLNIQNKLQRKFPNGSLSPSICYLCLKEAEAFDHLFLHCDFAFKGWNRIFDLFALD 306

Query: 68  SYLHICIDSWLIEGFDGFSFKKKA 89
             L   ID  + +G  G SF  KA
Sbjct: 307 DCLPKKIDDGMKDGLTGGSFGGKA 330

BLAST of MS023612 vs. ExPASy TrEMBL
Match: A0A5D3E019 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001760 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 31/81 (38.27%), Postives = 44/81 (54.32%), Query Frame = 0

Query: 12  SINTSDRIQRKFTNWSPSPPIFRICLGQKS--PHLFILCPFVN-WWYRLLRVFDVSSYLH 71
           S+NT +++QRKF   S S  +  +CL +K    HLF+ C   +  W     +F V SYL 
Sbjct: 128 SLNTHEKLQRKFPLRSLSLSMCCLCLKEKETLDHLFLHCEIASKGWEIRFSIFGVDSYLP 187

Query: 72  ICIDSWLIEGFDGFSFKKKAK 90
             ID W++EG DG  F  + K
Sbjct: 188 EKIDDWMMEGLDGRGFHAEEK 208

BLAST of MS023612 vs. ExPASy TrEMBL
Match: A0A5D3E632 (Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005970 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-04
Identity = 32/84 (38.10%), Postives = 44/84 (52.38%), Query Frame = 0

Query: 8   LCYGSINTSDRIQRKFTNWSPSPPIFRICL--GQKSPHLFILCPFV-NWWYRLLRVFDVS 67
           L Y S+N  +++QRKF N S SP I  +CL   +   HLF+ C F    W R+  +F + 
Sbjct: 247 LAYRSLNIQNKLQRKFPNGSLSPSICYLCLKEAEAFDHLFLHCDFAFKGWNRIFDLFALD 306

Query: 68  SYLHICIDSWLIEGFDGFSFKKKA 89
             L   ID  + +G  G SF  KA
Sbjct: 307 DCLPKKIDDGMKDGLTGGSFGGKA 330

BLAST of MS023612 vs. ExPASy TrEMBL
Match: A0A5A7SNM9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002650 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-04
Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 0

Query: 12  SINTSDRIQRKFTNWSPSPPIFRICLGQKS--PHLFILCPFVNWWYR-LLRVFDVSSYLH 71
           S+N  +++QRKF N S SP  + +CL +     HLF+ C F +     LL  F + S   
Sbjct: 45  SLNIQEKLQRKFPNCSLSPATYCLCLRELKTVDHLFLHCDFTSKGRTVLLNPFGLDSCRP 104

Query: 72  ICIDSWLIEGFDGFSFKKKAKML 92
             ID W+++G +G SF  K K+L
Sbjct: 105 KKIDDWIMDGLNGRSFHGKGKIL 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0056469.12.3e-0438.27uncharacterized protein E6C27_scaffold186G002430 [Cucumis melo var. makuwa] >TYK... [more]
KAA0032390.14.0e-0437.35uncharacterized protein E6C27_scaffold219G002650 [Cucumis melo var. makuwa][more]
TYK31299.14.0e-0438.10protein FAM91A1 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E0191.1e-0438.27zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5D3E6321.9e-0438.10Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0059... [more]
A0A5A7SNM91.9e-0437.35Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023612.1MS023612.1mRNA